Wall clock time and date at job start Mon Mar 30 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31784 * 122.75076 * 2 1 4 4 C 1.29024 * 117.12737 * 180.02562 * 3 2 1 5 5 S 1.70974 * 110.16811 * 359.72377 * 4 3 2 6 6 C 1.33641 * 122.75343 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.03540 * 359.97438 * 6 2 1 8 8 H 1.09004 * 109.47115 * 14.99966 * 7 6 2 9 9 C 1.50702 * 109.47207 * 255.00110 * 7 6 2 10 10 H 1.08002 * 120.00299 * 240.00459 * 9 7 6 11 11 C 1.37884 * 119.99942 * 59.72017 * 9 7 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 N 1.46895 * 109.47416 * 135.00309 * 7 6 2 18 18 C 1.46850 * 110.99713 * 304.20944 * 17 7 6 19 19 C 1.53043 * 109.52493 * 174.15679 * 18 17 7 20 20 C 1.53123 * 109.27454 * 59.18073 * 19 18 17 21 21 C 1.53117 * 109.15860 * 302.34592 * 20 19 18 22 22 C 1.46839 * 111.00568 * 180.02562 * 17 7 6 23 23 H 1.09008 * 109.46584 * 269.99837 * 1 2 3 24 24 H 1.08993 * 109.47125 * 30.00201 * 1 2 3 25 25 H 1.08997 * 109.46966 * 150.00381 * 1 2 3 26 26 H 1.08008 * 124.91358 * 179.97438 * 4 3 2 27 27 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 28 28 H 1.08995 * 109.46613 * 294.17691 * 18 17 7 29 29 H 1.09005 * 109.46319 * 54.14329 * 18 17 7 30 30 H 1.08991 * 109.50448 * 299.24092 * 19 18 17 31 31 H 1.08996 * 109.50305 * 179.11682 * 19 18 17 32 32 H 1.08998 * 109.51973 * 182.43988 * 20 19 18 33 33 H 1.08995 * 109.57542 * 62.28197 * 20 19 18 34 34 H 1.09000 * 109.50740 * 297.71057 * 21 20 19 35 35 H 1.09005 * 109.50093 * 177.59609 * 21 20 19 36 36 H 1.09003 * 109.45962 * 305.85616 * 22 17 7 37 37 H 1.08999 * 109.46229 * 65.82968 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 -0.0005 5 16 3.9333 -0.6730 0.0067 6 6 2.2300 -1.1239 -0.0005 7 6 1.6848 -2.5288 -0.0006 8 1 0.6278 -2.5084 -0.2662 9 6 1.8463 -3.1305 1.3716 10 1 2.4364 -4.0255 1.5029 11 6 1.2456 -2.5350 2.4606 12 7 0.5271 -1.4452 2.3008 13 14 1.4522 -3.2765 4.1626 14 1 2.6498 -2.6898 4.8160 15 1 0.2481 -2.9820 4.9803 16 1 1.6230 -4.7469 4.0447 17 7 2.4202 -3.3395 -0.9803 18 6 2.3682 -2.7279 -2.3143 19 6 3.2617 -3.5172 -3.2740 20 6 2.7768 -4.9683 -3.3380 21 6 2.7948 -5.5667 -1.9287 22 6 1.9146 -4.7178 -1.0085 23 1 -0.3633 0.0000 1.0278 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 4.2059 1.8028 -0.0010 27 1 0.1042 -1.0264 3.0668 28 1 1.3416 -2.7410 -2.6802 29 1 2.7195 -1.6977 -2.2555 30 1 4.2909 -3.4929 -2.9162 31 1 3.2106 -3.0724 -4.2677 32 1 3.4365 -5.5444 -3.9869 33 1 1.7614 -4.9969 -3.7330 34 1 3.8167 -5.5747 -1.5497 35 1 2.4102 -6.5861 -1.9614 36 1 1.9362 -5.1333 -0.0010 37 1 0.8902 -4.7213 -1.3809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260277853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:13 Heat of formation + Delta-G solvation = 25.041101 kcal Electronic energy + Delta-G solvation = -19119.934570 eV Core-core repulsion = 16408.955193 eV Total energy + Delta-G solvation = -2710.979377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.62687 -39.51015 -35.92757 -33.73620 -32.27319 -31.59213 -29.60857 -27.34630 -25.72924 -24.94162 -23.68899 -22.64118 -20.46925 -19.45031 -18.96999 -18.00167 -17.10085 -16.42106 -16.11938 -15.55209 -15.28036 -15.07566 -14.72750 -14.29487 -14.10421 -13.95555 -13.78225 -13.37801 -13.25250 -12.96790 -12.86405 -12.60721 -12.55583 -12.09304 -11.92577 -11.83567 -11.65478 -11.47278 -11.15602 -10.96302 -10.64436 -10.27627 -9.66815 -9.10242 -8.94784 -8.05769 -6.23805 0.28424 0.90991 1.31629 1.40260 1.43320 1.50786 2.28520 2.40790 3.14636 3.34644 3.71306 4.02728 4.08103 4.16913 4.40905 4.53953 4.56870 4.69208 4.72410 4.76780 4.83588 4.87603 4.98587 5.09934 5.14849 5.17712 5.23194 5.30110 5.37815 5.41193 5.44938 5.58671 5.68878 5.84224 6.09670 6.37127 6.67774 6.86028 7.17065 7.45229 8.91472 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.010398 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.471367 B = 2692.271048 C = 3793.738625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C 0.031 3.969 3 N -0.494 5.494 4 C -0.028 4.028 5 S 0.115 5.885 6 C -0.134 4.134 7 C 0.288 3.712 8 H -0.010 1.010 9 C -0.518 4.518 10 H 0.062 0.938 11 C 0.027 3.973 12 N -0.885 5.885 13 Si 0.949 3.051 14 H -0.284 1.284 15 H -0.286 1.286 16 H -0.268 1.268 17 N -0.534 5.534 18 C 0.053 3.947 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.109 4.109 22 C 0.064 3.936 23 H 0.084 0.916 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.220 0.780 27 H 0.259 0.741 28 H 0.010 0.990 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 -2.930 -8.470 10.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.098 4.098 3 N -0.209 5.209 4 C -0.325 4.325 5 S 0.367 5.633 6 C -0.255 4.255 7 C 0.179 3.821 8 H 0.008 0.992 9 C -0.556 4.556 10 H 0.080 0.920 11 C -0.175 4.175 12 N -0.522 5.522 13 Si 0.776 3.224 14 H -0.211 1.211 15 H -0.212 1.212 16 H -0.192 1.192 17 N -0.259 5.259 18 C -0.075 4.075 19 C -0.145 4.145 20 C -0.151 4.151 21 C -0.146 4.146 22 C -0.064 4.064 23 H 0.102 0.898 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.237 0.763 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 6.238 -2.777 -8.221 10.687 hybrid contribution -1.983 0.133 1.198 2.320 sum 4.256 -2.644 -7.023 8.627 Atomic orbital electron populations 1.20070 0.87978 0.98917 1.03121 1.20013 0.98242 0.86354 1.05184 1.66076 1.06180 1.32549 1.16113 1.28506 0.95224 1.01169 1.07583 1.83444 1.08693 1.01988 1.69196 1.25964 0.94012 1.00914 1.04650 1.17518 0.89344 0.83963 0.91283 0.99230 1.21163 1.32088 1.10947 0.91422 0.91959 1.25589 0.94774 0.95274 1.01862 1.70116 1.32231 1.19146 1.30716 0.85694 0.77119 0.79083 0.80543 1.21064 1.21205 1.19219 1.61969 1.55925 1.02457 1.05515 1.22104 0.97386 0.98370 0.89672 1.21540 0.99289 0.95589 0.98068 1.21551 1.01311 0.95633 0.96635 1.21575 1.00059 0.98228 0.94787 1.21965 0.95276 0.88928 1.00186 0.89805 0.93322 0.93723 0.76328 0.93206 0.97209 0.92757 0.91430 0.90380 0.89818 0.92592 0.91680 0.90322 0.91622 0.97101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.89 9.13 71.24 0.65 -1.24 16 2 C 0.03 1.47 5.98 41.52 0.25 1.72 16 3 N -0.49 -21.95 10.53 -191.55 -2.02 -23.97 16 4 C -0.03 -1.04 12.23 130.65 1.60 0.56 16 5 S 0.12 4.58 22.52 -56.49 -1.27 3.31 16 6 C -0.13 -6.24 3.04 24.64 0.07 -6.17 16 7 C 0.29 13.87 1.78 43.42 0.08 13.95 16 8 H -0.01 -0.51 6.41 -2.38 -0.02 -0.53 16 9 C -0.52 -26.81 7.85 25.60 0.20 -26.61 16 10 H 0.06 3.25 6.71 -2.91 -0.02 3.23 16 11 C 0.03 1.42 5.30 84.66 0.45 1.87 16 12 N -0.89 -47.50 8.73 21.45 0.19 -47.31 16 13 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 N -0.53 -21.75 4.42 -879.93 -3.89 -25.64 16 18 C 0.05 1.91 5.22 86.33 0.45 2.36 16 19 C -0.11 -2.92 6.09 30.65 0.19 -2.73 16 20 C -0.11 -2.75 6.00 30.67 0.18 -2.57 16 21 C -0.11 -3.02 6.09 30.65 0.19 -2.83 16 22 C 0.06 2.38 5.25 86.33 0.45 2.83 16 23 H 0.08 4.13 6.09 -2.38 -0.01 4.11 16 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.04 2.05 6.61 -2.39 -0.02 2.04 16 26 H 0.22 6.10 8.06 -2.91 -0.02 6.07 16 27 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 2.08 6.22 -2.38 -0.01 2.06 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 35 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.07 2.66 6.30 -2.39 -0.02 2.65 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -58.49 299.00 0.85 -57.63 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.06 Total: 10.22 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 4.76 Total: -18.85 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -5.72 Total: -96.91 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.27 Total: 3.31 kcal Total: -58.49 0.85 -57.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.675 kcal (2) G-P(sol) polarization free energy of solvation -58.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds