Wall clock time and date at job start Mon Mar 30 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31781 * 122.74524 * 2 1 4 4 C 1.29032 * 117.12166 * 179.97438 * 3 2 1 5 5 C 1.50694 * 124.91925 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.52186 * 0.12764 * 5 4 3 7 7 C 1.53124 * 109.52213 * 120.30892 * 5 4 3 8 8 C 1.53046 * 109.27492 * 177.55971 * 7 5 4 9 9 N 1.46841 * 109.52450 * 300.82568 * 8 7 5 10 10 C 1.46845 * 111.20018 * 61.74185 * 9 8 7 11 11 H 1.08995 * 109.46132 * 58.27139 * 10 9 8 12 12 C 1.50704 * 109.45310 * 178.24862 * 10 9 8 13 13 H 1.07994 * 120.00266 * 120.05147 * 12 10 9 14 14 C 1.37880 * 119.99707 * 300.04943 * 12 10 9 15 15 N 1.31509 * 120.00090 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 119.99706 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47692 * 89.99689 * 16 14 12 18 18 H 1.48505 * 109.47051 * 209.99720 * 16 14 12 19 19 H 1.48506 * 109.47458 * 329.99677 * 16 14 12 20 20 C 1.53036 * 109.52327 * 298.25712 * 10 9 8 21 21 S 1.70982 * 110.16652 * 359.97438 * 4 3 2 22 22 C 1.33638 * 122.75006 * 179.69971 * 2 1 3 23 23 C 1.50697 * 126.03664 * 0.04508 * 22 2 1 24 24 H 1.09001 * 109.46953 * 90.02797 * 1 2 3 25 25 H 1.09000 * 109.47318 * 210.02395 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.03025 * 1 2 3 27 27 H 1.08994 * 109.50529 * 297.50299 * 7 5 4 28 28 H 1.08997 * 109.50077 * 57.62594 * 7 5 4 29 29 H 1.08997 * 109.45962 * 180.80760 * 8 7 5 30 30 H 1.09005 * 109.44967 * 60.83404 * 8 7 5 31 31 H 1.00902 * 110.99985 * 185.84381 * 9 8 7 32 32 H 0.97001 * 120.00087 * 180.02562 * 15 14 12 33 33 H 1.09006 * 109.50463 * 299.23913 * 20 10 9 34 34 H 1.08998 * 109.50020 * 179.12034 * 20 10 9 35 35 H 1.08996 * 109.47841 * 89.99845 * 23 22 2 36 36 H 1.09006 * 109.47378 * 210.00211 * 23 22 2 37 37 H 1.09000 * 109.47440 * 329.99346 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 0.0005 5 6 4.4835 2.1271 0.0001 6 1 3.9396 3.0717 0.0015 7 6 5.3692 2.0434 1.2464 8 6 6.4012 3.1729 1.2096 9 7 7.2195 3.0507 -0.0036 10 6 6.3970 3.1755 -1.2137 11 1 5.8833 4.1368 -1.2061 12 6 7.2799 3.0875 -2.4319 13 1 7.1208 2.3047 -3.1586 14 6 8.2906 4.0065 -2.6185 15 7 8.4839 4.9601 -1.7338 16 14 9.3845 3.8979 -4.1288 17 1 8.7905 4.6991 -5.2290 18 1 10.7328 4.4281 -3.8026 19 1 9.5000 2.4802 -4.5555 20 6 5.3650 2.0461 -1.2493 21 16 3.9333 -0.6731 0.0018 22 6 2.2300 -1.1239 0.0059 23 6 1.6847 -2.5288 0.0123 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8903 0.5134 27 1 4.7518 2.1435 2.1390 28 1 5.8825 1.0820 1.2640 29 1 7.0426 3.1076 2.0884 30 1 5.8872 4.1342 1.2057 31 1 7.9685 3.7268 -0.0041 32 1 9.1948 5.6069 -1.8653 33 1 5.8782 1.0846 -1.2708 34 1 4.7445 2.1481 -2.1396 35 1 1.5539 -2.8725 -1.0137 36 1 2.3826 -3.1871 0.5298 37 1 0.7233 -2.5431 0.5257 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260224373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:55 Heat of formation + Delta-G solvation = 21.035061 kcal Electronic energy + Delta-G solvation = -18030.666805 eV Core-core repulsion = 15319.513713 eV Total energy + Delta-G solvation = -2711.153092 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82077 -37.71853 -33.85215 -32.65117 -30.99468 -29.90871 -29.55663 -25.72872 -25.08976 -24.06575 -21.81665 -21.08797 -19.29122 -18.25153 -17.58644 -16.53575 -15.19882 -15.00295 -14.74197 -14.39515 -13.65238 -13.54670 -13.26281 -13.15518 -12.95786 -12.81531 -12.54243 -12.44792 -12.08323 -12.01954 -11.78586 -10.97061 -10.95591 -10.88040 -10.63077 -10.43536 -10.33689 -9.88938 -9.51448 -9.29706 -9.10809 -8.93923 -8.61026 -8.30457 -6.90218 -6.11020 -4.13937 0.91615 1.56629 2.01950 2.96889 3.29428 3.36322 3.40487 4.25059 4.40809 4.94272 5.05409 5.12535 5.16228 5.30490 5.39507 5.41165 5.52171 5.57786 5.71437 5.74839 5.82910 5.97925 6.03456 6.14584 6.21487 6.40489 6.41958 6.53045 6.69318 6.74821 6.84086 6.93104 7.49632 7.87046 8.00780 8.15570 8.65247 8.97117 9.10950 9.54108 10.99252 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030623 B = 0.004764 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.113523 B = 5875.810448 C = 6195.656403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.060 3.940 3 N -0.482 5.482 4 C 0.081 3.919 5 C -0.019 4.019 6 H 0.091 0.909 7 C -0.102 4.102 8 C 0.057 3.943 9 N -0.685 5.685 10 C 0.218 3.782 11 H -0.002 1.002 12 C -0.504 4.504 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.902 5.902 16 Si 0.899 3.101 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.094 4.094 21 S 0.125 5.875 22 C -0.253 4.253 23 C -0.068 4.068 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.015 0.985 31 H 0.365 0.635 32 H 0.264 0.736 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 -11.010 5.543 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.072 4.072 3 N -0.196 5.196 4 C -0.197 4.197 5 C -0.041 4.041 6 H 0.109 0.891 7 C -0.141 4.141 8 C -0.073 4.073 9 N -0.322 5.322 10 C 0.110 3.890 11 H 0.016 0.984 12 C -0.543 4.543 13 H 0.079 0.921 14 C -0.135 4.135 15 N -0.542 5.542 16 Si 0.727 3.273 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.133 4.133 21 S 0.382 5.618 22 C -0.374 4.374 23 C -0.127 4.127 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.190 0.810 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.630 -11.548 5.573 16.655 hybrid contribution -0.483 1.066 -0.774 1.403 sum -11.113 -10.482 4.799 16.012 Atomic orbital electron populations 1.20317 0.87707 1.02841 1.02582 1.20131 0.97882 0.86554 1.02619 1.66208 1.04705 1.31307 1.17393 1.27300 0.93731 0.98219 1.00411 1.20165 0.92355 0.93016 0.98576 0.89063 1.21665 0.96502 1.00725 0.95210 1.21763 0.94925 0.94953 0.95704 1.60791 1.13609 1.57849 0.99998 1.18958 0.90180 0.90953 0.88860 0.98415 1.21152 1.15138 1.12847 1.05165 0.92139 1.24993 0.97207 0.94711 0.96601 1.69662 1.32638 1.16310 1.35605 0.86486 0.79768 0.78343 0.82726 1.20774 1.21189 1.19798 1.21797 0.96285 1.01822 0.93417 1.84017 1.05703 1.03525 1.68514 1.25664 0.96020 1.00659 1.15031 1.20154 1.00721 0.89389 1.02480 0.90935 0.91055 0.90882 0.92694 0.91426 0.92399 0.96642 0.81025 0.92595 0.91976 0.92694 0.90969 0.91453 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.07 36.01 0.36 -0.45 16 2 C 0.06 0.89 6.74 -84.22 -0.57 0.32 16 3 N -0.48 -8.49 10.53 -8.05 -0.08 -8.57 16 4 C 0.08 1.43 6.04 -13.46 -0.08 1.34 16 5 C -0.02 -0.36 2.68 -91.65 -0.25 -0.60 16 6 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 7 C -0.10 -1.80 5.30 -26.64 -0.14 -1.94 16 8 C 0.06 1.13 6.55 -3.83 -0.03 1.10 16 9 N -0.68 -16.22 6.49 -107.99 -0.70 -16.92 16 10 C 0.22 5.45 2.40 -68.87 -0.17 5.28 16 11 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 12 C -0.50 -13.72 8.76 -34.44 -0.30 -14.02 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.07 1.79 5.32 -17.82 -0.09 1.70 16 15 N -0.90 -25.01 11.48 55.43 0.64 -24.37 16 16 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.09 -2.01 4.52 -26.65 -0.12 -2.13 16 21 S 0.13 1.89 22.41 -107.50 -2.41 -0.52 16 22 C -0.25 -3.40 6.59 -35.92 -0.24 -3.64 16 23 C -0.07 -0.64 10.10 36.00 0.36 -0.27 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.59 6.71 -51.93 -0.35 0.24 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.19 7.85 -51.93 -0.41 0.78 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.37 9.40 6.65 -39.29 -0.26 9.14 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.06 1.33 7.86 -51.93 -0.41 0.92 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.57 6.76 -51.93 -0.35 0.22 16 LS Contribution 310.12 15.07 4.67 4.67 Total: -1.00 -28.86 310.12 -9.70 -38.56 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.54 Total: 4.40 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.25 Total: -13.30 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.15 Total: -49.86 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.41 Total: -0.52 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.86 -9.70 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.597 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds