Wall clock time and date at job start Mon Mar 30 2020 07:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47128 * 2 1 4 4 C 1.48530 * 111.00663 * 287.39744 * 3 2 1 5 5 C 1.54931 * 103.22986 * 200.28156 * 4 3 2 6 6 C 1.54586 * 102.92475 * 37.41402 * 5 4 3 7 7 H 1.08998 * 110.31294 * 96.95879 * 6 5 4 8 8 C 1.53001 * 110.39222 * 219.08490 * 6 5 4 9 9 C 1.50696 * 109.46990 * 292.15008 * 8 6 5 10 10 N 1.28792 * 124.99255 * 90.00304 * 9 8 6 11 11 C 1.33651 * 116.06432 * 179.97438 * 10 9 8 12 12 C 1.41154 * 122.86716 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00456 * 174.03308 * 12 11 10 14 14 C 1.39724 * 119.99634 * 354.02404 * 12 11 10 15 15 N 1.31023 * 120.00322 * 6.18001 * 14 12 11 16 16 Si 1.86806 * 119.99965 * 186.16999 * 14 12 11 17 17 H 1.48495 * 109.46780 * 90.00519 * 16 14 12 18 18 H 1.48498 * 109.47161 * 210.00700 * 16 14 12 19 19 H 1.48504 * 109.46892 * 330.00511 * 16 14 12 20 20 C 1.37697 * 114.27151 * 359.97438 * 11 10 9 21 21 S 1.70993 * 108.84072 * 359.73615 * 20 11 10 22 22 C 1.47903 * 111.00129 * 169.99820 * 3 2 1 23 23 H 1.09000 * 109.46720 * 300.00278 * 1 2 3 24 24 H 1.09000 * 109.46971 * 59.99489 * 1 2 3 25 25 H 1.09000 * 109.47435 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46816 * 240.00264 * 2 1 3 27 27 H 1.08994 * 109.47164 * 120.00146 * 2 1 3 28 28 H 1.09005 * 110.66442 * 318.71387 * 4 3 2 29 29 H 1.08998 * 110.66480 * 81.83971 * 4 3 2 30 30 H 1.09001 * 110.72274 * 279.04707 * 5 4 3 31 31 H 1.09007 * 110.72450 * 155.77170 * 5 4 3 32 32 H 1.09003 * 109.47368 * 52.15144 * 8 6 5 33 33 H 1.09000 * 109.47125 * 172.14719 * 8 6 5 34 34 H 0.96994 * 120.00147 * 179.97438 * 15 14 12 35 35 H 1.08005 * 125.58047 * 179.97438 * 20 11 10 36 36 H 1.09005 * 109.91288 * 26.49174 * 22 3 2 37 37 H 1.08995 * 109.92019 * 265.20466 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8063 2.0251 -1.3232 5 6 2.8089 3.2063 -1.3114 6 6 4.0330 2.6134 -0.5768 7 1 4.7725 2.2622 -1.2964 8 6 4.6532 3.6573 0.3541 9 6 5.2677 4.7610 -0.4675 10 7 4.6540 5.8270 -0.8493 11 6 5.3724 6.6911 -1.5728 12 6 4.8434 7.9035 -2.0652 13 1 5.4892 8.6123 -2.5620 14 6 3.4839 8.1865 -1.9101 15 7 2.7245 7.3861 -1.2036 16 14 2.7491 9.7064 -2.7100 17 1 2.2681 9.3650 -4.0727 18 1 1.6108 10.1953 -1.8912 19 1 3.7844 10.7671 -2.8017 20 6 6.6728 6.2977 -1.7969 21 16 6.9313 4.7872 -1.0383 22 6 3.4784 1.4314 0.2398 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.0405 1.3297 -2.1292 29 1 0.7831 2.3898 -1.4135 30 1 2.4007 4.0531 -0.7597 31 1 3.0731 3.4981 -2.3279 32 1 3.8801 4.0728 1.0005 33 1 5.4236 3.1872 0.9652 34 1 1.7808 7.5828 -1.0956 35 1 7.4101 6.8541 -2.3567 36 1 3.9392 0.5014 -0.0931 37 1 3.6756 1.5877 1.3003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260800635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:53 Heat of formation + Delta-G solvation = 28.908067 kcal Electronic energy + Delta-G solvation = -18058.537503 eV Core-core repulsion = 15347.725810 eV Total energy + Delta-G solvation = -2710.811693 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.07054 -37.65467 -34.34609 -33.04711 -30.90435 -28.97645 -28.60947 -25.92538 -25.37710 -22.78552 -21.54672 -20.57474 -19.76988 -18.63167 -17.52508 -15.85190 -15.55760 -15.11535 -14.86168 -14.62084 -13.73506 -13.69135 -13.28961 -12.96946 -12.58128 -12.48881 -12.27584 -11.97331 -11.57882 -11.48187 -11.27971 -11.11863 -10.98669 -10.88786 -10.71487 -10.59209 -10.37132 -10.30557 -10.09088 -9.64205 -9.22340 -8.30398 -7.95102 -7.90937 -7.27738 -6.51075 -4.32070 2.35169 2.98896 3.07313 3.11822 3.15175 3.73086 4.03387 4.10494 4.32182 4.81357 4.95960 5.06150 5.21915 5.31687 5.42613 5.48355 5.50890 5.58451 5.67025 5.78700 5.82566 5.92603 5.99299 6.05781 6.12752 6.21108 6.35391 6.49534 6.63171 6.84122 6.93005 7.10082 7.14669 7.19293 7.29606 7.56918 8.23043 8.58802 8.92420 9.65574 10.36266 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.005905 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.559256 B = 4740.351050 C = 6023.651487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 N -0.517 5.517 4 C 0.035 3.965 5 C -0.108 4.108 6 C -0.088 4.088 7 H 0.072 0.928 8 C -0.021 4.021 9 C 0.064 3.936 10 N -0.391 5.391 11 C 0.226 3.774 12 C -0.434 4.434 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.748 5.748 16 Si 0.908 3.092 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.457 4.457 21 S -0.057 6.057 22 C 0.043 3.957 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.273 0.727 35 H 0.134 0.866 36 H 0.040 0.960 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 -11.658 2.093 12.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 N -0.241 5.241 4 C -0.093 4.093 5 C -0.146 4.146 6 C -0.108 4.108 7 H 0.091 0.909 8 C -0.063 4.063 9 C -0.221 4.221 10 N -0.105 5.105 11 C 0.105 3.895 12 C -0.468 4.468 13 H 0.100 0.900 14 C -0.149 4.149 15 N -0.371 5.371 16 Si 0.733 3.267 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.596 4.596 21 S 0.191 5.809 22 C -0.085 4.085 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.152 0.848 36 H 0.059 0.941 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.716 -11.933 2.803 12.808 hybrid contribution -0.076 1.131 -1.518 1.895 sum -3.792 -10.802 1.285 11.520 Atomic orbital electron populations 1.21729 0.94965 1.01020 1.02611 1.22227 0.96305 0.89784 1.00364 1.64768 1.14055 1.15796 1.29526 1.23292 1.00615 0.96157 0.89200 1.22496 0.93545 0.97488 1.01114 1.21942 0.97704 0.94202 0.97000 0.90945 1.20121 0.99214 0.91456 0.95465 1.27741 0.91743 0.98713 1.03872 1.67371 1.32872 1.00305 1.09929 1.18022 0.86936 0.93382 0.91202 1.18940 0.93476 1.01201 1.33218 0.90001 1.25950 0.97409 0.97520 0.93974 1.70101 1.06133 1.33467 1.27388 0.86315 0.79045 0.81688 0.79650 1.19543 1.20249 1.18740 1.25027 1.02854 1.03973 1.27716 1.82633 1.18814 1.23428 1.56066 1.22910 0.87611 0.97090 1.00919 0.91860 0.92767 0.92739 0.95048 0.91172 0.94455 0.90354 0.88795 0.91461 0.89291 0.91116 0.91628 0.84802 0.94115 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.00 37.16 0.37 -1.08 16 2 C 0.04 0.46 5.43 -3.82 -0.02 0.44 16 3 N -0.52 -7.07 5.24 -230.46 -1.21 -8.28 16 4 C 0.03 0.50 5.91 -1.90 -0.01 0.49 16 5 C -0.11 -1.88 6.19 -24.88 -0.15 -2.04 16 6 C -0.09 -1.40 2.99 -89.27 -0.27 -1.66 16 7 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 8 C -0.02 -0.37 4.98 -27.88 -0.14 -0.51 16 9 C 0.06 1.44 6.41 -13.55 -0.09 1.35 16 10 N -0.39 -10.33 8.48 -8.36 -0.07 -10.41 16 11 C 0.23 6.33 6.46 -86.17 -0.56 5.77 16 12 C -0.43 -12.05 9.23 -37.92 -0.35 -12.40 16 13 H 0.08 2.18 7.85 -52.49 -0.41 1.77 16 14 C 0.07 1.92 5.49 -17.34 -0.10 1.82 16 15 N -0.75 -19.86 11.72 55.54 0.65 -19.21 16 16 Si 0.91 19.21 29.56 -169.99 -5.03 14.19 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 20 C -0.46 -11.90 10.98 30.53 0.34 -11.57 16 21 S -0.06 -1.26 23.16 -107.50 -2.49 -3.75 16 22 C 0.04 0.57 6.32 -2.75 -0.02 0.55 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.56 7.37 -51.93 -0.38 0.18 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.34 7.83 -51.93 -0.41 -0.06 16 27 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.04 0.51 7.81 -51.93 -0.41 0.10 16 29 H 0.08 1.10 7.80 -51.93 -0.41 0.70 16 30 H 0.09 1.90 7.79 -51.93 -0.40 1.50 16 31 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 32 H 0.09 1.64 8.04 -51.93 -0.42 1.22 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 35 H 0.13 3.37 8.06 -52.48 -0.42 2.95 16 36 H 0.04 0.49 7.77 -51.93 -0.40 0.09 16 37 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -28.92 314.97 -10.12 -39.04 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.73 Total: 2.50 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -0.99 Total: -18.83 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.63 Total: -37.89 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -2.49 Total: -3.75 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.92 -10.12 -39.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260800635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.948 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds