Wall clock time and date at job start Mon Mar 30 2020 06:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29035 * 124.91143 * 2 1 4 4 C 1.31779 * 117.12142 * 180.22646 * 3 2 1 5 5 C 1.50705 * 122.74676 * 179.75329 * 4 3 2 6 6 C 1.53000 * 109.47299 * 304.70913 * 5 4 3 7 7 N 1.46897 * 109.47165 * 180.02562 * 6 5 4 8 8 C 1.49005 * 110.97145 * 307.44432 * 7 6 5 9 9 C 1.54937 * 103.00342 * 200.29935 * 8 7 6 10 10 C 1.54599 * 103.08133 * 37.39729 * 9 8 7 11 11 C 1.47896 * 110.99782 * 189.99769 * 7 6 5 12 12 H 1.09008 * 109.92080 * 26.49628 * 11 7 6 13 13 C 1.50702 * 110.08653 * 265.28952 * 11 7 6 14 14 H 1.07996 * 119.99727 * 0.85952 * 13 11 7 15 15 C 1.37874 * 120.00216 * 180.85710 * 13 11 7 16 16 N 1.31510 * 120.00220 * 180.02562 * 15 13 11 17 17 Si 1.86803 * 119.99872 * 0.02562 * 15 13 11 18 18 H 1.48507 * 109.47038 * 89.99975 * 17 15 13 19 19 H 1.48497 * 109.47023 * 209.99504 * 17 15 13 20 20 H 1.48495 * 109.47268 * 329.99955 * 17 15 13 21 21 C 1.33637 * 114.50211 * 359.48503 * 4 3 2 22 22 S 1.70972 * 124.92017 * 179.69642 * 2 1 3 23 23 H 1.09000 * 109.46853 * 180.27863 * 1 2 3 24 24 H 1.08996 * 109.47367 * 300.27596 * 1 2 3 25 25 H 1.09001 * 109.47373 * 60.28333 * 1 2 3 26 26 H 1.08998 * 109.46611 * 184.71047 * 5 4 3 27 27 H 1.08995 * 109.46990 * 64.71598 * 5 4 3 28 28 H 1.09003 * 109.46719 * 59.99704 * 6 5 4 29 29 H 1.09002 * 109.47064 * 300.00520 * 6 5 4 30 30 H 1.09000 * 110.86440 * 81.89429 * 8 7 6 31 31 H 1.09003 * 110.68346 * 318.61724 * 8 7 6 32 32 H 1.09002 * 110.72438 * 278.94787 * 9 8 7 33 33 H 1.08997 * 110.71973 * 155.84129 * 9 8 7 34 34 H 1.08999 * 110.30781 * 96.87090 * 10 9 8 35 35 H 1.09002 * 110.30706 * 219.03844 * 10 9 8 36 36 H 0.96996 * 120.00186 * 180.02562 * 16 15 13 37 37 H 1.08003 * 126.03745 * 180.27130 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 -0.0046 5 6 4.5306 2.0249 -0.0107 6 6 4.2333 2.9439 -1.1972 7 7 5.1884 4.0600 -1.2034 8 6 5.2166 4.7452 0.1195 9 6 5.8195 6.1318 -0.2189 10 6 5.1998 6.4557 -1.5977 11 6 4.7910 5.0922 -2.1853 12 1 3.7123 5.0626 -2.3392 13 6 5.5025 4.8629 -3.4938 14 1 6.1759 4.0257 -3.6029 15 6 5.2938 5.7220 -4.5518 16 7 5.9143 5.5217 -5.6939 17 14 4.1295 7.1706 -4.3629 18 1 4.8849 8.3524 -3.8749 19 1 3.5135 7.4851 -5.6770 20 1 3.0648 6.8260 -3.3868 21 6 3.9355 -0.4004 0.0022 22 16 2.4857 -1.4019 0.0074 23 1 -0.3633 -1.0277 0.0050 24 1 -0.3634 0.5181 0.8874 25 1 -0.3634 0.5094 -0.8925 26 1 5.5447 1.6351 -0.0982 27 1 4.4367 2.5881 0.9177 28 1 3.2191 3.3336 -1.1097 29 1 4.3272 2.3806 -2.1256 30 1 5.8555 4.2087 0.8210 31 1 4.2083 4.8513 0.5196 32 1 6.9057 6.0736 -0.2882 33 1 5.5207 6.8733 0.5220 34 1 4.3244 7.0941 -1.4785 35 1 5.9367 6.9386 -2.2396 36 1 5.7677 6.1263 -6.4381 37 1 4.9547 -0.7578 0.0041 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260305416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:24 Heat of formation + Delta-G solvation = 47.170500 kcal Electronic energy + Delta-G solvation = -17938.137612 eV Core-core repulsion = 15228.117838 eV Total energy + Delta-G solvation = -2710.019775 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.95126 -38.13514 -33.89331 -32.46170 -31.61596 -29.15188 -28.69698 -27.57174 -24.30806 -23.35019 -21.97784 -20.25041 -19.63018 -19.39847 -17.37136 -16.47587 -15.64864 -15.29668 -14.90234 -14.74236 -14.06850 -13.84840 -13.53811 -13.30176 -13.07100 -12.67975 -12.61445 -12.33643 -12.03520 -11.69999 -11.42534 -11.22804 -11.04178 -10.52813 -10.43273 -10.34025 -10.03979 -10.03551 -9.69334 -9.57189 -9.41090 -9.06902 -8.64831 -8.50007 -7.39508 -6.00208 -3.96463 0.70600 1.33861 1.69717 2.81829 3.30837 3.39804 3.41337 4.03477 4.45707 4.75099 4.93955 5.19479 5.24062 5.26293 5.29200 5.33962 5.48307 5.53745 5.67050 5.72735 5.78551 5.92042 5.94411 6.09723 6.21921 6.32598 6.41559 6.49278 6.60911 6.76102 6.80499 6.84606 7.20891 7.72046 7.79129 7.87167 8.04217 8.72248 9.11317 9.62796 11.13180 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.004700 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.950582 B = 5956.400070 C = 6299.985154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.050 3.950 3 N -0.467 5.467 4 C 0.084 3.916 5 C -0.045 4.045 6 C 0.064 3.936 7 N -0.501 5.501 8 C 0.030 3.970 9 C -0.117 4.117 10 C -0.141 4.141 11 C 0.173 3.827 12 H 0.009 0.991 13 C -0.490 4.490 14 H 0.081 0.919 15 C 0.069 3.931 16 N -0.902 5.902 17 Si 0.872 3.128 18 H -0.276 1.276 19 H -0.292 1.292 20 H -0.268 1.268 21 C -0.259 4.259 22 S 0.095 5.905 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.262 0.738 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.987 -10.985 14.196 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.229 4.229 3 N -0.182 5.182 4 C -0.047 4.047 5 C -0.085 4.085 6 C -0.065 4.065 7 N -0.225 5.225 8 C -0.098 4.098 9 C -0.155 4.155 10 C -0.180 4.180 11 C 0.065 3.935 12 H 0.027 0.973 13 C -0.529 4.529 14 H 0.099 0.901 15 C -0.132 4.132 16 N -0.541 5.541 17 Si 0.701 3.299 18 H -0.202 1.202 19 H -0.219 1.219 20 H -0.193 1.193 21 C -0.397 4.397 22 S 0.349 5.651 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.928 -11.715 13.872 19.812 hybrid contribution -0.780 1.818 0.089 1.980 sum -8.708 -9.897 13.961 19.201 Atomic orbital electron populations 1.20416 0.85332 1.03282 1.04519 1.27058 1.01697 0.90821 1.03306 1.66060 1.04787 1.31414 1.15916 1.20384 0.89982 0.94454 0.99926 1.20349 0.95686 0.92483 1.00020 1.22029 0.94108 0.93064 0.97285 1.64892 1.46180 1.08345 1.03092 1.23278 0.98294 0.94920 0.93300 1.22378 1.00765 0.95589 0.96787 1.22943 0.99520 0.99324 0.96198 1.20442 0.94643 0.86356 0.92048 0.97316 1.20931 1.25995 1.13078 0.92884 0.90075 1.24890 0.95549 0.97592 0.95176 1.69885 1.43052 1.38284 1.02895 0.87032 0.82073 0.83801 0.77042 1.20180 1.21891 1.19252 1.26807 1.02883 0.95556 1.14492 1.83819 0.98594 1.13381 1.69348 0.90408 0.89526 0.89308 0.89503 0.90422 0.94767 0.90651 0.91227 0.94949 0.91147 0.92721 0.94078 0.90573 0.92757 0.80534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.47 36.01 0.38 -0.26 16 2 C 0.05 0.61 7.39 -13.45 -0.10 0.51 16 3 N -0.47 -7.20 10.35 -8.05 -0.08 -7.28 16 4 C 0.08 1.26 6.07 -84.22 -0.51 0.74 16 5 C -0.05 -0.70 5.37 -27.88 -0.15 -0.85 16 6 C 0.06 1.25 4.94 -3.83 -0.02 1.23 16 7 N -0.50 -10.72 5.02 -223.53 -1.12 -11.84 16 8 C 0.03 0.54 5.12 -1.63 -0.01 0.53 16 9 C -0.12 -2.14 7.05 -24.87 -0.18 -2.31 16 10 C -0.14 -3.14 4.54 -25.37 -0.12 -3.25 16 11 C 0.17 4.25 1.98 -67.80 -0.13 4.11 16 12 H 0.01 0.24 6.62 -51.92 -0.34 -0.10 16 13 C -0.49 -14.16 9.28 -34.44 -0.32 -14.48 16 14 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 15 C 0.07 2.02 5.33 -17.82 -0.10 1.92 16 16 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 17 Si 0.87 22.06 24.59 -169.99 -4.18 17.88 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 20 H -0.27 -6.59 6.42 56.52 0.36 -6.22 16 21 C -0.26 -3.24 11.07 29.12 0.32 -2.92 16 22 S 0.09 1.02 23.17 -107.50 -2.49 -1.47 16 23 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.25 8.03 -51.93 -0.42 0.84 16 27 H 0.08 1.14 6.79 -51.93 -0.35 0.79 16 28 H 0.03 0.70 7.75 -51.93 -0.40 0.30 16 29 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 30 H 0.07 1.09 7.68 -51.93 -0.40 0.69 16 31 H 0.03 0.56 8.01 -51.93 -0.42 0.15 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.87 7.32 -51.93 -0.38 0.49 16 35 H 0.08 1.81 6.54 -51.93 -0.34 1.48 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.18 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -32.33 308.36 -8.99 -41.32 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.61 Total: -0.98 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -0.93 Total: -15.02 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.43 Total: -46.37 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.18 Total: 17.88 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.33 -8.99 -41.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.489 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds