Wall clock time and date at job start Mon Mar 30 2020 07:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81008 * 1 3 3 C 1.76195 * 100.00097 * 2 1 4 4 N 1.32577 * 119.22347 * 359.97438 * 3 2 1 5 5 C 1.32239 * 120.73426 * 179.97438 * 4 3 2 6 6 C 1.38652 * 119.20219 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.71439 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47193 * 296.54795 * 7 6 5 9 9 H 1.08003 * 119.99909 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99921 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99944 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99912 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47111 * 89.99777 * 12 10 8 14 14 H 1.48495 * 109.47144 * 209.99932 * 12 10 8 15 15 H 1.48504 * 109.47157 * 330.00107 * 12 10 8 16 16 C 1.38596 * 118.56947 * 359.97438 * 6 5 4 17 17 C 1.50693 * 120.39926 * 179.97438 * 16 6 5 18 18 C 1.53003 * 109.47003 * 60.43885 * 17 16 6 19 19 C 1.53003 * 109.47553 * 180.43729 * 17 16 6 20 20 C 1.53005 * 109.47519 * 300.44244 * 17 16 6 21 21 N 1.32279 * 119.20182 * 359.74967 * 16 6 5 22 22 H 1.09002 * 109.46990 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46837 * 300.00352 * 1 2 3 24 24 H 1.08998 * 109.46990 * 59.99988 * 1 2 3 25 25 H 1.07997 * 120.39899 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.47205 * 56.54159 * 7 6 5 27 27 H 1.08996 * 109.47309 * 176.54441 * 7 6 5 28 28 H 0.97001 * 119.99726 * 180.02562 * 11 10 8 29 29 H 1.09008 * 109.47231 * 70.37167 * 18 17 16 30 30 H 1.09002 * 109.47681 * 190.37101 * 18 17 16 31 31 H 1.08999 * 109.47242 * 310.37535 * 18 17 16 32 32 H 1.09000 * 109.46419 * 59.99969 * 19 17 16 33 33 H 1.08994 * 109.47281 * 180.02562 * 19 17 16 34 34 H 1.08997 * 109.46837 * 300.00699 * 19 17 16 35 35 H 1.08999 * 109.47071 * 68.91616 * 20 17 16 36 36 H 1.09000 * 109.47145 * 188.91497 * 20 17 16 37 37 H 1.08999 * 109.46689 * 308.91749 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 7 1.0890 2.5735 -0.0005 5 6 1.2843 3.8814 0.0000 6 6 2.5812 4.3718 0.0005 7 6 2.8429 5.8559 0.0005 8 6 2.3054 6.4608 -1.2708 9 1 1.8228 5.8333 -2.0055 10 6 2.4305 7.8152 -1.4965 11 7 3.0185 8.5793 -0.6021 12 14 1.7648 8.5649 -3.0726 13 1 0.3546 8.9816 -2.8654 14 1 2.5818 9.7489 -3.4411 15 1 1.8287 7.5601 -4.1642 16 6 3.6316 3.4677 0.0010 17 6 5.0575 3.9554 0.0010 18 6 5.3095 4.7943 1.2555 19 6 6.0069 2.7556 -0.0093 20 6 5.3038 4.8115 -1.2429 21 7 3.3675 2.1715 0.0061 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.4437 4.5595 0.0000 26 1 2.3477 6.3122 0.8576 27 1 3.9162 6.0356 0.0629 28 1 3.1062 9.5322 -0.7607 29 1 5.3154 4.1455 2.1314 30 1 6.2729 5.2968 1.1691 31 1 4.5197 5.5382 1.3598 32 1 5.8273 2.1580 -0.9030 33 1 7.0382 3.1084 -0.0089 34 1 5.8314 2.1458 0.8769 35 1 4.7447 5.7434 -1.1591 36 1 6.3678 5.0324 -1.3271 37 1 4.9743 4.2684 -2.1287 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260407024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:52 Heat of formation + Delta-G solvation = 33.897192 kcal Electronic energy + Delta-G solvation = -18547.375482 eV Core-core repulsion = 15836.780134 eV Total energy + Delta-G solvation = -2710.595349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66489 -36.89716 -33.99530 -32.50890 -31.56730 -28.91196 -27.94765 -26.80646 -26.55382 -24.10334 -23.93707 -21.48255 -19.66648 -17.46063 -17.01021 -16.29597 -15.11450 -14.71188 -14.69420 -14.09614 -13.78915 -13.59333 -13.38184 -13.19828 -13.08635 -12.56665 -12.44644 -11.81668 -11.68287 -11.58361 -11.22857 -11.05830 -10.93829 -10.77473 -10.68322 -10.62469 -10.35185 -10.06693 -9.93881 -9.68023 -9.38062 -8.94855 -8.69932 -8.39919 -7.35293 -6.18641 -4.23075 1.45663 1.56751 1.65245 2.36426 3.21910 3.29579 3.33105 4.19785 4.35607 4.52641 4.97709 5.14199 5.17976 5.24996 5.29974 5.45211 5.53388 5.58690 5.85198 5.90446 6.02358 6.08401 6.13958 6.21495 6.28060 6.35952 6.48379 6.57804 6.63857 6.80222 6.97007 7.03829 7.37507 7.51472 7.53859 7.76727 8.13612 8.43468 8.80394 9.41611 10.90423 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.006684 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.443193 B = 4188.019484 C = 5182.943865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.032 6.032 3 C 0.263 3.737 4 N -0.529 5.529 5 C 0.149 3.851 6 C -0.129 4.129 7 C 0.036 3.964 8 C -0.516 4.516 9 H 0.055 0.945 10 C 0.064 3.936 11 N -0.889 5.889 12 Si 0.892 3.108 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.180 3.820 17 C -0.010 4.010 18 C -0.155 4.155 19 C -0.124 4.124 20 C -0.157 4.157 21 N -0.496 5.496 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.169 0.831 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.264 0.736 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -10.821 2.218 11.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.199 5.801 3 C -0.114 4.114 4 N -0.247 5.247 5 C -0.018 4.018 6 C -0.136 4.136 7 C -0.002 4.002 8 C -0.555 4.555 9 H 0.073 0.927 10 C -0.138 4.138 11 N -0.527 5.527 12 Si 0.720 3.280 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.031 3.969 17 C -0.011 4.011 18 C -0.212 4.212 19 C -0.181 4.181 20 C -0.214 4.214 21 N -0.211 5.211 22 H 0.117 0.883 23 H 0.105 0.895 24 H 0.106 0.894 25 H 0.186 0.814 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.033 -12.641 2.260 12.883 hybrid contribution -1.212 2.480 -0.936 2.915 sum -0.179 -10.161 1.324 10.249 Atomic orbital electron populations 1.23430 0.94603 1.05481 1.07016 1.85407 1.06436 0.95720 1.92524 1.24397 0.87600 0.99496 0.99870 1.68588 1.34527 1.04886 1.16670 1.23088 0.97324 0.90098 0.91285 1.22218 0.93585 1.01543 0.96245 1.18860 1.00420 0.82858 0.98019 1.21002 1.38675 0.92659 1.03127 0.92653 1.24939 0.95073 0.97080 0.96711 1.69924 1.42636 1.05639 1.34477 0.86581 0.79023 0.78897 0.83542 1.20529 1.21030 1.19851 1.21550 0.96433 0.87501 0.91416 1.19410 0.88310 0.95840 0.97535 1.22243 1.03483 1.00159 0.95364 1.21676 0.97303 0.96787 1.02363 1.22282 1.01733 1.02288 0.95086 1.68144 1.20797 1.17011 1.15182 0.88321 0.89457 0.89410 0.81384 0.94700 0.91452 0.92619 0.93340 0.91875 0.89463 0.92560 0.93103 0.92640 0.87424 0.92800 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.62 101.05 0.97 -0.63 16 2 S -0.03 -0.49 22.89 -107.50 -2.46 -2.95 16 3 C 0.26 4.99 7.85 -90.84 -0.71 4.28 16 4 N -0.53 -10.16 9.14 -13.44 -0.12 -10.28 16 5 C 0.15 2.98 10.70 -17.22 -0.18 2.80 16 6 C -0.13 -2.71 5.02 -104.34 -0.52 -3.24 16 7 C 0.04 0.82 3.24 -29.03 -0.09 0.72 16 8 C -0.52 -13.09 8.19 -34.44 -0.28 -13.37 16 9 H 0.06 1.43 7.70 -52.48 -0.40 1.02 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -23.99 13.29 55.43 0.74 -23.25 16 12 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.18 3.58 5.58 -82.27 -0.46 3.12 16 17 C -0.01 -0.17 0.75 -155.66 -0.12 -0.29 16 18 C -0.16 -2.57 8.09 37.16 0.30 -2.27 16 19 C -0.12 -1.93 7.68 37.16 0.29 -1.64 16 20 C -0.16 -2.86 8.09 37.16 0.30 -2.56 16 21 N -0.50 -9.81 9.14 -9.68 -0.09 -9.90 16 22 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 23 H 0.09 1.06 8.11 -51.92 -0.42 0.63 16 24 H 0.09 1.09 8.11 -51.92 -0.42 0.67 16 25 H 0.17 3.14 8.06 -52.49 -0.42 2.72 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.54 2.69 -51.93 -0.14 1.40 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.05 0.74 8.11 -51.92 -0.42 0.32 16 30 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 31 H 0.09 1.62 4.81 -51.93 -0.25 1.37 16 32 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.86 8.07 -51.93 -0.42 0.45 16 35 H 0.11 2.28 4.40 -51.93 -0.23 2.06 16 36 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 37 H 0.05 0.91 8.12 -51.93 -0.42 0.48 16 LS Contribution 310.78 15.07 4.68 4.68 Total: -1.00 -27.45 310.78 -8.10 -35.55 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.21 Total: 2.32 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.61 Total: -11.49 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.53 Total: -43.43 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.46 Total: -2.95 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.45 -8.10 -35.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.450 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds