Wall clock time and date at job start Mon Mar 30 2020 07:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47158 * 2 1 4 4 C 1.46847 * 111.00144 * 170.00079 * 3 2 1 5 5 C 1.53044 * 109.51335 * 185.83239 * 4 3 2 6 6 C 1.53117 * 109.27792 * 300.82256 * 5 4 3 7 7 C 1.50693 * 109.52032 * 177.55923 * 6 5 4 8 8 N 1.29523 * 124.56568 * 299.70181 * 7 6 5 9 9 C 1.30676 * 117.63265 * 179.76677 * 8 7 6 10 10 C 1.38585 * 113.54957 * 0.51190 * 9 8 7 11 11 C 1.40043 * 126.25493 * 179.76977 * 10 9 8 12 12 H 1.08003 * 120.00190 * 179.97438 * 11 10 9 13 13 C 1.40070 * 119.99889 * 359.95759 * 11 10 9 14 14 N 1.30868 * 120.00181 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00019 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46735 * 90.00483 * 15 13 11 17 17 H 1.48494 * 109.47126 * 210.00102 * 15 13 11 18 18 H 1.48494 * 109.47214 * 330.00342 * 15 13 11 19 19 S 1.70889 * 124.55995 * 120.00344 * 7 6 5 20 20 C 1.53127 * 109.15989 * 57.65607 * 6 5 4 21 21 C 1.46830 * 110.98168 * 294.21498 * 3 2 1 22 22 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46999 * 300.00307 * 1 2 3 24 24 H 1.08998 * 109.46977 * 59.99901 * 1 2 3 25 25 H 1.09001 * 109.47466 * 239.99936 * 2 1 3 26 26 H 1.09002 * 109.47083 * 119.99350 * 2 1 3 27 27 H 1.09002 * 109.46448 * 65.81961 * 4 3 2 28 28 H 1.08994 * 109.45958 * 305.84326 * 4 3 2 29 29 H 1.09001 * 109.49858 * 60.76701 * 5 4 3 30 30 H 1.09000 * 109.49965 * 180.88251 * 5 4 3 31 31 H 1.09004 * 109.52347 * 297.75632 * 6 5 4 32 32 H 1.08002 * 123.22556 * 180.28850 * 9 8 7 33 33 H 0.96996 * 119.99907 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.50037 * 62.28538 * 20 6 5 35 35 H 1.08996 * 109.50157 * 182.36309 * 20 6 5 36 36 H 1.08995 * 109.46742 * 54.13906 * 21 3 2 37 37 H 1.09004 * 109.45381 * 294.16241 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4311 0.2380 5 6 3.9172 2.8876 0.3760 6 6 3.5672 3.6482 -0.9060 7 6 3.9529 5.0969 -0.7533 8 7 3.4764 5.8928 0.1506 9 6 3.9102 7.1254 0.1624 10 6 4.8339 7.3969 -0.8345 11 6 5.4634 8.6259 -1.0679 12 1 6.1712 8.7249 -1.8776 13 6 5.1748 9.7268 -0.2514 14 7 4.3173 9.6068 0.7299 15 14 6.0150 11.3660 -0.5622 16 1 5.1991 12.1688 -1.5084 17 1 6.1536 12.1022 0.7199 18 1 7.3601 11.1300 -1.1454 19 16 5.0724 5.9127 -1.7541 20 6 2.0602 3.5436 -1.1569 21 6 1.6648 2.0681 -1.2503 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8901 27 1 3.9888 0.9682 -0.6002 28 1 3.7027 0.8903 1.1548 29 1 3.4071 3.3471 1.2226 30 1 4.9947 2.9224 0.5370 31 1 4.1074 3.2130 -1.7468 32 1 3.5779 7.8630 0.8780 33 1 4.1178 10.3691 1.2955 34 1 1.5210 4.0134 -0.3344 35 1 1.8109 4.0476 -2.0906 36 1 0.5901 1.9898 -1.4146 37 1 2.1942 1.6022 -2.0815 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260776128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:01 Heat of formation + Delta-G solvation = -3.111108 kcal Electronic energy + Delta-G solvation = -17828.641446 eV Core-core repulsion = 15116.441297 eV Total energy + Delta-G solvation = -2712.200149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34366 -39.15279 -36.26755 -35.15329 -31.95721 -31.50314 -30.52461 -27.46257 -25.54414 -24.25349 -23.68065 -22.32672 -21.39978 -20.25423 -18.65724 -18.24306 -16.89215 -16.61572 -16.08032 -15.65581 -15.36104 -15.00780 -14.97071 -14.51854 -14.31030 -13.99084 -13.77492 -13.32094 -13.27108 -13.06436 -12.96332 -12.58643 -12.56648 -12.09410 -12.02002 -12.00070 -11.72831 -11.57326 -11.51599 -11.35044 -11.17693 -9.91780 -9.81623 -9.19211 -9.14321 -8.76948 -6.53238 0.57639 1.22725 1.40684 1.51387 1.56598 1.67788 2.13684 2.52464 2.98712 3.10632 3.80902 3.95870 4.01462 4.22837 4.25422 4.34370 4.42730 4.54632 4.60138 4.66780 4.68599 4.76773 4.86827 4.88217 4.98636 5.06482 5.16350 5.19698 5.24685 5.36447 5.40810 5.51869 5.58896 5.83049 6.19570 6.22635 6.26882 6.44671 6.61732 7.86090 8.07451 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.051402 B = 0.004020 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.594276 B = 6962.801590 C = 7127.324349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 N -0.555 5.555 4 C 0.067 3.933 5 C -0.094 4.094 6 C 0.024 3.976 7 C -0.107 4.107 8 N -0.441 5.441 9 C -0.183 4.183 10 C -0.015 4.015 11 C -0.403 4.403 12 H 0.095 0.905 13 C 0.023 3.977 14 N -0.795 5.795 15 Si 1.014 2.986 16 H -0.256 1.256 17 H -0.261 1.261 18 H -0.251 1.251 19 S -0.053 6.053 20 C -0.094 4.094 21 C 0.065 3.935 22 H 0.076 0.924 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.178 0.822 33 H 0.300 0.700 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.154 -11.203 -2.693 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.281 5.281 4 C -0.061 4.061 5 C -0.133 4.133 6 C 0.002 3.998 7 C -0.378 4.378 8 N -0.152 5.152 9 C -0.335 4.335 10 C -0.137 4.137 11 C -0.439 4.439 12 H 0.113 0.887 13 C -0.197 4.197 14 N -0.419 5.419 15 Si 0.832 3.168 16 H -0.181 1.181 17 H -0.185 1.185 18 H -0.175 1.175 19 S 0.198 5.802 20 C -0.133 4.133 21 C -0.063 4.063 22 H 0.094 0.906 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.194 0.806 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.359 -11.470 -2.560 11.987 hybrid contribution 0.372 1.210 0.068 1.267 sum -1.987 -10.260 -2.493 10.744 Atomic orbital electron populations 1.21794 0.94307 1.02297 1.01989 1.22129 0.96642 0.87633 1.01271 1.61909 1.14083 1.16678 1.35447 1.22024 0.87324 0.95429 1.01276 1.21477 0.99885 0.94964 0.97019 1.19391 0.96247 0.86255 0.97923 1.25834 1.08526 1.01060 1.02414 1.65325 1.24127 1.04430 1.21325 1.22970 1.08937 0.93152 1.08446 1.23632 0.98475 0.95781 0.95777 1.19446 1.19284 0.92663 1.12523 0.88670 1.27242 0.94640 1.05140 0.92681 1.69541 1.25196 1.34181 1.12965 0.84711 0.79127 0.73610 0.79367 1.18076 1.18506 1.17461 1.82734 1.49952 1.07366 1.40113 1.21472 0.94589 0.96405 1.00862 1.22063 1.01315 0.92794 0.90081 0.90558 0.92925 0.92823 0.94304 0.90112 0.94003 0.89521 0.93278 0.92385 0.90928 0.80572 0.88845 0.93282 0.92503 0.89428 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.84 71.98 0.71 -1.86 16 2 C 0.05 0.99 5.68 86.30 0.49 1.48 16 3 N -0.56 -14.61 4.66 -896.39 -4.17 -18.78 16 4 C 0.07 1.78 5.46 86.33 0.47 2.26 16 5 C -0.09 -3.29 5.35 30.65 0.16 -3.12 16 6 C 0.02 0.93 2.68 -11.46 -0.03 0.90 16 7 C -0.11 -5.19 5.89 88.45 0.52 -4.67 16 8 N -0.44 -24.30 10.46 -188.22 -1.97 -26.27 16 9 C -0.18 -10.73 10.55 84.95 0.90 -9.83 16 10 C -0.02 -0.86 6.30 22.79 0.14 -0.71 16 11 C -0.40 -21.01 9.42 23.15 0.22 -20.80 16 12 H 0.10 4.61 7.85 -2.91 -0.02 4.59 16 13 C 0.02 1.09 5.50 85.28 0.47 1.56 16 14 N -0.79 -40.07 10.18 21.86 0.22 -39.85 16 15 Si 1.01 35.09 29.56 68.60 2.03 37.11 16 16 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 17 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 18 H -0.25 -8.35 7.11 99.48 0.71 -7.65 16 19 S -0.05 -2.56 23.11 -56.49 -1.31 -3.87 16 20 C -0.09 -3.30 5.35 30.65 0.16 -3.14 16 21 C 0.07 1.75 5.29 86.33 0.46 2.21 16 22 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 0.95 6.43 -2.39 -0.02 0.94 16 25 H 0.04 0.70 8.12 -2.39 -0.02 0.68 16 26 H 0.08 1.43 7.99 -2.39 -0.02 1.41 16 27 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 2.02 8.01 -2.39 -0.02 2.00 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 2.57 8.12 -2.38 -0.02 2.55 16 32 H 0.18 10.76 5.36 -2.91 -0.02 10.75 16 33 H 0.30 13.31 8.30 -92.71 -0.77 12.54 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 2.10 6.21 -2.39 -0.01 2.09 16 37 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -61.72 308.13 0.53 -61.20 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 1.05 Total: 26.18 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 4.67 Total: -35.73 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -5.92 Total: -84.89 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.11 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -1.31 Total: -3.87 kcal Total: -61.72 0.53 -61.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260776128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.085 kcal (2) G-P(sol) polarization free energy of solvation -61.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds