Wall clock time and date at job start Mon Mar 30 2020 07:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46848 * 111.00378 * 2 1 4 4 C 1.53036 * 109.52382 * 185.83538 * 3 2 1 5 5 C 1.53122 * 109.27702 * 300.82019 * 4 3 2 6 6 C 1.53112 * 109.16145 * 57.65690 * 5 4 3 7 7 C 1.46848 * 110.99572 * 124.20892 * 2 1 3 8 8 H 1.09006 * 109.46311 * 294.16593 * 7 2 1 9 9 C 1.50703 * 109.46413 * 54.14268 * 7 2 1 10 10 N 1.29030 * 124.91665 * 225.32933 * 9 7 2 11 11 C 1.31780 * 117.12352 * 180.22435 * 10 9 7 12 12 C 1.50703 * 122.75127 * 179.75152 * 11 10 9 13 13 C 1.50701 * 109.47151 * 264.74151 * 12 11 10 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27762 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.33644 * 114.50003 * 359.48594 * 11 10 9 22 22 S 1.70976 * 124.91676 * 45.02555 * 9 7 2 23 23 H 1.09004 * 109.47117 * 295.79832 * 1 2 3 24 24 H 1.08998 * 109.46497 * 55.78843 * 1 2 3 25 25 H 1.08994 * 109.47244 * 175.79121 * 1 2 3 26 26 H 1.08997 * 109.45991 * 305.85239 * 3 2 1 27 27 H 1.08999 * 109.46218 * 65.81709 * 3 2 1 28 28 H 1.09004 * 109.50104 * 60.75968 * 4 3 2 29 29 H 1.08997 * 109.50084 * 180.87660 * 4 3 2 30 30 H 1.08999 * 109.52062 * 177.55707 * 5 4 3 31 31 H 1.08993 * 109.52304 * 297.68403 * 5 4 3 32 32 H 1.09004 * 109.50424 * 182.40496 * 6 5 4 33 33 H 1.09003 * 109.51225 * 62.28212 * 6 5 4 34 34 H 1.09000 * 109.47088 * 144.73290 * 12 11 10 35 35 H 1.09007 * 109.46560 * 24.73796 * 12 11 10 36 36 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 37 37 H 1.07994 * 126.03430 * 180.26112 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5183 1.3341 -0.1466 5 6 4.1188 0.5368 1.0146 6 6 3.5181 -0.8715 1.0210 7 6 1.9952 -0.7708 1.1338 8 1 1.7325 -0.2707 2.0661 9 6 1.3981 -2.1544 1.1207 10 7 0.9229 -2.7635 2.1541 11 6 0.4406 -3.9757 1.9680 12 6 -0.1397 -4.8028 3.0862 13 6 0.9210 -5.7234 3.6327 14 1 1.9157 -5.7110 3.2120 15 6 0.6199 -6.5857 4.6654 16 7 -0.5914 -6.6011 5.1773 17 14 1.9325 -7.7323 5.3375 18 1 2.6598 -7.0581 6.4429 19 1 1.2931 -8.9711 5.8490 20 1 2.8883 -8.0791 4.2553 21 6 0.5030 -4.4092 0.7054 22 16 1.2454 -3.1413 -0.2671 23 1 -0.3633 0.4473 0.9253 24 1 -0.3632 0.5778 -0.8499 25 1 -0.3633 -1.0248 -0.0754 26 1 1.5636 1.9256 -0.8330 27 1 1.7325 1.8608 0.9375 28 1 3.7815 0.8565 -1.0905 29 1 3.9100 2.3511 -0.1310 30 1 5.1997 0.4712 0.8908 31 1 3.8897 1.0359 1.9560 32 1 3.9098 -1.4303 1.8710 33 1 3.7813 -1.3838 0.0956 34 1 -0.9731 -5.3937 2.7063 35 1 -0.4931 -4.1442 3.8796 36 1 -0.8033 -7.2080 5.9036 37 1 0.1592 -5.3673 0.3449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260792333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:39 Heat of formation + Delta-G solvation = 33.454630 kcal Electronic energy + Delta-G solvation = -18019.135717 eV Core-core repulsion = 15308.521177 eV Total energy + Delta-G solvation = -2710.614540 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.73161 -38.50458 -33.71074 -33.30079 -32.01918 -29.84467 -27.35607 -26.80356 -24.83890 -23.40454 -22.93252 -21.14321 -19.98594 -18.80466 -17.00469 -16.33739 -15.76575 -15.30975 -14.97706 -14.56465 -14.49647 -14.25901 -13.38263 -13.19886 -13.12319 -12.53166 -12.50324 -12.28569 -12.02111 -11.78804 -11.53861 -11.29908 -11.05025 -10.85635 -10.73394 -10.64486 -10.52303 -10.44131 -9.71345 -9.44465 -8.97184 -8.72634 -8.44918 -8.41929 -7.84425 -6.04320 -4.07263 1.37122 2.02346 2.45858 3.31437 3.36847 3.40380 3.59093 3.76675 4.43934 4.46663 4.69950 4.81987 4.93044 5.08199 5.24441 5.31245 5.40904 5.43869 5.49660 5.57446 5.66593 5.76926 5.80905 5.86443 5.94769 6.00973 6.07543 6.10034 6.27236 6.38685 6.88064 6.95418 7.08384 7.49352 7.56817 7.91123 8.29482 8.59010 8.95390 9.55603 11.06123 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.004798 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.504794 B = 5834.133893 C = 6206.117466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.058 3.942 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.109 4.109 7 C 0.167 3.833 8 H 0.068 0.932 9 C 0.040 3.960 10 N -0.458 5.458 11 C 0.109 3.891 12 C 0.085 3.915 13 C -0.508 4.508 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.270 4.270 22 S 0.089 5.911 23 H 0.028 0.972 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 14.754 -12.167 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.070 4.070 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.148 4.148 7 C 0.055 3.945 8 H 0.086 0.914 9 C -0.239 4.239 10 N -0.173 5.173 11 C -0.021 4.021 12 C 0.045 3.955 13 C -0.547 4.547 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.408 4.408 22 S 0.342 5.658 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.944 14.813 -13.010 20.592 hybrid contribution -0.024 -0.910 1.903 2.109 sum 5.920 13.903 -11.107 18.754 Atomic orbital electron populations 1.22458 0.86835 1.03103 1.00465 1.61933 1.08128 1.13573 1.42520 1.22088 0.95652 0.88582 1.00661 1.21617 0.94353 1.00083 0.99515 1.21582 1.00081 0.95444 0.98634 1.21665 0.92293 0.97502 1.03309 1.19977 0.94345 0.86995 0.93134 0.91426 1.26593 1.04315 1.00833 0.92148 1.66189 1.11253 1.09364 1.30516 1.21176 0.96174 0.89265 0.95452 1.17985 0.95739 0.92495 0.89285 1.20978 0.96746 1.19512 1.17481 0.92659 1.24969 0.95564 0.97265 0.96409 1.69949 1.19176 1.38171 1.26019 0.86510 0.81617 0.80148 0.79274 1.20557 1.21096 1.19844 1.26846 1.12692 1.04606 0.96672 1.83566 1.58098 1.09006 1.15120 0.95363 0.91171 0.90879 0.90454 0.94712 0.90917 0.91489 0.91376 0.91996 0.90691 0.90681 0.94535 0.94462 0.92786 0.81205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.18 60.07 0.55 0.79 16 2 N -0.54 -6.66 4.55 -236.32 -1.08 -7.73 16 3 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 4 C -0.12 -1.02 6.09 -26.65 -0.16 -1.19 16 5 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16 6 C -0.11 -1.38 5.36 -26.65 -0.14 -1.52 16 7 C 0.17 2.43 2.35 -68.87 -0.16 2.27 16 8 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 9 C 0.04 0.72 4.84 -13.45 -0.07 0.65 16 10 N -0.46 -10.11 10.53 -8.05 -0.08 -10.19 16 11 C 0.11 2.54 5.93 -84.22 -0.50 2.04 16 12 C 0.08 2.28 5.39 -29.03 -0.16 2.12 16 13 C -0.51 -14.66 9.09 -34.44 -0.31 -14.97 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 17 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.27 -5.43 11.14 29.12 0.32 -5.11 16 22 S 0.09 1.48 21.97 -107.50 -2.36 -0.88 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 25 H 0.07 1.04 6.11 -51.93 -0.32 0.72 16 26 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.17 3.16 8.06 -52.49 -0.42 2.74 16 LS Contribution 313.44 15.07 4.72 4.72 Total: -1.00 -30.80 313.44 -9.76 -40.56 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.77 Total: -3.28 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -0.90 Total: -14.08 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.42 Total: -43.92 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.36 Total: -0.88 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.80 -9.76 -40.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.014 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds