Wall clock time and date at job start Mon Mar 30 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31784 * 122.75076 * 2 1 4 4 C 1.29024 * 117.12737 * 180.02562 * 3 2 1 5 5 S 1.70974 * 110.16811 * 359.72377 * 4 3 2 6 6 C 1.33641 * 122.75343 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.03540 * 359.97438 * 6 2 1 8 8 H 1.09004 * 109.47115 * 14.99966 * 7 6 2 9 9 C 1.50702 * 109.47207 * 255.00110 * 7 6 2 10 10 H 1.08002 * 120.00299 * 240.00459 * 9 7 6 11 11 C 1.37884 * 119.99942 * 59.72017 * 9 7 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 N 1.46895 * 109.47416 * 135.00309 * 7 6 2 18 18 C 1.46850 * 110.99713 * 304.20944 * 17 7 6 19 19 C 1.53043 * 109.52493 * 174.15679 * 18 17 7 20 20 C 1.53123 * 109.27454 * 59.18073 * 19 18 17 21 21 C 1.53117 * 109.15860 * 302.34592 * 20 19 18 22 22 C 1.46839 * 111.00568 * 180.02562 * 17 7 6 23 23 H 1.09008 * 109.46584 * 269.99837 * 1 2 3 24 24 H 1.08993 * 109.47125 * 30.00201 * 1 2 3 25 25 H 1.08997 * 109.46966 * 150.00381 * 1 2 3 26 26 H 1.08008 * 124.91358 * 179.97438 * 4 3 2 27 27 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 28 28 H 1.08995 * 109.46613 * 294.17691 * 18 17 7 29 29 H 1.09005 * 109.46319 * 54.14329 * 18 17 7 30 30 H 1.08991 * 109.50448 * 299.24092 * 19 18 17 31 31 H 1.08996 * 109.50305 * 179.11682 * 19 18 17 32 32 H 1.08998 * 109.51973 * 182.43988 * 20 19 18 33 33 H 1.08995 * 109.57542 * 62.28197 * 20 19 18 34 34 H 1.09000 * 109.50740 * 297.71057 * 21 20 19 35 35 H 1.09005 * 109.50093 * 177.59609 * 21 20 19 36 36 H 1.09003 * 109.45962 * 305.85616 * 22 17 7 37 37 H 1.08999 * 109.46229 * 65.82968 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 -0.0005 5 16 3.9333 -0.6730 0.0067 6 6 2.2300 -1.1239 -0.0005 7 6 1.6848 -2.5288 -0.0006 8 1 0.6278 -2.5084 -0.2662 9 6 1.8463 -3.1305 1.3716 10 1 2.4364 -4.0255 1.5029 11 6 1.2456 -2.5350 2.4606 12 7 0.5271 -1.4452 2.3008 13 14 1.4522 -3.2765 4.1626 14 1 2.6498 -2.6898 4.8160 15 1 0.2481 -2.9820 4.9803 16 1 1.6230 -4.7469 4.0447 17 7 2.4202 -3.3395 -0.9803 18 6 2.3682 -2.7279 -2.3143 19 6 3.2617 -3.5172 -3.2740 20 6 2.7768 -4.9683 -3.3380 21 6 2.7948 -5.5667 -1.9287 22 6 1.9146 -4.7178 -1.0085 23 1 -0.3633 0.0000 1.0278 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 4.2059 1.8028 -0.0010 27 1 0.1042 -1.0264 3.0668 28 1 1.3416 -2.7410 -2.6802 29 1 2.7195 -1.6977 -2.2555 30 1 4.2909 -3.4929 -2.9162 31 1 3.2106 -3.0724 -4.2677 32 1 3.4365 -5.5444 -3.9869 33 1 1.7614 -4.9969 -3.7330 34 1 3.8167 -5.5747 -1.5497 35 1 2.4102 -6.5861 -1.9614 36 1 1.9362 -5.1333 -0.0010 37 1 0.8902 -4.7213 -1.3809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260277853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:13 Heat of formation + Delta-G solvation = 40.755929 kcal Electronic energy + Delta-G solvation = -19119.253124 eV Core-core repulsion = 16408.955193 eV Total energy + Delta-G solvation = -2710.297931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.96286 -38.00903 -34.27920 -32.01078 -30.64698 -30.16908 -27.88951 -25.52836 -24.05518 -23.40187 -22.30943 -21.01103 -19.13370 -17.70765 -17.21414 -16.21704 -15.43901 -14.77700 -14.39860 -14.04564 -13.89586 -13.54653 -13.17703 -12.86320 -12.54670 -12.32677 -12.09331 -11.76993 -11.60737 -11.32164 -11.12367 -10.86019 -10.78621 -10.70167 -10.36567 -10.20470 -10.11980 -9.92619 -9.73671 -9.43518 -8.69209 -8.57487 -7.98038 -7.36620 -7.29426 -6.10857 -4.23246 1.95727 2.56883 3.01918 3.24554 3.31881 3.33600 4.03615 4.29855 4.81904 5.16778 5.26144 5.28413 5.31233 5.36295 5.74193 5.93130 6.02209 6.06247 6.16102 6.23121 6.26239 6.29455 6.43138 6.49080 6.55807 6.57868 6.70329 6.78310 6.82861 7.05339 7.17459 7.23423 7.55821 7.67219 7.93155 8.06938 8.36107 8.81227 8.88378 9.43806 10.89211 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.010398 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.471367 B = 2692.271048 C = 3793.738625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.047 3.953 3 N -0.468 5.468 4 C -0.044 4.044 5 S 0.089 5.911 6 C -0.108 4.108 7 C 0.281 3.719 8 H 0.026 0.974 9 C -0.509 4.509 10 H 0.070 0.930 11 C 0.068 3.932 12 N -0.870 5.870 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 N -0.531 5.531 18 C 0.052 3.948 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.116 4.116 22 C 0.066 3.934 23 H 0.101 0.899 24 H 0.033 0.967 25 H 0.053 0.947 26 H 0.177 0.823 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -2.573 -7.521 8.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.082 4.082 3 N -0.183 5.183 4 C -0.341 4.341 5 S 0.340 5.660 6 C -0.229 4.229 7 C 0.172 3.828 8 H 0.043 0.957 9 C -0.548 4.548 10 H 0.088 0.912 11 C -0.137 4.137 12 N -0.507 5.507 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 N -0.256 5.256 18 C -0.077 4.077 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.062 4.062 23 H 0.119 0.881 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.194 0.806 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.590 -2.397 -7.258 8.916 hybrid contribution -1.507 -0.013 0.936 1.774 sum 3.083 -2.410 -6.323 7.436 Atomic orbital electron populations 1.20221 0.87869 0.98669 1.04229 1.19833 0.97774 0.85743 1.04859 1.66037 1.05055 1.32835 1.14360 1.27743 0.95430 1.00192 1.10753 1.83655 1.10906 1.01778 1.69636 1.26057 0.92131 1.01269 1.03469 1.17829 0.90761 0.82984 0.91243 0.95667 1.21006 1.32402 1.11117 0.90243 0.91164 1.24983 0.94700 0.94787 0.99204 1.69976 1.31748 1.18472 1.30489 0.86497 0.77617 0.79521 0.83839 1.20662 1.21237 1.19797 1.61939 1.56759 1.01991 1.04901 1.22064 0.97102 0.98467 0.90023 1.21552 1.00370 0.95075 0.98089 1.21557 1.00454 0.96365 0.97195 1.21617 1.01117 0.97825 0.94866 1.21918 0.94703 0.89263 1.00286 0.88074 0.94837 0.92858 0.80609 0.92765 0.96209 0.91363 0.91384 0.92639 0.92759 0.92813 0.91497 0.92517 0.89517 0.96210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.12 9.13 36.00 0.33 -0.79 16 2 C 0.05 1.11 5.98 -84.22 -0.50 0.61 16 3 N -0.47 -10.63 10.53 -11.90 -0.13 -10.75 16 4 C -0.04 -0.88 12.23 51.58 0.63 -0.25 16 5 S 0.09 1.83 22.52 -107.50 -2.42 -0.59 16 6 C -0.11 -2.49 3.04 -35.92 -0.11 -2.60 16 7 C 0.28 6.56 1.78 -70.02 -0.12 6.44 16 8 H 0.03 0.66 6.41 -51.93 -0.33 0.33 16 9 C -0.51 -12.90 7.85 -34.44 -0.27 -13.17 16 10 H 0.07 1.80 6.71 -52.49 -0.35 1.45 16 11 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 12 N -0.87 -22.81 8.73 55.43 0.48 -22.33 16 13 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 N -0.53 -10.73 4.42 -229.48 -1.01 -11.74 16 18 C 0.05 0.95 5.22 -3.83 -0.02 0.93 16 19 C -0.11 -1.67 6.09 -26.64 -0.16 -1.83 16 20 C -0.12 -1.61 6.00 -26.61 -0.16 -1.77 16 21 C -0.12 -1.73 6.09 -26.65 -0.16 -1.89 16 22 C 0.07 1.22 5.25 -3.84 -0.02 1.20 16 23 H 0.10 2.40 6.09 -51.92 -0.32 2.09 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 1.17 6.61 -51.93 -0.34 0.82 16 26 H 0.18 2.80 8.06 -52.48 -0.42 2.38 16 27 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 1.32 6.22 -51.93 -0.32 0.99 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.71 6.30 -51.93 -0.33 1.39 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 299.00 15.07 4.51 4.51 Total: -1.00 -27.01 299.00 -9.62 -36.63 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.36 Total: 0.23 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.67 Total: -11.48 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.66 Total: -44.82 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.42 Total: -0.59 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.01 -9.62 -36.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.384 kcal (2) G-P(sol) polarization free energy of solvation -27.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds