Wall clock time and date at job start Mon Mar 30 2020 07:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81008 * 1 3 3 C 1.76195 * 100.00097 * 2 1 4 4 N 1.32577 * 119.22347 * 359.97438 * 3 2 1 5 5 C 1.32239 * 120.73426 * 179.97438 * 4 3 2 6 6 C 1.38652 * 119.20219 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.71439 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47193 * 296.54795 * 7 6 5 9 9 H 1.08003 * 119.99909 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99921 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99944 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99912 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47111 * 89.99777 * 12 10 8 14 14 H 1.48495 * 109.47144 * 209.99932 * 12 10 8 15 15 H 1.48504 * 109.47157 * 330.00107 * 12 10 8 16 16 C 1.38596 * 118.56947 * 359.97438 * 6 5 4 17 17 C 1.50693 * 120.39926 * 179.97438 * 16 6 5 18 18 C 1.53003 * 109.47003 * 60.43885 * 17 16 6 19 19 C 1.53003 * 109.47553 * 180.43729 * 17 16 6 20 20 C 1.53005 * 109.47519 * 300.44244 * 17 16 6 21 21 N 1.32279 * 119.20182 * 359.74967 * 16 6 5 22 22 H 1.09002 * 109.46990 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46837 * 300.00352 * 1 2 3 24 24 H 1.08998 * 109.46990 * 59.99988 * 1 2 3 25 25 H 1.07997 * 120.39899 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.47205 * 56.54159 * 7 6 5 27 27 H 1.08996 * 109.47309 * 176.54441 * 7 6 5 28 28 H 0.97001 * 119.99726 * 180.02562 * 11 10 8 29 29 H 1.09008 * 109.47231 * 70.37167 * 18 17 16 30 30 H 1.09002 * 109.47681 * 190.37101 * 18 17 16 31 31 H 1.08999 * 109.47242 * 310.37535 * 18 17 16 32 32 H 1.09000 * 109.46419 * 59.99969 * 19 17 16 33 33 H 1.08994 * 109.47281 * 180.02562 * 19 17 16 34 34 H 1.08997 * 109.46837 * 300.00699 * 19 17 16 35 35 H 1.08999 * 109.47071 * 68.91616 * 20 17 16 36 36 H 1.09000 * 109.47145 * 188.91497 * 20 17 16 37 37 H 1.08999 * 109.46689 * 308.91749 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 7 1.0890 2.5735 -0.0005 5 6 1.2843 3.8814 0.0000 6 6 2.5812 4.3718 0.0005 7 6 2.8429 5.8559 0.0005 8 6 2.3054 6.4608 -1.2708 9 1 1.8228 5.8333 -2.0055 10 6 2.4305 7.8152 -1.4965 11 7 3.0185 8.5793 -0.6021 12 14 1.7648 8.5649 -3.0726 13 1 0.3546 8.9816 -2.8654 14 1 2.5818 9.7489 -3.4411 15 1 1.8287 7.5601 -4.1642 16 6 3.6316 3.4677 0.0010 17 6 5.0575 3.9554 0.0010 18 6 5.3095 4.7943 1.2555 19 6 6.0069 2.7556 -0.0093 20 6 5.3038 4.8115 -1.2429 21 7 3.3675 2.1715 0.0061 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.4437 4.5595 0.0000 26 1 2.3477 6.3122 0.8576 27 1 3.9162 6.0356 0.0629 28 1 3.1062 9.5322 -0.7607 29 1 5.3154 4.1455 2.1314 30 1 6.2729 5.2968 1.1691 31 1 4.5197 5.5382 1.3598 32 1 5.8273 2.1580 -0.9030 33 1 7.0382 3.1084 -0.0089 34 1 5.8314 2.1458 0.8769 35 1 4.7447 5.7434 -1.1591 36 1 6.3678 5.0324 -1.3271 37 1 4.9743 4.2684 -2.1287 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260407024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:52 Heat of formation + Delta-G solvation = 20.091712 kcal Electronic energy + Delta-G solvation = -18547.974133 eV Core-core repulsion = 15836.780134 eV Total energy + Delta-G solvation = -2711.193999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.17666 -38.34034 -35.76098 -34.15427 -33.21738 -30.08228 -29.43173 -28.20604 -28.00545 -25.83338 -25.44093 -23.19387 -21.08410 -18.95379 -18.59200 -18.08599 -16.75993 -16.25116 -16.18406 -15.43653 -15.28934 -14.92805 -14.89449 -14.61130 -14.49970 -14.09321 -13.56673 -13.39213 -13.09908 -12.99310 -12.91071 -12.67483 -12.49874 -12.35550 -12.14857 -12.02292 -11.75342 -11.72553 -11.46762 -11.29956 -11.07586 -10.62411 -10.43587 -10.07443 -8.67599 -8.16677 -6.27091 -0.09353 0.09841 0.27859 1.24947 1.40016 1.42871 1.51292 2.40159 2.69990 3.06074 3.15971 3.51862 3.72267 4.05559 4.09939 4.15343 4.33986 4.34219 4.39549 4.44359 4.73672 4.80297 4.83121 4.92876 4.96085 5.01715 5.07896 5.19257 5.25928 5.33484 5.42990 5.50538 5.58115 5.68945 5.83681 6.00432 6.20315 6.81626 6.90627 7.39817 8.91121 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.006684 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.443193 B = 4188.019484 C = 5182.943865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.014 6.014 3 C 0.248 3.752 4 N -0.530 5.530 5 C 0.144 3.856 6 C -0.154 4.154 7 C 0.049 3.951 8 C -0.521 4.521 9 H 0.045 0.955 10 C 0.022 3.978 11 N -0.917 5.917 12 Si 0.947 3.053 13 H -0.275 1.275 14 H -0.280 1.280 15 H -0.274 1.274 16 C 0.179 3.821 17 C -0.012 4.012 18 C -0.150 4.150 19 C -0.114 4.114 20 C -0.149 4.149 21 N -0.505 5.505 22 H 0.136 0.864 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.173 0.827 26 H 0.009 0.991 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -12.345 1.892 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.217 5.783 3 C -0.127 4.127 4 N -0.247 5.247 5 C -0.023 4.023 6 C -0.161 4.161 7 C 0.012 3.988 8 C -0.560 4.560 9 H 0.063 0.937 10 C -0.178 4.178 11 N -0.556 5.556 12 Si 0.773 3.227 13 H -0.201 1.201 14 H -0.206 1.206 15 H -0.199 1.199 16 C 0.030 3.970 17 C -0.014 4.014 18 C -0.207 4.207 19 C -0.172 4.172 20 C -0.206 4.206 21 N -0.221 5.221 22 H 0.154 0.846 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.191 0.809 26 H 0.027 0.973 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.258 -14.178 1.934 14.365 hybrid contribution -1.340 2.808 -0.816 3.217 sum -0.083 -11.370 1.118 11.425 Atomic orbital electron populations 1.23568 0.91945 1.07799 1.06668 1.85369 1.09292 0.92106 1.91517 1.25326 0.87454 1.01666 0.98249 1.68677 1.34496 1.04358 1.17203 1.23219 0.97289 0.90850 0.90934 1.22055 0.94563 1.00574 0.98882 1.18618 1.00095 0.84144 0.95943 1.21201 1.38176 0.92829 1.03756 0.93672 1.25585 0.95422 0.97535 0.99254 1.70013 1.43793 1.05839 1.35962 0.85712 0.78549 0.78079 0.80316 1.20099 1.20570 1.19888 1.21922 0.97322 0.87588 0.90193 1.19532 0.87609 0.96712 0.97506 1.22169 1.03514 0.99645 0.95363 1.21599 0.98067 0.95590 1.01921 1.22165 1.02831 1.00584 0.95059 1.68290 1.21194 1.16661 1.15978 0.84567 0.89614 0.89886 0.80945 0.97287 0.91173 0.92544 0.92233 0.89912 0.92019 0.93317 0.90519 0.92702 0.90631 0.90173 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.62 113.37 1.09 -1.63 16 2 S -0.01 -0.40 22.89 -56.49 -1.29 -1.69 16 3 C 0.25 9.21 7.85 180.42 1.42 10.63 16 4 N -0.53 -20.11 9.14 -196.43 -1.80 -21.91 16 5 C 0.14 5.85 10.70 84.73 0.91 6.76 16 6 C -0.15 -6.59 5.02 -19.68 -0.10 -6.69 16 7 C 0.05 2.34 3.24 29.10 0.09 2.44 16 8 C -0.52 -27.09 8.19 25.60 0.21 -26.88 16 9 H 0.04 2.39 7.70 -2.91 -0.02 2.36 16 10 C 0.02 1.14 5.46 84.66 0.46 1.61 16 11 N -0.92 -50.35 13.29 21.45 0.28 -50.07 16 12 Si 0.95 42.00 29.54 68.60 2.03 44.03 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 16 C 0.18 7.10 5.58 42.57 0.24 7.33 16 17 C -0.01 -0.43 0.75 -52.93 -0.04 -0.47 16 18 C -0.15 -4.83 8.09 71.98 0.58 -4.25 16 19 C -0.11 -3.32 7.68 71.98 0.55 -2.77 16 20 C -0.15 -5.36 8.09 71.98 0.58 -4.78 16 21 N -0.51 -19.65 9.14 -184.53 -1.69 -21.33 16 22 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.08 1.87 8.11 -2.40 -0.02 1.85 16 24 H 0.08 1.87 8.11 -2.40 -0.02 1.85 16 25 H 0.17 6.64 8.06 -2.91 -0.02 6.61 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.07 3.32 2.69 -2.39 -0.01 3.31 16 28 H 0.27 13.87 8.31 -92.71 -0.77 13.09 16 29 H 0.06 1.76 8.11 -2.38 -0.02 1.74 16 30 H 0.08 2.31 8.11 -2.39 -0.02 2.29 16 31 H 0.06 2.32 4.81 -2.39 -0.01 2.31 16 32 H 0.05 1.48 8.08 -2.39 -0.02 1.46 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.59 8.07 -2.39 -0.02 1.57 16 35 H 0.08 3.25 4.40 -2.39 -0.01 3.24 16 36 H 0.08 2.40 8.12 -2.39 -0.02 2.38 16 37 H 0.04 1.41 8.12 -2.39 -0.02 1.39 16 Total: -1.00 -58.77 310.78 4.59 -54.18 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.06 Total: 15.50 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 6.00 Total: -18.71 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -3.20 Total: -93.30 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -1.29 Total: -1.69 kcal Total: -58.77 4.59 -54.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.270 kcal (2) G-P(sol) polarization free energy of solvation -58.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds