Wall clock time and date at job start Mon Mar 30 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47388 * 2 1 4 4 C 1.50700 * 109.46886 * 120.00070 * 2 1 3 5 5 C 1.38234 * 120.00938 * 300.01935 * 4 2 1 6 6 C 1.38214 * 120.01448 * 179.97438 * 5 4 2 7 7 C 1.38270 * 120.02814 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99318 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47148 * 355.67844 * 8 7 6 10 10 C 1.53002 * 109.46955 * 115.67896 * 8 7 6 11 11 C 1.50701 * 109.46988 * 235.68180 * 8 7 6 12 12 H 1.07995 * 120.00060 * 0.10296 * 11 8 7 13 13 C 1.37879 * 119.99886 * 180.11263 * 11 8 7 14 14 N 1.31510 * 120.00073 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 119.99765 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47183 * 89.99697 * 15 13 11 17 17 H 1.48498 * 109.46944 * 209.99505 * 15 13 11 18 18 H 1.48498 * 109.47334 * 329.99409 * 15 13 11 19 19 C 1.38189 * 120.01073 * 359.77005 * 7 6 5 20 20 C 1.38338 * 120.00630 * 120.00429 * 4 2 1 21 21 Cl 1.73600 * 120.00979 * 0.02562 * 20 4 2 22 22 H 1.09004 * 109.47026 * 60.00372 * 1 2 3 23 23 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47493 * 299.99911 * 1 2 3 25 25 H 1.08999 * 109.47493 * 240.00089 * 2 1 3 26 26 H 1.08998 * 109.47598 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46985 * 300.00235 * 3 2 1 28 28 H 1.09009 * 109.46717 * 59.99680 * 3 2 1 29 29 H 1.07997 * 119.98845 * 0.02562 * 5 4 2 30 30 H 1.07998 * 119.98633 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.46913 * 60.00041 * 9 8 7 32 32 H 1.08994 * 109.46798 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.46912 * 300.00179 * 9 8 7 34 34 H 1.09004 * 109.46772 * 59.99995 * 10 8 7 35 35 H 1.09007 * 109.46768 * 179.97438 * 10 8 7 36 36 H 1.08993 * 109.46969 * 300.00076 * 10 8 7 37 37 H 0.97003 * 120.00027 * 180.02562 * 14 13 11 38 38 H 1.08001 * 120.00603 * 180.25252 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6981 -0.2386 2.4861 6 6 2.1582 -0.8904 3.6147 7 6 2.9527 -2.0150 3.4886 8 6 3.4535 -2.7254 4.7197 9 6 3.0335 -1.9436 5.9660 10 6 2.8558 -4.1328 4.7749 11 6 4.9567 -2.8196 4.6687 12 1 5.4956 -2.4049 3.8297 13 6 5.6440 -3.4354 5.6932 14 7 4.9878 -3.9401 6.7150 15 14 7.5072 -3.5527 5.6296 16 1 8.1009 -2.3582 6.2822 17 1 7.9506 -4.7778 6.3421 18 1 7.9512 -3.6154 4.2139 19 6 3.2831 -2.4908 2.2340 20 6 2.8277 -1.8352 1.1037 21 17 3.2480 -2.4282 -0.4728 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.0766 0.6391 2.5851 30 1 1.8965 -0.5216 4.5954 31 1 1.9462 -1.8755 6.0029 32 1 3.3953 -2.4577 6.8564 33 1 3.4592 -0.9410 5.9266 34 1 3.1551 -4.6897 3.8870 35 1 3.2184 -4.6468 5.6652 36 1 1.7686 -4.0646 4.8118 37 1 5.4713 -4.3730 7.4359 38 1 3.9002 -3.3716 2.1356 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260417664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:14 Heat of formation + Delta-G solvation = -18.921659 kcal Electronic energy + Delta-G solvation = -18352.640041 eV Core-core repulsion = 15605.417838 eV Total energy + Delta-G solvation = -2747.222203 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.113 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80481 -38.06444 -37.18588 -35.52090 -33.15093 -31.67017 -29.54792 -27.91834 -27.67556 -27.19567 -24.45662 -23.31707 -21.35119 -20.50814 -18.23228 -17.45195 -16.69894 -16.37634 -15.92535 -15.17881 -14.89092 -14.82347 -14.62509 -14.39928 -13.70902 -13.62631 -13.42880 -13.17854 -12.97435 -12.92171 -12.65959 -12.55379 -12.40876 -12.28797 -12.16182 -11.99687 -11.88425 -11.84264 -11.50595 -11.27516 -10.98903 -10.78606 -10.36740 -9.59870 -9.21468 -8.00734 -6.16250 0.38986 0.54606 1.24692 1.40501 1.43636 1.51642 2.44424 2.87325 3.22545 3.75379 3.89507 4.23134 4.29832 4.37468 4.50771 4.57822 4.63662 4.78180 4.87620 4.87936 4.95805 4.99061 5.04455 5.04970 5.14244 5.16832 5.32742 5.34835 5.38431 5.45419 5.52267 5.59485 5.65453 5.69239 5.83454 6.05349 6.16204 6.28518 6.45591 6.87812 7.50755 8.97762 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.005863 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.675544 B = 4774.665990 C = 5227.755651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.089 4.089 5 C -0.099 4.099 6 C -0.132 4.132 7 C -0.045 4.045 8 C 0.088 3.912 9 C -0.122 4.122 10 C -0.117 4.117 11 C -0.513 4.513 12 H 0.042 0.958 13 C 0.027 3.973 14 N -0.902 5.902 15 Si 0.941 3.059 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.277 1.277 19 C -0.116 4.116 20 C -0.043 4.043 21 Cl -0.077 7.077 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.153 0.847 30 H 0.134 0.866 31 H 0.034 0.966 32 H 0.060 0.940 33 H 0.028 0.972 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.309 8.130 -11.024 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 C -0.196 4.196 4 C -0.090 4.090 5 C -0.117 4.117 6 C -0.150 4.150 7 C -0.045 4.045 8 C 0.088 3.912 9 C -0.180 4.180 10 C -0.175 4.175 11 C -0.551 4.551 12 H 0.061 0.939 13 C -0.173 4.173 14 N -0.541 5.541 15 Si 0.768 3.232 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.202 1.202 19 C -0.135 4.135 20 C -0.070 4.070 21 Cl -0.048 7.048 22 H 0.093 0.907 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.171 0.829 30 H 0.152 0.848 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.233 7.972 -10.999 15.884 hybrid contribution 1.481 -0.673 0.197 1.639 sum -6.752 7.299 -10.802 14.681 Atomic orbital electron populations 1.21813 0.92914 1.01788 1.02961 1.20240 0.97074 0.96487 0.94115 1.21821 1.00553 0.94247 1.02962 1.19853 0.97946 0.94473 0.96717 1.21107 1.00014 1.00262 0.90343 1.21489 0.98044 0.95559 0.99898 1.20411 0.94137 0.95026 0.94929 1.17243 0.93686 0.91621 0.88655 1.21738 0.97053 0.98349 1.00830 1.21670 0.96371 0.98467 1.01004 1.21267 0.91659 1.36783 1.05414 0.93948 1.25469 1.01370 0.95160 0.95265 1.69917 1.35837 1.38682 1.09628 0.85819 0.82064 0.77467 0.77851 1.20428 1.20874 1.20172 1.20840 1.00809 1.00588 0.91256 1.20908 1.02658 0.97962 0.85428 1.98296 1.92544 1.87916 1.26073 0.90654 0.93530 0.91734 0.90331 0.93823 0.90587 0.91771 0.82906 0.84791 0.94714 0.92094 0.95273 0.95957 0.91686 0.95693 0.93077 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.01 71.98 0.65 -1.90 16 2 C -0.06 -1.37 2.99 -11.54 -0.03 -1.41 16 3 C -0.14 -2.67 9.01 71.98 0.65 -2.02 16 4 C -0.09 -2.63 4.78 -19.84 -0.09 -2.73 16 5 C -0.10 -2.89 8.71 22.26 0.19 -2.70 16 6 C -0.13 -4.67 8.98 22.27 0.20 -4.47 16 7 C -0.04 -1.88 4.72 -19.87 -0.09 -1.97 16 8 C 0.09 4.20 0.58 -53.67 -0.03 4.17 16 9 C -0.12 -5.58 6.92 71.98 0.50 -5.09 16 10 C -0.12 -5.59 8.10 71.98 0.58 -5.01 16 11 C -0.51 -27.34 7.59 25.60 0.19 -27.14 16 12 H 0.04 2.32 7.48 -2.91 -0.02 2.30 16 13 C 0.03 1.42 5.15 84.66 0.44 1.86 16 14 N -0.90 -49.01 9.35 21.45 0.20 -48.81 16 15 Si 0.94 43.16 29.54 68.60 2.03 45.19 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 C -0.12 -4.72 8.40 22.29 0.19 -4.54 16 20 C -0.04 -1.49 6.31 22.33 0.14 -1.35 16 21 Cl -0.08 -2.36 27.01 -2.72 -0.07 -2.43 16 22 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 23 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 1.09 7.39 -2.39 -0.02 1.08 16 25 H 0.08 1.86 6.17 -2.39 -0.01 1.84 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.14 7.39 -2.38 -0.02 1.12 16 29 H 0.15 3.37 7.10 -2.91 -0.02 3.35 16 30 H 0.13 4.47 5.90 -2.91 -0.02 4.45 16 31 H 0.03 1.38 7.31 -2.39 -0.02 1.37 16 32 H 0.06 3.10 6.08 -2.39 -0.01 3.08 16 33 H 0.03 1.28 7.72 -2.39 -0.02 1.26 16 34 H 0.02 1.03 7.64 -2.39 -0.02 1.01 16 35 H 0.06 3.38 6.06 -2.38 -0.01 3.37 16 36 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 38 H 0.11 4.83 7.72 -2.91 -0.02 4.81 16 Total: -1.00 -55.94 311.45 6.67 -49.28 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.04 Total: 11.07 kcal Atomic # 6 Polarization: -57.77 SS G_CDS: 3.48 Total: -54.30 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.20 Total: -48.81 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.07 Total: -2.43 kcal Total: -55.94 6.67 -49.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260417664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.355 kcal (2) G-P(sol) polarization free energy of solvation -55.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds