Wall clock time and date at job start Mon Mar 30 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47388 * 2 1 4 4 C 1.50700 * 109.46886 * 120.00070 * 2 1 3 5 5 C 1.38234 * 120.00938 * 300.01935 * 4 2 1 6 6 C 1.38214 * 120.01448 * 179.97438 * 5 4 2 7 7 C 1.38270 * 120.02814 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99318 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47148 * 355.67844 * 8 7 6 10 10 C 1.53002 * 109.46955 * 115.67896 * 8 7 6 11 11 C 1.50701 * 109.46988 * 235.68180 * 8 7 6 12 12 H 1.07995 * 120.00060 * 0.10296 * 11 8 7 13 13 C 1.37879 * 119.99886 * 180.11263 * 11 8 7 14 14 N 1.31510 * 120.00073 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 119.99765 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47183 * 89.99697 * 15 13 11 17 17 H 1.48498 * 109.46944 * 209.99505 * 15 13 11 18 18 H 1.48498 * 109.47334 * 329.99409 * 15 13 11 19 19 C 1.38189 * 120.01073 * 359.77005 * 7 6 5 20 20 C 1.38338 * 120.00630 * 120.00429 * 4 2 1 21 21 Cl 1.73600 * 120.00979 * 0.02562 * 20 4 2 22 22 H 1.09004 * 109.47026 * 60.00372 * 1 2 3 23 23 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47493 * 299.99911 * 1 2 3 25 25 H 1.08999 * 109.47493 * 240.00089 * 2 1 3 26 26 H 1.08998 * 109.47598 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46985 * 300.00235 * 3 2 1 28 28 H 1.09009 * 109.46717 * 59.99680 * 3 2 1 29 29 H 1.07997 * 119.98845 * 0.02562 * 5 4 2 30 30 H 1.07998 * 119.98633 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.46913 * 60.00041 * 9 8 7 32 32 H 1.08994 * 109.46798 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.46912 * 300.00179 * 9 8 7 34 34 H 1.09004 * 109.46772 * 59.99995 * 10 8 7 35 35 H 1.09007 * 109.46768 * 179.97438 * 10 8 7 36 36 H 1.08993 * 109.46969 * 300.00076 * 10 8 7 37 37 H 0.97003 * 120.00027 * 180.02562 * 14 13 11 38 38 H 1.08001 * 120.00603 * 180.25252 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6981 -0.2386 2.4861 6 6 2.1582 -0.8904 3.6147 7 6 2.9527 -2.0150 3.4886 8 6 3.4535 -2.7254 4.7197 9 6 3.0335 -1.9436 5.9660 10 6 2.8558 -4.1328 4.7749 11 6 4.9567 -2.8196 4.6687 12 1 5.4956 -2.4049 3.8297 13 6 5.6440 -3.4354 5.6932 14 7 4.9878 -3.9401 6.7150 15 14 7.5072 -3.5527 5.6296 16 1 8.1009 -2.3582 6.2822 17 1 7.9506 -4.7778 6.3421 18 1 7.9512 -3.6154 4.2139 19 6 3.2831 -2.4908 2.2340 20 6 2.8277 -1.8352 1.1037 21 17 3.2480 -2.4282 -0.4728 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.0766 0.6391 2.5851 30 1 1.8965 -0.5216 4.5954 31 1 1.9462 -1.8755 6.0029 32 1 3.3953 -2.4577 6.8564 33 1 3.4592 -0.9410 5.9266 34 1 3.1551 -4.6897 3.8870 35 1 3.2184 -4.6468 5.6652 36 1 1.7686 -4.0646 4.8118 37 1 5.4713 -4.3730 7.4359 38 1 3.9002 -3.3716 2.1356 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260417664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:14 Heat of formation + Delta-G solvation = -9.101051 kcal Electronic energy + Delta-G solvation = -18352.214188 eV Core-core repulsion = 15605.417838 eV Total energy + Delta-G solvation = -2746.796350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.113 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.40500 -36.57030 -35.88484 -34.06316 -31.32763 -30.25310 -28.11652 -27.06515 -25.86612 -25.19925 -23.10961 -21.85606 -20.03182 -18.93761 -16.55807 -15.78107 -15.29334 -14.74298 -14.46152 -13.71486 -13.63514 -13.59587 -13.23251 -12.86245 -12.42748 -12.20402 -12.12822 -11.77884 -11.34424 -11.26555 -11.17436 -11.08225 -10.86058 -10.81054 -10.67406 -10.53637 -10.40854 -10.15752 -10.14508 -9.63879 -9.36141 -8.91335 -8.38118 -8.19346 -7.76504 -6.01715 -4.11873 1.80184 1.94641 2.59872 3.27948 3.35158 3.39222 4.25853 4.42875 4.86954 4.97522 5.24756 5.30924 5.44618 5.59193 5.66598 5.76055 5.80290 5.87816 6.00242 6.04019 6.12902 6.29696 6.32109 6.38748 6.53587 6.67106 6.78484 6.83386 6.93292 6.96393 7.04652 7.24561 7.34339 7.50912 7.59813 7.72329 8.01325 8.13991 8.38800 8.88089 9.53603 10.99276 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.005863 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.675544 B = 4774.665990 C = 5227.755651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.098 4.098 5 C -0.109 4.109 6 C -0.127 4.127 7 C -0.018 4.018 8 C 0.095 3.905 9 C -0.133 4.133 10 C -0.127 4.127 11 C -0.501 4.501 12 H 0.057 0.943 13 C 0.066 3.934 14 N -0.885 5.885 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.099 4.099 20 C -0.034 4.034 21 Cl -0.092 7.092 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.012 0.988 32 H 0.086 0.914 33 H 0.029 0.971 34 H 0.028 0.972 35 H 0.088 0.912 36 H 0.010 0.990 37 H 0.260 0.740 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.128 6.307 -9.684 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.099 4.099 5 C -0.128 4.128 6 C -0.145 4.145 7 C -0.018 4.018 8 C 0.095 3.905 9 C -0.190 4.190 10 C -0.184 4.184 11 C -0.539 4.539 12 H 0.075 0.925 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.118 4.118 20 C -0.060 4.060 21 Cl -0.063 7.063 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.031 0.969 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.051 6.150 -9.655 13.444 hybrid contribution 1.150 -0.126 -0.119 1.163 sum -5.901 6.024 -9.774 12.909 Atomic orbital electron populations 1.21822 0.94659 1.01842 1.01410 1.20145 0.95707 0.95945 0.96046 1.21824 1.01312 0.95246 1.01394 1.19407 0.99737 0.95576 0.95197 1.20782 1.00740 0.99891 0.91345 1.21377 0.98366 0.96235 0.98518 1.20622 0.91903 0.93445 0.95817 1.17284 0.95005 0.91305 0.86950 1.21898 0.95820 0.98999 1.02331 1.21812 0.95607 0.98416 1.02607 1.21061 0.89860 1.37001 1.06016 0.92474 1.24893 0.98182 0.95105 0.95314 1.69804 1.34911 1.38314 1.09374 0.86601 0.85789 0.77490 0.78218 1.20720 1.21219 1.19901 1.20986 0.99964 1.00526 0.90336 1.20813 1.02442 0.97458 0.85327 1.98298 1.92596 1.87949 1.27460 0.92821 0.92645 0.92580 0.89960 0.92585 0.92824 0.92579 0.86408 0.85511 0.96866 0.89493 0.95205 0.95312 0.89333 0.97132 0.92959 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.01 37.16 0.33 -1.24 16 2 C -0.06 -0.78 2.99 -91.77 -0.27 -1.05 16 3 C -0.14 -1.61 9.01 37.16 0.33 -1.28 16 4 C -0.10 -1.57 4.78 -104.59 -0.50 -2.07 16 5 C -0.11 -1.75 8.71 -39.59 -0.34 -2.09 16 6 C -0.13 -2.35 8.98 -39.58 -0.36 -2.70 16 7 C -0.02 -0.37 4.72 -104.63 -0.49 -0.86 16 8 C 0.09 2.22 0.58 -156.81 -0.09 2.13 16 9 C -0.13 -3.03 6.92 37.16 0.26 -2.77 16 10 C -0.13 -2.95 8.10 37.16 0.30 -2.65 16 11 C -0.50 -13.04 7.59 -34.44 -0.26 -13.30 16 12 H 0.06 1.52 7.48 -52.49 -0.39 1.12 16 13 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 14 N -0.89 -23.57 9.35 55.43 0.52 -23.05 16 15 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.10 -2.00 8.40 -39.55 -0.33 -2.33 16 20 C -0.03 -0.60 6.31 -39.50 -0.25 -0.85 16 21 Cl -0.09 -1.45 27.01 -51.86 -1.40 -2.85 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.60 7.39 -51.93 -0.38 0.22 16 25 H 0.08 1.09 6.17 -51.93 -0.32 0.77 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.62 7.39 -51.92 -0.38 0.23 16 29 H 0.12 1.57 7.10 -52.49 -0.37 1.20 16 30 H 0.13 2.23 5.90 -52.49 -0.31 1.92 16 31 H 0.01 0.26 7.31 -51.93 -0.38 -0.12 16 32 H 0.09 2.18 6.08 -51.93 -0.32 1.87 16 33 H 0.03 0.65 7.72 -51.93 -0.40 0.25 16 34 H 0.03 0.64 7.64 -51.93 -0.40 0.25 16 35 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 36 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.13 2.75 7.72 -52.49 -0.41 2.34 16 LS Contribution 311.45 15.07 4.69 4.69 Total: -1.00 -25.90 311.45 -8.60 -34.50 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.62 Total: 0.42 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -1.77 Total: -29.43 kcal Atomic # 7 Polarization: -23.57 SS G_CDS: 0.52 Total: -23.05 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -1.40 Total: -2.85 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -25.90 -8.60 -34.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260417664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.399 kcal (2) G-P(sol) polarization free energy of solvation -25.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds