Wall clock time and date at job start Mon Mar 30 2020 07:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47158 * 2 1 4 4 C 1.46847 * 111.00144 * 170.00079 * 3 2 1 5 5 C 1.53044 * 109.51335 * 185.83239 * 4 3 2 6 6 C 1.53117 * 109.27792 * 300.82256 * 5 4 3 7 7 C 1.50693 * 109.52032 * 177.55923 * 6 5 4 8 8 N 1.29523 * 124.56568 * 299.70181 * 7 6 5 9 9 C 1.30676 * 117.63265 * 179.76677 * 8 7 6 10 10 C 1.38585 * 113.54957 * 0.51190 * 9 8 7 11 11 C 1.40043 * 126.25493 * 179.76977 * 10 9 8 12 12 H 1.08003 * 120.00190 * 179.97438 * 11 10 9 13 13 C 1.40070 * 119.99889 * 359.95759 * 11 10 9 14 14 N 1.30868 * 120.00181 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00019 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46735 * 90.00483 * 15 13 11 17 17 H 1.48494 * 109.47126 * 210.00102 * 15 13 11 18 18 H 1.48494 * 109.47214 * 330.00342 * 15 13 11 19 19 S 1.70889 * 124.55995 * 120.00344 * 7 6 5 20 20 C 1.53127 * 109.15989 * 57.65607 * 6 5 4 21 21 C 1.46830 * 110.98168 * 294.21498 * 3 2 1 22 22 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46999 * 300.00307 * 1 2 3 24 24 H 1.08998 * 109.46977 * 59.99901 * 1 2 3 25 25 H 1.09001 * 109.47466 * 239.99936 * 2 1 3 26 26 H 1.09002 * 109.47083 * 119.99350 * 2 1 3 27 27 H 1.09002 * 109.46448 * 65.81961 * 4 3 2 28 28 H 1.08994 * 109.45958 * 305.84326 * 4 3 2 29 29 H 1.09001 * 109.49858 * 60.76701 * 5 4 3 30 30 H 1.09000 * 109.49965 * 180.88251 * 5 4 3 31 31 H 1.09004 * 109.52347 * 297.75632 * 6 5 4 32 32 H 1.08002 * 123.22556 * 180.28850 * 9 8 7 33 33 H 0.96996 * 119.99907 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.50037 * 62.28538 * 20 6 5 35 35 H 1.08996 * 109.50157 * 182.36309 * 20 6 5 36 36 H 1.08995 * 109.46742 * 54.13906 * 21 3 2 37 37 H 1.09004 * 109.45381 * 294.16241 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4311 0.2380 5 6 3.9172 2.8876 0.3760 6 6 3.5672 3.6482 -0.9060 7 6 3.9529 5.0969 -0.7533 8 7 3.4764 5.8928 0.1506 9 6 3.9102 7.1254 0.1624 10 6 4.8339 7.3969 -0.8345 11 6 5.4634 8.6259 -1.0679 12 1 6.1712 8.7249 -1.8776 13 6 5.1748 9.7268 -0.2514 14 7 4.3173 9.6068 0.7299 15 14 6.0150 11.3660 -0.5622 16 1 5.1991 12.1688 -1.5084 17 1 6.1536 12.1022 0.7199 18 1 7.3601 11.1300 -1.1454 19 16 5.0724 5.9127 -1.7541 20 6 2.0602 3.5436 -1.1569 21 6 1.6648 2.0681 -1.2503 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8901 27 1 3.9888 0.9682 -0.6002 28 1 3.7027 0.8903 1.1548 29 1 3.4071 3.3471 1.2226 30 1 4.9947 2.9224 0.5370 31 1 4.1074 3.2130 -1.7468 32 1 3.5779 7.8630 0.8780 33 1 4.1178 10.3691 1.2955 34 1 1.5210 4.0134 -0.3344 35 1 1.8109 4.0476 -2.0906 36 1 0.5901 1.9898 -1.4146 37 1 2.1942 1.6022 -2.0815 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260776128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:01 Heat of formation + Delta-G solvation = 13.257765 kcal Electronic energy + Delta-G solvation = -17827.931638 eV Core-core repulsion = 15116.441297 eV Total energy + Delta-G solvation = -2711.490341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.97701 -37.35482 -34.62408 -33.63602 -30.69085 -30.07326 -28.91681 -25.85554 -23.84526 -22.87953 -22.17669 -21.09015 -19.85717 -18.55283 -16.87977 -16.35479 -15.66569 -15.03240 -14.90165 -14.27912 -13.96185 -13.52880 -13.41969 -13.18195 -12.92465 -12.36608 -12.08350 -12.01331 -11.68119 -11.60266 -11.39288 -11.35759 -11.25078 -10.99617 -10.74790 -10.57223 -10.21819 -10.02962 -9.88453 -9.64522 -9.56124 -8.14455 -7.93697 -7.83369 -7.16854 -6.95258 -4.55060 2.44136 2.90101 2.95266 3.03571 3.23856 3.64414 3.75688 4.04063 4.42557 4.96059 5.09291 5.15724 5.19178 5.42149 5.45311 5.50675 5.62526 5.65194 5.77692 5.79606 5.88128 5.96421 6.08751 6.14178 6.19769 6.29465 6.50424 6.55893 6.73167 6.84432 7.01079 7.18696 7.30115 7.31331 7.49435 7.81557 8.16772 8.38581 8.69247 9.85255 9.86895 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.051402 B = 0.004020 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.594276 B = 6962.801590 C = 7127.324349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.537 5.537 4 C 0.059 3.941 5 C -0.100 4.100 6 C 0.028 3.972 7 C -0.117 4.117 8 N -0.417 5.417 9 C -0.142 4.142 10 C 0.016 3.984 11 C -0.378 4.378 12 H 0.086 0.914 13 C 0.064 3.936 14 N -0.767 5.767 15 Si 0.934 3.066 16 H -0.265 1.265 17 H -0.272 1.272 18 H -0.259 1.259 19 S -0.071 6.071 20 C -0.101 4.101 21 C 0.056 3.944 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.070 0.930 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.195 0.805 33 H 0.288 0.712 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 -10.176 -1.786 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.262 5.262 4 C -0.069 4.069 5 C -0.140 4.140 6 C 0.005 3.995 7 C -0.386 4.386 8 N -0.128 5.128 9 C -0.295 4.295 10 C -0.106 4.106 11 C -0.415 4.415 12 H 0.104 0.896 13 C -0.159 4.159 14 N -0.391 5.391 15 Si 0.757 3.243 16 H -0.190 1.190 17 H -0.197 1.197 18 H -0.182 1.182 19 S 0.179 5.821 20 C -0.140 4.140 21 C -0.072 4.072 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.211 0.789 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.753 -10.433 -1.669 10.919 hybrid contribution 0.532 0.944 -0.231 1.108 sum -2.221 -9.489 -1.900 9.929 Atomic orbital electron populations 1.21807 0.95122 1.01070 1.02654 1.22042 0.96005 0.89450 1.00251 1.61942 1.14222 1.14578 1.35491 1.22127 0.86905 0.98105 0.99768 1.21587 1.00358 0.92791 0.99217 1.19163 0.94898 0.88925 0.96467 1.24917 1.10197 0.99510 1.04017 1.65333 1.23112 1.04411 1.19992 1.23116 1.06815 0.92498 1.07118 1.23286 0.98040 0.94090 0.95150 1.19020 1.18761 0.92161 1.11521 0.89626 1.26109 0.94507 1.01555 0.93680 1.69479 1.24685 1.32497 1.12468 0.85864 0.80252 0.79138 0.79024 1.18958 1.19652 1.18228 1.82998 1.49893 1.08658 1.40536 1.21585 0.96266 0.93774 1.02333 1.22181 1.00237 0.95394 0.89368 0.92697 0.91793 0.92639 0.95440 0.91122 0.95467 0.91241 0.90390 0.92054 0.92380 0.78904 0.89974 0.90397 0.92102 0.90923 0.95520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.84 37.16 0.37 -1.14 16 2 C 0.05 0.58 5.68 -3.82 -0.02 0.55 16 3 N -0.54 -7.65 4.66 -234.68 -1.09 -8.75 16 4 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 5 C -0.10 -1.77 5.35 -26.65 -0.14 -1.91 16 6 C 0.03 0.54 2.68 -91.65 -0.25 0.29 16 7 C -0.12 -2.79 5.89 -13.25 -0.08 -2.87 16 8 N -0.42 -11.03 10.46 -10.84 -0.11 -11.14 16 9 C -0.14 -3.95 10.55 -17.92 -0.19 -4.14 16 10 C 0.02 0.42 6.30 -38.78 -0.24 0.18 16 11 C -0.38 -9.68 9.42 -38.22 -0.36 -10.04 16 12 H 0.09 2.06 7.85 -52.48 -0.41 1.65 16 13 C 0.06 1.52 5.50 -17.28 -0.09 1.43 16 14 N -0.77 -18.87 10.18 55.56 0.57 -18.30 16 15 Si 0.93 17.49 29.56 -169.99 -5.03 12.47 16 16 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 17 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 18 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 19 S -0.07 -1.72 23.11 -107.50 -2.48 -4.20 16 20 C -0.10 -1.78 5.35 -26.65 -0.14 -1.92 16 21 C 0.06 0.81 5.29 -3.84 -0.02 0.79 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 25 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 26 H 0.07 0.74 7.99 -51.93 -0.41 0.33 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 29 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 32 H 0.20 5.54 5.36 -52.49 -0.28 5.26 16 33 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.95 6.21 -51.93 -0.32 0.63 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 308.13 15.07 4.64 4.64 Total: -1.00 -27.53 308.13 -10.24 -37.77 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.54 Total: 5.46 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -1.19 Total: -17.95 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.64 Total: -38.19 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.48 Total: -4.20 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.53 -10.24 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260776128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.026 kcal (2) G-P(sol) polarization free energy of solvation -27.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds