Wall clock time and date at job start Mon Mar 30 2020 07:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46816 * 2 1 4 4 H 1.08999 * 109.47654 * 55.00196 * 3 2 1 5 5 C 1.52997 * 109.47316 * 294.99918 * 3 2 1 6 6 C 1.50703 * 109.47143 * 175.00415 * 3 2 1 7 7 C 1.38235 * 120.01086 * 59.99680 * 6 3 2 8 8 C 1.38221 * 120.01454 * 179.74853 * 7 6 3 9 9 C 1.38259 * 120.02727 * 359.95749 * 8 7 6 10 10 C 1.50695 * 119.99299 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47048 * 90.00070 * 10 9 8 12 12 C 1.50704 * 109.47044 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99862 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99806 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00410 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00012 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46769 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47134 * 119.99659 * 16 14 12 19 19 H 1.48498 * 109.47410 * 240.00316 * 16 14 12 20 20 C 1.38193 * 120.01200 * 0.02562 * 9 8 7 21 21 C 1.38335 * 120.00097 * 239.72661 * 6 3 2 22 22 Cl 1.73597 * 120.01783 * 0.24590 * 21 6 3 23 23 H 1.08997 * 109.47407 * 60.00489 * 1 2 3 24 24 H 1.09003 * 109.47176 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47237 * 299.99734 * 1 2 3 26 26 H 1.09001 * 109.47237 * 240.00266 * 2 1 3 27 27 H 1.08997 * 109.47407 * 119.99511 * 2 1 3 28 28 H 1.08998 * 109.47655 * 180.02562 * 5 3 2 29 29 H 1.08999 * 109.47440 * 300.00405 * 5 3 2 30 30 H 1.08999 * 109.46995 * 60.00013 * 5 3 2 31 31 H 1.07995 * 119.98862 * 359.72708 * 7 6 3 32 32 H 1.08001 * 119.98312 * 179.97438 * 8 7 6 33 33 H 1.09005 * 109.47417 * 210.00215 * 10 9 8 34 34 H 1.09001 * 109.47418 * 329.99559 * 10 9 8 35 35 H 1.09004 * 109.47403 * 299.99592 * 11 10 9 36 36 H 1.09002 * 109.47566 * 60.00030 * 11 10 9 37 37 H 0.97004 * 120.00483 * 180.02562 * 15 14 12 38 38 H 1.08004 * 120.00840 * 180.02562 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1265 -1.3073 6 6 3.5418 1.4444 0.1237 7 6 4.3153 0.8169 -0.8348 8 6 5.6931 0.8230 -0.7241 9 6 6.2985 1.4575 0.3447 10 6 7.8006 1.4632 0.4649 11 6 8.3650 2.6905 -0.2535 12 6 9.8672 2.6965 -0.1328 13 1 10.3691 1.9041 0.4024 14 6 10.6008 3.7132 -0.7065 15 7 9.9897 4.6780 -1.3587 16 14 12.4629 3.7204 -0.5575 17 1 12.9019 2.5329 0.2187 18 1 13.0681 3.6766 -1.9129 19 1 12.8989 4.9569 0.1397 20 6 5.5263 2.0855 1.3034 21 6 4.1469 2.0790 1.1937 22 17 3.1763 2.8678 2.3976 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.9988 3.1541 -1.3076 29 1 2.0697 1.5875 -2.1492 30 1 0.5488 2.1252 -1.3969 31 1 3.8430 0.3214 -1.6701 32 1 6.2969 0.3322 -1.4731 33 1 8.0808 1.4977 1.5178 34 1 8.2050 0.5585 0.0109 35 1 8.0850 2.6560 -1.3064 36 1 7.9608 3.5952 0.2005 37 1 10.5058 5.3931 -1.7627 38 1 5.9994 2.5814 2.1381 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260204996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:14 Heat of formation + Delta-G solvation = -38.216262 kcal Electronic energy + Delta-G solvation = -17459.464800 eV Core-core repulsion = 14711.405920 eV Total energy + Delta-G solvation = -2748.058880 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.113 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.79824 -37.67914 -37.35554 -35.60470 -33.68649 -31.68977 -31.23676 -29.49511 -27.09835 -25.24836 -23.99195 -23.37456 -21.90481 -20.64955 -18.59265 -17.39962 -16.94235 -16.52442 -16.31632 -15.52480 -15.09139 -14.92565 -14.79730 -14.49006 -14.21604 -14.10171 -13.63289 -13.25067 -13.03970 -12.93880 -12.85733 -12.72534 -12.42513 -12.33290 -12.29665 -12.11811 -11.75276 -11.67345 -11.50725 -11.38407 -11.25984 -11.09428 -10.57194 -9.75128 -9.36513 -8.20210 -6.32289 0.23931 0.35138 1.15355 1.40419 1.40697 1.54140 2.40519 2.68042 3.12867 3.62559 3.76409 4.02892 4.10729 4.19071 4.33995 4.36802 4.46700 4.56516 4.62621 4.71913 4.77611 4.84094 4.89237 4.96817 5.06156 5.11279 5.16391 5.19523 5.25599 5.32602 5.37093 5.49122 5.51862 5.55924 5.59866 5.81741 5.82948 5.92806 6.21877 6.84793 7.37359 8.91472 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032169 B = 0.003883 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.207382 B = 7209.466104 C = 7518.212645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.056 4.056 4 H 0.081 0.919 5 C -0.143 4.143 6 C -0.081 4.081 7 C -0.097 4.097 8 C -0.119 4.119 9 C -0.073 4.073 10 C -0.065 4.065 11 C 0.037 3.963 12 C -0.543 4.543 13 H 0.064 0.936 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.260 1.260 18 H -0.278 1.278 19 H -0.279 1.279 20 C -0.123 4.123 21 C -0.041 4.041 22 Cl -0.070 7.070 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.135 0.865 33 H 0.062 0.938 34 H 0.071 0.929 35 H -0.007 1.007 36 H -0.013 1.013 37 H 0.263 0.737 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.559 -9.259 2.322 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.075 4.075 4 H 0.099 0.901 5 C -0.200 4.200 6 C -0.082 4.082 7 C -0.115 4.115 8 C -0.137 4.137 9 C -0.073 4.073 10 C -0.103 4.103 11 C 0.000 4.000 12 C -0.581 4.581 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.184 1.184 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.142 4.142 21 C -0.067 4.067 22 Cl -0.041 7.041 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.173 0.827 32 H 0.153 0.847 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.011 0.989 36 H 0.005 0.995 37 H 0.072 0.928 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.624 -9.040 2.347 20.834 hybrid contribution 1.210 0.695 0.214 1.412 sum -17.414 -8.345 2.561 19.479 Atomic orbital electron populations 1.21810 0.94478 1.02231 1.02261 1.21539 0.96774 0.94259 1.02265 1.20314 0.88559 0.98350 1.00237 0.90069 1.21881 1.02314 0.99828 0.95934 1.19936 0.97351 0.97676 0.93233 1.21141 0.92548 0.98970 0.98828 1.21361 0.95515 0.99440 0.97407 1.20139 0.96194 0.96401 0.94590 1.20576 0.89347 0.99476 1.00868 1.18916 0.94605 0.92333 0.94174 1.21730 0.93174 1.08925 1.34243 0.91827 1.25993 1.04050 0.95056 0.94736 1.70116 1.37582 1.12972 1.36686 0.85389 0.79127 0.78388 0.78082 1.18382 1.20321 1.20526 1.20978 0.91927 1.00775 1.00478 1.20871 0.91181 1.01258 0.93390 1.98316 1.70956 1.79290 1.55544 0.91635 0.91917 0.92917 0.90999 0.92735 0.93890 0.91797 0.90314 0.82683 0.84731 0.91917 0.91075 0.98885 0.99489 0.92787 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 71.98 0.70 -1.30 16 2 C -0.11 -1.85 5.14 30.59 0.16 -1.69 16 3 C -0.06 -1.15 2.46 -11.54 -0.03 -1.17 16 4 H 0.08 1.74 6.17 -2.39 -0.01 1.72 16 5 C -0.14 -2.59 8.76 71.98 0.63 -1.96 16 6 C -0.08 -2.14 4.78 -19.84 -0.09 -2.24 16 7 C -0.10 -2.51 8.76 22.27 0.20 -2.32 16 8 C -0.12 -3.73 9.70 22.27 0.22 -3.51 16 9 C -0.07 -2.66 5.13 -19.87 -0.10 -2.76 16 10 C -0.07 -2.72 5.28 29.85 0.16 -2.56 16 11 C 0.04 1.96 4.95 29.85 0.15 2.11 16 12 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 13 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 14 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 15 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 16 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 C -0.12 -4.27 9.49 22.29 0.21 -4.06 16 21 C -0.04 -1.23 6.31 22.33 0.14 -1.09 16 22 Cl -0.07 -1.89 27.01 -2.72 -0.07 -1.96 16 23 H 0.06 0.76 6.56 -2.39 -0.02 0.75 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 1.09 7.57 -2.39 -0.02 1.07 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.07 7.40 -2.39 -0.02 1.06 16 30 H 0.08 1.12 6.56 -2.39 -0.02 1.11 16 31 H 0.16 3.02 7.16 -2.91 -0.02 3.00 16 32 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 33 H 0.06 2.54 8.09 -2.38 -0.02 2.52 16 34 H 0.07 2.78 8.09 -2.39 -0.02 2.76 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 37 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -63.97 324.78 6.28 -57.68 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.02 Total: 7.83 kcal Atomic # 6 Polarization: -55.85 SS G_CDS: 3.02 Total: -52.83 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.28 Total: -57.07 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.07 Total: -1.96 kcal Total: -63.97 6.28 -57.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.466 kcal (2) G-P(sol) polarization free energy of solvation -63.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds