Wall clock time and date at job start Mon Mar 30 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31781 * 122.74524 * 2 1 4 4 C 1.29032 * 117.12166 * 179.97438 * 3 2 1 5 5 C 1.50694 * 124.91925 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.52186 * 0.12764 * 5 4 3 7 7 C 1.53124 * 109.52213 * 120.30892 * 5 4 3 8 8 C 1.53046 * 109.27492 * 177.55971 * 7 5 4 9 9 N 1.46841 * 109.52450 * 300.82568 * 8 7 5 10 10 C 1.46845 * 111.20018 * 61.74185 * 9 8 7 11 11 H 1.08995 * 109.46132 * 58.27139 * 10 9 8 12 12 C 1.50704 * 109.45310 * 178.24862 * 10 9 8 13 13 H 1.07994 * 120.00266 * 120.05147 * 12 10 9 14 14 C 1.37880 * 119.99707 * 300.04943 * 12 10 9 15 15 N 1.31509 * 120.00090 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 119.99706 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47692 * 89.99689 * 16 14 12 18 18 H 1.48505 * 109.47051 * 209.99720 * 16 14 12 19 19 H 1.48506 * 109.47458 * 329.99677 * 16 14 12 20 20 C 1.53036 * 109.52327 * 298.25712 * 10 9 8 21 21 S 1.70982 * 110.16652 * 359.97438 * 4 3 2 22 22 C 1.33638 * 122.75006 * 179.69971 * 2 1 3 23 23 C 1.50697 * 126.03664 * 0.04508 * 22 2 1 24 24 H 1.09001 * 109.46953 * 90.02797 * 1 2 3 25 25 H 1.09000 * 109.47318 * 210.02395 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.03025 * 1 2 3 27 27 H 1.08994 * 109.50529 * 297.50299 * 7 5 4 28 28 H 1.08997 * 109.50077 * 57.62594 * 7 5 4 29 29 H 1.08997 * 109.45962 * 180.80760 * 8 7 5 30 30 H 1.09005 * 109.44967 * 60.83404 * 8 7 5 31 31 H 1.00902 * 110.99985 * 185.84381 * 9 8 7 32 32 H 0.97001 * 120.00087 * 180.02562 * 15 14 12 33 33 H 1.09006 * 109.50463 * 299.23913 * 20 10 9 34 34 H 1.08998 * 109.50020 * 179.12034 * 20 10 9 35 35 H 1.08996 * 109.47841 * 89.99845 * 23 22 2 36 36 H 1.09006 * 109.47378 * 210.00211 * 23 22 2 37 37 H 1.09000 * 109.47440 * 329.99346 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 0.0005 5 6 4.4835 2.1271 0.0001 6 1 3.9396 3.0717 0.0015 7 6 5.3692 2.0434 1.2464 8 6 6.4012 3.1729 1.2096 9 7 7.2195 3.0507 -0.0036 10 6 6.3970 3.1755 -1.2137 11 1 5.8833 4.1368 -1.2061 12 6 7.2799 3.0875 -2.4319 13 1 7.1208 2.3047 -3.1586 14 6 8.2906 4.0065 -2.6185 15 7 8.4839 4.9601 -1.7338 16 14 9.3845 3.8979 -4.1288 17 1 8.7905 4.6991 -5.2290 18 1 10.7328 4.4281 -3.8026 19 1 9.5000 2.4802 -4.5555 20 6 5.3650 2.0461 -1.2493 21 16 3.9333 -0.6731 0.0018 22 6 2.2300 -1.1239 0.0059 23 6 1.6847 -2.5288 0.0123 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8903 0.5134 27 1 4.7518 2.1435 2.1390 28 1 5.8825 1.0820 1.2640 29 1 7.0426 3.1076 2.0884 30 1 5.8872 4.1342 1.2057 31 1 7.9685 3.7268 -0.0041 32 1 9.1948 5.6069 -1.8653 33 1 5.8782 1.0846 -1.2708 34 1 4.7445 2.1481 -2.1396 35 1 1.5539 -2.8725 -1.0137 36 1 2.3826 -3.1871 0.5298 37 1 0.7233 -2.5431 0.5257 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260224373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:55 Heat of formation + Delta-G solvation = 2.895146 kcal Electronic energy + Delta-G solvation = -18031.453411 eV Core-core repulsion = 15319.513713 eV Total energy + Delta-G solvation = -2711.939698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.02634 -39.36363 -35.41653 -34.25326 -32.47528 -31.73102 -30.46966 -27.34807 -26.55646 -25.35167 -23.39430 -22.72134 -20.82497 -19.54615 -18.90381 -18.37666 -17.06912 -16.25142 -16.07831 -15.99112 -15.39120 -14.84223 -14.64428 -14.41795 -14.25802 -13.86012 -13.78226 -13.73109 -13.65856 -13.22295 -12.83314 -12.82429 -12.63925 -12.42456 -12.20013 -12.04825 -11.86083 -11.67662 -11.23598 -11.00226 -10.67101 -10.56592 -10.13613 -9.45536 -8.82558 -8.17934 -6.29215 -0.25900 0.41404 0.84856 1.42976 1.44370 1.55021 1.80047 2.42826 3.04456 3.08455 3.82089 3.87575 3.99399 4.07248 4.14523 4.19648 4.42576 4.47593 4.61012 4.63260 4.69337 4.81157 4.85541 4.91183 4.92278 4.92715 5.02248 5.05814 5.06459 5.16847 5.24088 5.46761 5.50768 5.77664 6.14228 6.62986 6.83017 6.95864 7.11607 7.42649 8.91072 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030623 B = 0.004764 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.113523 B = 5875.810448 C = 6195.656403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.032 3.968 3 N -0.503 5.503 4 C 0.048 3.952 5 C -0.010 4.010 6 H 0.074 0.926 7 C -0.092 4.092 8 C 0.055 3.945 9 N -0.689 5.689 10 C 0.219 3.781 11 H -0.041 1.041 12 C -0.530 4.530 13 H 0.056 0.944 14 C 0.022 3.978 15 N -0.924 5.924 16 Si 0.963 3.037 17 H -0.278 1.278 18 H -0.280 1.280 19 H -0.269 1.269 20 C -0.081 4.081 21 S 0.133 5.867 22 C -0.233 4.233 23 C -0.071 4.071 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.005 0.995 31 H 0.351 0.649 32 H 0.266 0.734 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.431 -13.282 5.875 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 N -0.217 5.217 4 C -0.229 4.229 5 C -0.032 4.032 6 H 0.092 0.908 7 C -0.131 4.131 8 C -0.075 4.075 9 N -0.325 5.325 10 C 0.111 3.889 11 H -0.023 1.023 12 C -0.569 4.569 13 H 0.074 0.926 14 C -0.177 4.177 15 N -0.564 5.564 16 Si 0.788 3.212 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.194 1.194 20 C -0.120 4.120 21 S 0.389 5.611 22 C -0.354 4.354 23 C -0.130 4.130 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.024 0.976 31 H 0.173 0.827 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.604 -13.825 5.915 18.994 hybrid contribution -0.260 1.724 -0.855 1.942 sum -11.864 -12.101 5.060 17.685 Atomic orbital electron populations 1.20433 0.85064 1.04096 1.03507 1.20719 0.99616 0.86102 1.03456 1.66187 1.05017 1.33378 1.17168 1.26857 0.93723 0.98928 1.03374 1.19869 0.92366 0.93325 0.97631 0.90816 1.21594 0.95944 0.99879 0.95673 1.21905 0.95395 0.95457 0.94773 1.60764 1.13664 1.57103 1.00963 1.18850 0.90503 0.90394 0.89152 1.02349 1.21470 1.16039 1.13157 1.06233 0.92592 1.25744 0.98357 0.94289 0.99350 1.69774 1.33021 1.16673 1.36950 0.85488 0.77994 0.78405 0.79287 1.20365 1.20583 1.19359 1.21557 0.95647 1.00122 0.94672 1.83899 1.07455 1.01640 1.68094 1.26247 0.94595 1.02421 1.12144 1.20386 1.01985 0.86688 1.03930 0.90103 0.88061 0.91402 0.90335 0.90907 0.90105 0.97635 0.82675 0.92443 0.92049 0.93746 0.89508 0.90257 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.07 71.24 0.72 -0.64 16 2 C 0.03 0.88 6.74 41.52 0.28 1.16 16 3 N -0.50 -17.43 10.53 -179.40 -1.89 -19.32 16 4 C 0.05 1.68 6.04 88.52 0.53 2.22 16 5 C -0.01 -0.38 2.68 -11.46 -0.03 -0.41 16 6 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 7 C -0.09 -3.21 5.30 30.65 0.16 -3.05 16 8 C 0.05 2.18 6.55 86.33 0.57 2.74 16 9 N -0.69 -33.49 6.49 -495.56 -3.22 -36.70 16 10 C 0.22 11.40 2.40 44.19 0.11 11.50 16 11 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 12 C -0.53 -29.69 8.76 25.60 0.22 -29.46 16 13 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 14 C 0.02 1.20 5.32 84.66 0.45 1.65 16 15 N -0.92 -52.34 11.48 21.45 0.25 -52.10 16 16 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 C -0.08 -3.57 4.52 30.64 0.14 -3.43 16 21 S 0.13 3.82 22.41 -56.49 -1.27 2.56 16 22 C -0.23 -5.64 6.59 24.64 0.16 -5.48 16 23 C -0.07 -1.03 10.10 71.23 0.72 -0.31 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.10 1.26 6.71 -2.39 -0.02 1.25 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.07 2.47 7.85 -2.39 -0.02 2.46 16 29 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.01 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.35 18.61 6.65 -89.69 -0.60 18.02 16 32 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.06 2.68 7.86 -2.38 -0.02 2.66 16 34 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.10 1.01 6.76 -2.39 -0.02 1.00 16 Total: -1.00 -63.66 310.12 0.40 -63.26 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.47 Total: 20.18 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 4.03 Total: -23.51 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -4.86 Total: -108.12 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.27 Total: 2.56 kcal Total: -63.66 0.40 -63.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.153 kcal (2) G-P(sol) polarization free energy of solvation -63.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds