Wall clock time and date at job start Mon Mar 30 2020 06:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29026 * 124.92033 * 2 1 4 4 C 1.31786 * 117.13007 * 180.02562 * 3 2 1 5 5 C 1.33635 * 114.49795 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03971 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.46676 * 90.00145 * 6 5 4 8 8 C 1.46840 * 111.00148 * 45.79609 * 7 6 5 9 9 C 1.53038 * 109.52495 * 185.83478 * 8 7 6 10 10 C 1.53113 * 109.27930 * 300.82146 * 9 8 7 11 11 C 1.53120 * 109.16305 * 57.65182 * 10 9 8 12 12 C 1.46854 * 110.99566 * 170.00299 * 7 6 5 13 13 H 1.08995 * 109.45969 * 294.17781 * 12 7 6 14 14 C 1.50699 * 109.46121 * 54.14549 * 12 7 6 15 15 H 1.08003 * 119.99785 * 35.30217 * 14 12 7 16 16 C 1.37877 * 119.99697 * 215.29695 * 14 12 7 17 17 N 1.31514 * 119.99859 * 185.83113 * 16 14 12 18 18 Si 1.86797 * 120.00199 * 5.83682 * 16 14 12 19 19 H 1.48500 * 109.47019 * 84.77413 * 18 16 14 20 20 H 1.48500 * 109.47298 * 204.77240 * 18 16 14 21 21 H 1.48502 * 109.47012 * 324.77603 * 18 16 14 22 22 S 1.70980 * 124.91759 * 180.31885 * 2 1 3 23 23 H 1.08999 * 109.47315 * 89.97494 * 1 2 3 24 24 H 1.09003 * 109.47191 * 209.97623 * 1 2 3 25 25 H 1.08999 * 109.46827 * 329.97381 * 1 2 3 26 26 H 1.07994 * 122.75049 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.46742 * 330.00542 * 6 5 4 28 28 H 1.08998 * 109.47420 * 210.00550 * 6 5 4 29 29 H 1.09003 * 109.46493 * 305.85170 * 8 7 6 30 30 H 1.09007 * 109.46485 * 65.81992 * 8 7 6 31 31 H 1.09003 * 109.50391 * 180.87375 * 9 8 7 32 32 H 1.09000 * 109.53484 * 60.78028 * 9 8 7 33 33 H 1.09001 * 109.52263 * 297.74614 * 10 9 8 34 34 H 1.09000 * 109.52727 * 177.55755 * 10 9 8 35 35 H 1.08999 * 109.50586 * 182.40744 * 11 10 9 36 36 H 1.09003 * 109.50273 * 62.28541 * 11 10 9 37 37 H 0.96996 * 120.00137 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3574 -0.8995 -0.0004 7 7 5.8194 -1.0615 1.3846 8 6 4.8092 -1.7485 2.1994 9 6 5.2600 -1.7704 3.6617 10 6 6.6050 -2.4945 3.7654 11 6 7.6267 -1.7878 2.8702 12 6 7.1073 -1.7656 1.4308 13 1 6.9752 -2.7878 1.0765 14 6 8.1008 -1.0533 0.5495 15 1 8.0768 0.0235 0.4693 16 6 9.0404 -1.7763 -0.1544 17 7 9.9784 -1.1514 -0.8321 18 14 8.9810 -3.6433 -0.1456 19 1 8.0371 -4.1134 -1.1912 20 1 10.3362 -4.1830 -0.4234 21 1 8.5223 -4.1177 1.1847 22 16 2.4856 -1.4020 -0.0078 23 1 -0.3634 0.0004 -1.0276 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 4.2532 1.7000 -0.0002 27 1 5.9949 -0.1799 -0.5142 28 1 5.4057 -1.8595 -0.5143 29 1 3.8586 -1.2211 2.1202 30 1 4.6879 -2.7710 1.8414 31 1 4.5173 -2.2940 4.2637 32 1 5.3680 -0.7484 4.0251 33 1 6.4883 -3.5281 3.4393 34 1 6.9509 -2.4746 4.7988 35 1 8.5750 -2.3240 2.9066 36 1 7.7721 -0.7659 3.2204 37 1 10.6392 -1.6600 -1.3275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260270939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:44 Heat of formation + Delta-G solvation = 19.745489 kcal Electronic energy + Delta-G solvation = -18484.007684 eV Core-core repulsion = 15772.798671 eV Total energy + Delta-G solvation = -2711.209012 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84167 -39.79187 -35.19379 -34.88761 -32.79540 -32.00032 -29.93349 -27.40227 -26.24375 -24.85252 -23.40149 -22.68844 -20.66515 -19.94048 -19.04409 -18.91955 -17.24930 -16.38878 -16.06576 -15.67398 -15.57451 -15.26883 -14.87940 -14.62040 -14.58325 -14.22164 -14.00691 -13.62124 -13.36952 -13.16916 -12.95099 -12.72081 -12.62815 -12.52671 -12.19112 -11.86934 -11.76607 -11.51569 -11.23740 -10.88268 -10.73310 -10.61466 -10.12807 -9.73589 -8.99636 -8.30675 -6.33278 -0.27668 0.34357 0.75768 1.27678 1.30812 1.40202 1.83008 2.29696 2.99996 3.23740 3.30476 3.86215 4.03469 4.08059 4.15397 4.21291 4.30325 4.46916 4.62887 4.65446 4.69864 4.70938 4.77766 4.86656 4.90063 5.01871 5.06125 5.12685 5.17868 5.24225 5.27993 5.36509 5.51777 5.71784 6.07534 6.30043 6.66816 6.75408 6.75756 7.33015 8.85898 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.006370 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.616607 B = 4394.819444 C = 4916.915191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.044 3.956 3 N -0.499 5.499 4 C 0.042 3.958 5 C -0.222 4.222 6 C 0.154 3.846 7 N -0.531 5.531 8 C 0.048 3.952 9 C -0.106 4.106 10 C -0.120 4.120 11 C -0.104 4.104 12 C 0.190 3.810 13 H -0.004 1.004 14 C -0.501 4.501 15 H 0.038 0.962 16 C 0.022 3.978 17 N -0.942 5.942 18 Si 0.927 3.073 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.247 1.247 22 S 0.132 5.868 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.172 0.828 27 H 0.078 0.922 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.021 0.979 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.513 -3.984 5.079 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.234 4.234 3 N -0.215 5.215 4 C -0.109 4.109 5 C -0.343 4.343 6 C 0.025 3.975 7 N -0.257 5.257 8 C -0.081 4.081 9 C -0.144 4.144 10 C -0.157 4.157 11 C -0.143 4.143 12 C 0.083 3.917 13 H 0.014 0.986 14 C -0.540 4.540 15 H 0.057 0.943 16 C -0.177 4.177 17 N -0.582 5.582 18 Si 0.751 3.249 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.171 1.171 22 S 0.386 5.614 23 H 0.120 0.880 24 H 0.121 0.879 25 H 0.112 0.888 26 H 0.189 0.811 27 H 0.096 0.904 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.763 -4.093 5.158 19.885 hybrid contribution 1.466 -0.476 -0.915 1.792 sum -17.297 -4.570 4.243 18.386 Atomic orbital electron populations 1.20644 0.82240 1.05484 1.05211 1.27782 1.03285 0.90501 1.01793 1.66360 1.04748 1.32617 1.17764 1.21732 0.91202 0.96143 1.01784 1.25903 0.99699 0.96857 1.11818 1.20055 0.87444 0.98988 0.91059 1.62107 1.03177 1.51505 1.08878 1.22311 0.95305 0.95724 0.94730 1.21531 0.96970 1.01115 0.94781 1.21662 0.95526 0.98612 0.99936 1.21672 0.97564 0.99914 0.95114 1.19615 0.86792 0.91013 0.94270 0.98599 1.21047 1.13471 0.94002 1.25486 0.94339 1.25728 0.94652 1.02553 0.94722 1.70030 1.16746 1.37654 1.33750 0.86039 0.77560 0.81375 0.79888 1.19722 1.21051 1.17093 1.83757 0.96586 1.12215 1.68867 0.88046 0.87895 0.88753 0.81072 0.90376 0.95635 0.90846 0.96034 0.89316 0.91868 0.92818 0.90374 0.93654 0.92935 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.46 71.23 0.75 -0.33 16 2 C 0.04 1.07 7.39 88.52 0.65 1.73 16 3 N -0.50 -15.18 10.54 -191.46 -2.02 -17.19 16 4 C 0.04 1.38 11.25 83.65 0.94 2.32 16 5 C -0.22 -7.42 4.49 24.64 0.11 -7.31 16 6 C 0.15 6.22 5.20 85.56 0.44 6.67 16 7 N -0.53 -21.84 4.63 -880.03 -4.07 -25.91 16 8 C 0.05 1.59 4.74 86.33 0.41 2.00 16 9 C -0.11 -3.11 6.09 30.64 0.19 -2.92 16 10 C -0.12 -3.79 6.00 30.67 0.18 -3.61 16 11 C -0.10 -4.29 5.36 30.65 0.16 -4.12 16 12 C 0.19 8.77 1.48 44.19 0.07 8.84 16 13 H 0.00 -0.16 5.24 -2.39 -0.01 -0.18 16 14 C -0.50 -27.91 7.58 25.60 0.19 -27.72 16 15 H 0.04 2.42 8.00 -2.91 -0.02 2.40 16 16 C 0.02 1.23 5.47 84.65 0.46 1.70 16 17 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 18 Si 0.93 43.51 27.02 68.60 1.85 45.36 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.25 -10.81 6.78 99.48 0.67 -10.14 16 22 S 0.13 3.39 21.66 -56.49 -1.22 2.17 16 23 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.17 5.62 8.06 -2.91 -0.02 5.60 16 27 H 0.08 3.57 7.31 -2.39 -0.02 3.55 16 28 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 29 H 0.07 2.31 5.55 -2.39 -0.01 2.30 16 30 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -65.52 306.27 0.41 -65.11 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.01 Total: 10.72 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 4.56 Total: -22.76 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -5.79 Total: -100.59 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.85 Total: 45.36 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.22 Total: 2.17 kcal Total: -65.52 0.41 -65.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.851 kcal (2) G-P(sol) polarization free energy of solvation -65.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds