Wall clock time and date at job start Mon Mar 30 2020 07:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47128 * 2 1 4 4 C 1.48530 * 111.00663 * 287.39744 * 3 2 1 5 5 C 1.54931 * 103.22986 * 200.28156 * 4 3 2 6 6 C 1.54586 * 102.92475 * 37.41402 * 5 4 3 7 7 H 1.08998 * 110.31294 * 96.95879 * 6 5 4 8 8 C 1.53001 * 110.39222 * 219.08490 * 6 5 4 9 9 C 1.50696 * 109.46990 * 292.15008 * 8 6 5 10 10 N 1.28792 * 124.99255 * 90.00304 * 9 8 6 11 11 C 1.33651 * 116.06432 * 179.97438 * 10 9 8 12 12 C 1.41154 * 122.86716 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00456 * 174.03308 * 12 11 10 14 14 C 1.39724 * 119.99634 * 354.02404 * 12 11 10 15 15 N 1.31023 * 120.00322 * 6.18001 * 14 12 11 16 16 Si 1.86806 * 119.99965 * 186.16999 * 14 12 11 17 17 H 1.48495 * 109.46780 * 90.00519 * 16 14 12 18 18 H 1.48498 * 109.47161 * 210.00700 * 16 14 12 19 19 H 1.48504 * 109.46892 * 330.00511 * 16 14 12 20 20 C 1.37697 * 114.27151 * 359.97438 * 11 10 9 21 21 S 1.70993 * 108.84072 * 359.73615 * 20 11 10 22 22 C 1.47903 * 111.00129 * 169.99820 * 3 2 1 23 23 H 1.09000 * 109.46720 * 300.00278 * 1 2 3 24 24 H 1.09000 * 109.46971 * 59.99489 * 1 2 3 25 25 H 1.09000 * 109.47435 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46816 * 240.00264 * 2 1 3 27 27 H 1.08994 * 109.47164 * 120.00146 * 2 1 3 28 28 H 1.09005 * 110.66442 * 318.71387 * 4 3 2 29 29 H 1.08998 * 110.66480 * 81.83971 * 4 3 2 30 30 H 1.09001 * 110.72274 * 279.04707 * 5 4 3 31 31 H 1.09007 * 110.72450 * 155.77170 * 5 4 3 32 32 H 1.09003 * 109.47368 * 52.15144 * 8 6 5 33 33 H 1.09000 * 109.47125 * 172.14719 * 8 6 5 34 34 H 0.96994 * 120.00147 * 179.97438 * 15 14 12 35 35 H 1.08005 * 125.58047 * 179.97438 * 20 11 10 36 36 H 1.09005 * 109.91288 * 26.49174 * 22 3 2 37 37 H 1.08995 * 109.92019 * 265.20466 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8063 2.0251 -1.3232 5 6 2.8089 3.2063 -1.3114 6 6 4.0330 2.6134 -0.5768 7 1 4.7725 2.2622 -1.2964 8 6 4.6532 3.6573 0.3541 9 6 5.2677 4.7610 -0.4675 10 7 4.6540 5.8270 -0.8493 11 6 5.3724 6.6911 -1.5728 12 6 4.8434 7.9035 -2.0652 13 1 5.4892 8.6123 -2.5620 14 6 3.4839 8.1865 -1.9101 15 7 2.7245 7.3861 -1.2036 16 14 2.7491 9.7064 -2.7100 17 1 2.2681 9.3650 -4.0727 18 1 1.6108 10.1953 -1.8912 19 1 3.7844 10.7671 -2.8017 20 6 6.6728 6.2977 -1.7969 21 16 6.9313 4.7872 -1.0383 22 6 3.4784 1.4314 0.2398 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.0405 1.3297 -2.1292 29 1 0.7831 2.3898 -1.4135 30 1 2.4007 4.0531 -0.7597 31 1 3.0731 3.4981 -2.3279 32 1 3.8801 4.0728 1.0005 33 1 5.4236 3.1872 0.9652 34 1 1.7808 7.5828 -1.0956 35 1 7.4101 6.8541 -2.3567 36 1 3.9392 0.5014 -0.0931 37 1 3.6756 1.5877 1.3003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260800635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:53 Heat of formation + Delta-G solvation = 11.239201 kcal Electronic energy + Delta-G solvation = -18059.303683 eV Core-core repulsion = 15347.725810 eV Total energy + Delta-G solvation = -2711.577873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.34159 -39.45311 -35.72768 -34.82106 -32.29392 -30.38518 -29.98412 -27.67509 -27.06372 -23.78723 -23.32031 -21.64114 -21.14643 -20.46299 -19.46679 -17.19949 -16.97503 -16.91631 -16.38726 -15.61491 -15.33720 -15.10932 -14.79749 -14.24375 -14.09369 -13.91876 -13.54736 -13.42081 -13.27609 -12.95431 -12.70943 -12.58902 -12.34200 -12.24816 -12.18559 -11.90633 -11.73358 -11.67180 -11.54979 -11.44612 -11.12072 -9.83971 -9.82321 -9.31996 -9.21881 -8.45393 -6.38066 0.45337 1.15702 1.36836 1.39956 1.50648 1.78977 2.23238 2.39194 3.09082 3.45287 3.53279 3.78213 3.80815 4.06145 4.23911 4.36090 4.41248 4.48676 4.63534 4.64031 4.69437 4.76196 4.92172 4.97168 5.02106 5.05122 5.10826 5.14243 5.14884 5.28235 5.36332 5.40435 5.45052 5.56541 5.98218 6.17232 6.21118 6.56140 6.89503 7.72305 8.42959 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.005905 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.559256 B = 4740.351050 C = 6023.651487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.040 3.960 3 N -0.530 5.530 4 C 0.046 3.954 5 C -0.107 4.107 6 C -0.082 4.082 7 H 0.073 0.927 8 C -0.019 4.019 9 C 0.070 3.930 10 N -0.430 5.430 11 C 0.198 3.802 12 C -0.475 4.475 13 H 0.078 0.922 14 C 0.032 3.968 15 N -0.774 5.774 16 Si 0.986 3.014 17 H -0.264 1.264 18 H -0.265 1.265 19 H -0.260 1.260 20 C -0.494 4.494 21 S 0.000 6.000 22 C 0.050 3.950 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.280 0.720 35 H 0.131 0.869 36 H 0.063 0.937 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 -13.375 2.638 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 N -0.255 5.255 4 C -0.081 4.081 5 C -0.146 4.146 6 C -0.103 4.103 7 H 0.092 0.908 8 C -0.060 4.060 9 C -0.214 4.214 10 N -0.144 5.144 11 C 0.076 3.924 12 C -0.509 4.509 13 H 0.096 0.904 14 C -0.188 4.188 15 N -0.397 5.397 16 Si 0.806 3.194 17 H -0.189 1.189 18 H -0.189 1.189 19 H -0.184 1.184 20 C -0.632 4.632 21 S 0.248 5.752 22 C -0.077 4.077 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.081 0.919 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.225 -13.674 3.357 14.700 hybrid contribution 0.137 1.579 -1.651 2.288 sum -4.088 -12.095 1.706 12.881 Atomic orbital electron populations 1.21718 0.94352 1.02156 1.01868 1.22329 0.96835 0.88239 1.01374 1.64778 1.14365 1.17687 1.28719 1.23140 0.99536 0.95114 0.90344 1.22327 0.95407 0.97713 0.99109 1.21896 0.96907 0.94579 0.96887 0.90824 1.20334 0.99841 0.90495 0.95361 1.28641 0.92036 0.98501 1.02245 1.67388 1.33823 1.01654 1.11583 1.18442 0.87913 0.94241 0.91802 1.19275 0.94928 1.01899 1.34766 0.90412 1.26815 0.97049 1.00787 0.94160 1.70183 1.06626 1.35044 1.27870 0.85158 0.78231 0.77294 0.78699 1.18869 1.18904 1.18408 1.25274 1.02664 1.06407 1.28866 1.82181 1.17750 1.20492 1.54784 1.22870 0.87421 0.96421 1.01031 0.92597 0.93526 0.90686 0.94348 0.89708 0.93259 0.90492 0.92277 0.94174 0.90074 0.87759 0.90959 0.85154 0.91920 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 10.00 71.98 0.72 -1.80 16 2 C 0.04 0.77 5.43 86.30 0.47 1.23 16 3 N -0.53 -13.31 5.24 -883.04 -4.63 -17.94 16 4 C 0.05 1.29 5.91 86.65 0.51 1.80 16 5 C -0.11 -3.78 6.19 31.79 0.20 -3.58 16 6 C -0.08 -2.49 2.99 -9.92 -0.03 -2.52 16 7 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 8 C -0.02 -0.64 4.98 29.85 0.15 -0.49 16 9 C 0.07 3.16 6.41 88.55 0.57 3.73 16 10 N -0.43 -23.41 8.48 -180.35 -1.53 -24.94 16 11 C 0.20 11.49 6.46 39.45 0.25 11.75 16 12 C -0.47 -27.40 9.23 23.35 0.22 -27.19 16 13 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 14 C 0.03 1.69 5.49 85.17 0.47 2.16 16 15 N -0.77 -42.24 11.72 21.80 0.26 -41.98 16 16 Si 0.99 39.97 29.56 68.60 2.03 41.99 16 17 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 18 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 C -0.49 -26.43 10.98 67.69 0.74 -25.69 16 21 S 0.00 -0.02 23.16 -56.49 -1.31 -1.33 16 22 C 0.05 1.19 6.32 86.45 0.55 1.74 16 23 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 0.88 7.37 -2.39 -0.02 0.86 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.04 0.70 7.83 -2.39 -0.02 0.68 16 27 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 28 H 0.05 1.25 7.81 -2.38 -0.02 1.23 16 29 H 0.08 2.14 7.80 -2.39 -0.02 2.12 16 30 H 0.06 2.49 7.79 -2.39 -0.02 2.48 16 31 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.08 2.95 8.04 -2.39 -0.02 2.93 16 33 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 35 H 0.13 6.83 8.06 -2.91 -0.02 6.80 16 36 H 0.06 1.25 7.77 -2.38 -0.02 1.23 16 37 H 0.09 1.99 7.68 -2.39 -0.02 1.98 16 Total: -1.00 -64.60 314.97 0.67 -63.94 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 1.04 Total: 19.13 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 4.81 Total: -38.86 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -5.90 Total: -84.87 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 41.99 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.31 Total: -1.33 kcal Total: -64.60 0.67 -63.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260800635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.176 kcal (2) G-P(sol) polarization free energy of solvation -64.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds