Wall clock time and date at job start Mon Mar 30 2020 07:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46848 * 111.00378 * 2 1 4 4 C 1.53036 * 109.52382 * 185.83538 * 3 2 1 5 5 C 1.53122 * 109.27702 * 300.82019 * 4 3 2 6 6 C 1.53112 * 109.16145 * 57.65690 * 5 4 3 7 7 C 1.46848 * 110.99572 * 124.20892 * 2 1 3 8 8 H 1.09006 * 109.46311 * 294.16593 * 7 2 1 9 9 C 1.50703 * 109.46413 * 54.14268 * 7 2 1 10 10 N 1.29030 * 124.91665 * 225.32933 * 9 7 2 11 11 C 1.31780 * 117.12352 * 180.22435 * 10 9 7 12 12 C 1.50703 * 122.75127 * 179.75152 * 11 10 9 13 13 C 1.50701 * 109.47151 * 264.74151 * 12 11 10 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27762 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.33644 * 114.50003 * 359.48594 * 11 10 9 22 22 S 1.70976 * 124.91676 * 45.02555 * 9 7 2 23 23 H 1.09004 * 109.47117 * 295.79832 * 1 2 3 24 24 H 1.08998 * 109.46497 * 55.78843 * 1 2 3 25 25 H 1.08994 * 109.47244 * 175.79121 * 1 2 3 26 26 H 1.08997 * 109.45991 * 305.85239 * 3 2 1 27 27 H 1.08999 * 109.46218 * 65.81709 * 3 2 1 28 28 H 1.09004 * 109.50104 * 60.75968 * 4 3 2 29 29 H 1.08997 * 109.50084 * 180.87660 * 4 3 2 30 30 H 1.08999 * 109.52062 * 177.55707 * 5 4 3 31 31 H 1.08993 * 109.52304 * 297.68403 * 5 4 3 32 32 H 1.09004 * 109.50424 * 182.40496 * 6 5 4 33 33 H 1.09003 * 109.51225 * 62.28212 * 6 5 4 34 34 H 1.09000 * 109.47088 * 144.73290 * 12 11 10 35 35 H 1.09007 * 109.46560 * 24.73796 * 12 11 10 36 36 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 37 37 H 1.07994 * 126.03430 * 180.26112 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5183 1.3341 -0.1466 5 6 4.1188 0.5368 1.0146 6 6 3.5181 -0.8715 1.0210 7 6 1.9952 -0.7708 1.1338 8 1 1.7325 -0.2707 2.0661 9 6 1.3981 -2.1544 1.1207 10 7 0.9229 -2.7635 2.1541 11 6 0.4406 -3.9757 1.9680 12 6 -0.1397 -4.8028 3.0862 13 6 0.9210 -5.7234 3.6327 14 1 1.9157 -5.7110 3.2120 15 6 0.6199 -6.5857 4.6654 16 7 -0.5914 -6.6011 5.1773 17 14 1.9325 -7.7323 5.3375 18 1 2.6598 -7.0581 6.4429 19 1 1.2931 -8.9711 5.8490 20 1 2.8883 -8.0791 4.2553 21 6 0.5030 -4.4092 0.7054 22 16 1.2454 -3.1413 -0.2671 23 1 -0.3633 0.4473 0.9253 24 1 -0.3632 0.5778 -0.8499 25 1 -0.3633 -1.0248 -0.0754 26 1 1.5636 1.9256 -0.8330 27 1 1.7325 1.8608 0.9375 28 1 3.7815 0.8565 -1.0905 29 1 3.9100 2.3511 -0.1310 30 1 5.1997 0.4712 0.8908 31 1 3.8897 1.0359 1.9560 32 1 3.9098 -1.4303 1.8710 33 1 3.7813 -1.3838 0.0956 34 1 -0.9731 -5.3937 2.7063 35 1 -0.4931 -4.1442 3.8796 36 1 -0.8033 -7.2080 5.9036 37 1 0.1592 -5.3673 0.3449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260792333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:38 Heat of formation + Delta-G solvation = 13.514172 kcal Electronic energy + Delta-G solvation = -18020.000400 eV Core-core repulsion = 15308.521177 eV Total energy + Delta-G solvation = -2711.479223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07731 -39.74561 -35.42068 -34.54364 -33.42866 -31.41491 -29.15029 -27.81964 -26.31926 -25.15196 -23.87673 -22.45943 -21.10348 -20.20047 -18.62110 -18.42688 -16.94459 -16.61502 -16.40543 -16.09257 -15.48659 -15.35980 -14.84961 -14.56017 -14.16238 -14.08491 -13.85671 -13.75989 -13.45581 -13.22943 -12.95972 -12.72895 -12.63258 -12.37161 -12.25095 -11.71041 -11.65458 -11.59361 -11.52697 -11.33572 -10.65430 -10.49884 -10.24251 -9.47344 -9.41532 -8.24577 -6.37728 -0.14528 0.55888 0.90318 1.37018 1.39181 1.50283 1.96072 2.39785 2.65697 3.06658 3.24157 3.82861 3.94129 3.98885 4.17574 4.24998 4.35025 4.44128 4.45201 4.53456 4.63281 4.69030 4.77622 4.83960 4.94499 5.01037 5.06573 5.14475 5.19535 5.25171 5.34018 5.42166 5.47075 5.67021 5.88190 6.05384 6.09762 6.70958 6.99738 7.30154 8.85832 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.004798 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.504794 B = 5834.133893 C = 6206.117466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.535 5.535 3 C 0.054 3.946 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.107 4.107 7 C 0.167 3.833 8 H 0.052 0.948 9 C 0.039 3.961 10 N -0.503 5.503 11 C 0.078 3.922 12 C 0.094 3.906 13 C -0.528 4.528 14 H 0.049 0.951 15 C 0.007 3.993 16 N -0.928 5.928 17 Si 0.969 3.031 18 H -0.274 1.274 19 H -0.274 1.274 20 H -0.265 1.265 21 C -0.282 4.282 22 S 0.183 5.817 23 H 0.020 0.980 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.099 0.901 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.019 0.981 35 H 0.000 1.000 36 H 0.268 0.732 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.615 15.889 -14.105 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.261 5.261 3 C -0.073 4.073 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.146 4.146 7 C 0.055 3.945 8 H 0.070 0.930 9 C -0.239 4.239 10 N -0.219 5.219 11 C -0.052 4.052 12 C 0.055 3.945 13 C -0.566 4.566 14 H 0.068 0.932 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.793 3.207 18 H -0.199 1.199 19 H -0.199 1.199 20 H -0.189 1.189 21 C -0.421 4.421 22 S 0.437 5.563 23 H 0.039 0.961 24 H 0.117 0.883 25 H 0.069 0.931 26 H 0.117 0.883 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.038 0.962 35 H 0.019 0.981 36 H 0.076 0.924 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.917 15.970 -14.972 23.278 hybrid contribution -0.662 -1.158 2.409 2.754 sum 7.256 14.812 -12.562 20.733 Atomic orbital electron populations 1.22477 0.86979 1.02084 1.01362 1.62017 1.08058 1.15228 1.40812 1.22269 0.96623 0.86881 1.01538 1.21621 0.93275 1.01298 0.98832 1.21584 1.00968 0.93449 0.99342 1.21670 0.90765 0.99587 1.02592 1.20074 0.95518 0.85328 0.93550 0.92987 1.27237 1.02412 1.02093 0.92195 1.66103 1.13430 1.09469 1.32884 1.20662 0.98721 0.90262 0.95539 1.17627 0.95160 0.92035 0.89712 1.21229 0.96829 1.20396 1.18188 0.93240 1.25906 0.97938 0.98806 0.96452 1.70070 1.21208 1.39017 1.26502 0.85392 0.78685 0.78001 0.78650 1.19932 1.19910 1.18910 1.27033 1.12177 1.06161 0.96700 1.83142 1.55568 1.05558 1.12062 0.96135 0.88337 0.93141 0.88300 0.94803 0.90678 0.88998 0.89687 0.92087 0.92404 0.90462 0.96238 0.98129 0.92358 0.80276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.18 127.69 1.17 1.62 16 2 N -0.54 -12.18 4.55 -901.57 -4.10 -16.29 16 3 C 0.05 0.88 5.46 86.33 0.47 1.35 16 4 C -0.11 -1.54 6.09 30.65 0.19 -1.36 16 5 C -0.12 -1.96 6.00 30.67 0.18 -1.77 16 6 C -0.11 -2.57 5.36 30.64 0.16 -2.41 16 7 C 0.17 4.75 2.35 44.19 0.10 4.85 16 8 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 9 C 0.04 1.40 4.84 88.52 0.43 1.83 16 10 N -0.50 -23.05 10.53 -179.39 -1.89 -24.94 16 11 C 0.08 3.81 5.93 41.52 0.25 4.05 16 12 C 0.09 5.40 5.39 29.10 0.16 5.56 16 13 C -0.53 -31.59 9.09 25.60 0.23 -31.36 16 14 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 17 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 21 C -0.28 -11.45 11.14 66.78 0.74 -10.71 16 22 S 0.18 5.80 21.97 -56.49 -1.24 4.56 16 23 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 24 H 0.10 1.70 8.09 -2.39 -0.02 1.68 16 25 H 0.05 1.39 6.11 -2.39 -0.01 1.37 16 26 H 0.10 1.25 8.09 -2.39 -0.02 1.23 16 27 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.18 6.72 8.06 -2.91 -0.02 6.70 16 Total: -1.00 -69.16 313.44 0.67 -68.49 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.04 Total: 5.07 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 4.55 Total: -27.44 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -5.71 Total: -98.05 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -1.24 Total: 4.56 kcal Total: -69.16 0.67 -68.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.004 kcal (2) G-P(sol) polarization free energy of solvation -69.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds