Wall clock time and date at job start Mon Mar 30 2020 07:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46843 * 110.99954 * 2 1 4 4 C 1.53032 * 109.52614 * 174.15960 * 3 2 1 5 5 C 1.53128 * 109.30904 * 59.15675 * 4 3 2 6 6 C 1.53118 * 109.16071 * 302.40965 * 5 4 3 7 7 H 1.09001 * 109.50331 * 297.63581 * 6 5 4 8 8 C 1.50701 * 109.50157 * 177.55283 * 6 5 4 9 9 N 1.29025 * 124.91672 * 300.04991 * 8 6 5 10 10 C 1.31781 * 117.12145 * 180.02562 * 9 8 6 11 11 C 1.33644 * 114.50150 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.03552 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47148 * 90.02156 * 12 11 10 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00083 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 S 1.70980 * 124.91147 * 120.36936 * 8 6 5 22 22 C 1.46850 * 111.00021 * 235.79217 * 2 1 3 23 23 H 1.08998 * 109.47299 * 184.20952 * 1 2 3 24 24 H 1.08997 * 109.47491 * 304.20798 * 1 2 3 25 25 H 1.09005 * 109.47111 * 64.21183 * 1 2 3 26 26 H 1.09001 * 109.46831 * 294.17661 * 3 2 1 27 27 H 1.09008 * 109.46256 * 54.14218 * 3 2 1 28 28 H 1.09003 * 109.51008 * 179.12058 * 4 3 2 29 29 H 1.09002 * 109.50429 * 299.20344 * 4 3 2 30 30 H 1.08998 * 109.55460 * 182.48355 * 5 4 3 31 31 H 1.09005 * 109.48685 * 62.29130 * 5 4 3 32 32 H 1.08005 * 122.74844 * 180.02562 * 10 9 8 33 33 H 1.08994 * 109.47275 * 330.02379 * 12 11 10 34 34 H 1.08998 * 109.47145 * 210.02177 * 12 11 10 35 35 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 36 36 H 1.08997 * 109.45998 * 65.82043 * 22 2 1 37 37 H 1.09001 * 109.45224 * 305.85245 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1196 0.5366 -1.0138 6 6 3.5181 -0.8715 -1.0209 7 1 3.7813 -1.3842 -0.0957 8 6 4.0598 -1.6440 -2.1960 9 7 3.9191 -1.3027 -3.4323 10 6 4.4565 -2.0938 -4.3389 11 6 5.0852 -3.1622 -3.8394 12 6 5.7876 -4.2307 -4.6370 13 6 7.2307 -3.8437 -4.8336 14 1 7.6022 -2.9169 -4.4219 15 6 8.0771 -4.6732 -5.5382 16 7 7.6249 -5.8020 -6.0392 17 14 9.8661 -4.1939 -5.7814 18 1 10.5585 -5.2473 -6.5663 19 1 9.9377 -2.9034 -6.5127 20 1 10.5243 -4.0503 -4.4580 21 16 4.9431 -3.1036 -2.0842 22 6 1.9953 -0.7707 -1.1338 23 1 -0.3634 -1.0249 0.0754 24 1 -0.3634 0.5777 0.8498 25 1 -0.3633 0.4471 -0.9254 26 1 1.7325 1.8609 -0.9375 27 1 1.5633 1.9257 0.8330 28 1 3.9099 2.3513 0.1311 29 1 3.7813 0.8574 1.0909 30 1 5.2004 0.4705 -0.8895 31 1 3.8900 1.0355 -1.9554 32 1 4.3941 -1.8951 -5.3986 33 1 5.3042 -4.3361 -5.6081 34 1 5.7354 -5.1780 -4.1004 35 1 6.6959 -6.0511 -5.9126 36 1 1.7324 -0.2708 -2.0660 37 1 1.5634 -1.7715 -1.1241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260805544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:16 Heat of formation + Delta-G solvation = 22.024960 kcal Electronic energy + Delta-G solvation = -17646.268219 eV Core-core repulsion = 14935.158052 eV Total energy + Delta-G solvation = -2711.110167 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.68835 -38.46975 -34.36826 -33.60558 -31.87155 -30.24795 -26.95833 -26.49372 -24.70622 -23.01020 -22.84997 -22.11529 -20.19822 -18.28066 -17.56869 -16.77054 -15.87671 -15.24621 -14.92076 -14.58231 -14.35978 -13.89783 -13.70550 -13.60948 -13.19927 -12.92413 -12.58682 -12.39812 -12.14063 -11.97285 -11.71443 -11.38287 -10.89733 -10.88798 -10.81317 -10.54785 -10.52862 -10.37030 -10.12587 -9.18534 -9.04282 -8.55950 -8.50228 -8.46959 -7.95519 -6.49440 -4.22698 1.38040 1.93669 2.41454 3.38390 3.40520 3.43999 3.59606 3.75228 4.45919 4.48002 4.72821 4.83377 4.89613 5.00236 5.19617 5.26424 5.27920 5.36309 5.39715 5.51276 5.65527 5.65913 5.74787 5.79748 5.87529 5.96374 6.06993 6.12789 6.18493 6.32515 6.81689 6.87363 6.90134 6.97803 7.12982 7.92653 8.27199 8.32656 8.69990 9.48010 10.89224 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040751 B = 0.004057 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.942503 B = 6899.634174 C = 7222.762208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.054 3.946 4 C -0.116 4.116 5 C -0.109 4.109 6 C 0.006 3.994 7 H 0.091 0.909 8 C 0.008 3.992 9 N -0.461 5.461 10 C -0.010 4.010 11 C -0.131 4.131 12 C 0.070 3.930 13 C -0.597 4.597 14 H 0.052 0.948 15 C 0.020 3.980 16 N -0.906 5.906 17 Si 1.071 2.929 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.286 1.286 21 S 0.097 5.903 22 C 0.070 3.930 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.025 0.975 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.035 0.965 34 H 0.025 0.975 35 H 0.269 0.731 36 H 0.046 0.954 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.173 11.589 12.261 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.074 4.074 4 C -0.154 4.154 5 C -0.148 4.148 6 C -0.016 4.016 7 H 0.109 0.891 8 C -0.271 4.271 9 N -0.174 5.174 10 C -0.158 4.158 11 C -0.252 4.252 12 C 0.031 3.969 13 C -0.636 4.636 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.542 5.542 17 Si 0.899 3.101 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.212 1.212 21 S 0.351 5.649 22 C -0.059 4.059 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.185 0.815 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.570 10.722 12.690 19.172 hybrid contribution -1.742 1.047 -1.084 2.304 sum -11.312 11.769 11.606 20.029 Atomic orbital electron populations 1.22334 0.87188 1.02315 1.00365 1.61902 1.07595 1.13788 1.43634 1.22121 0.95791 0.89102 1.00391 1.21598 0.94263 1.00246 0.99258 1.21600 1.00143 0.93954 0.99105 1.19625 0.94235 0.95002 0.92740 0.89060 1.26482 1.05255 0.99451 0.95868 1.66065 1.20467 1.31180 0.99737 1.21499 1.01918 0.92485 0.99922 1.26569 1.01433 1.02782 0.94449 1.18027 0.95374 0.90290 0.93247 1.21877 0.93409 1.08934 1.39331 0.92938 1.25912 1.05842 0.93562 0.93079 1.70806 1.18215 1.22281 1.42893 0.83503 0.74224 0.75780 0.76632 1.20563 1.21254 1.21242 1.83846 1.51221 1.22546 1.07271 1.22036 0.93698 0.98439 0.91747 0.91305 0.91394 0.95677 0.94791 0.90842 0.91235 0.90976 0.91453 0.91109 0.81458 0.94726 0.95736 0.92049 0.93589 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.59 60.07 0.58 0.81 16 2 N -0.54 -5.96 4.91 -242.96 -1.19 -7.16 16 3 C 0.05 0.53 5.46 -3.84 -0.02 0.50 16 4 C -0.12 -1.13 6.09 -26.65 -0.16 -1.30 16 5 C -0.11 -1.35 5.26 -26.60 -0.14 -1.50 16 6 C 0.01 0.09 2.78 -91.69 -0.26 -0.17 16 7 H 0.09 1.18 8.13 -51.93 -0.42 0.76 16 8 C 0.01 0.13 5.91 -13.46 -0.08 0.05 16 9 N -0.46 -8.79 10.53 -11.86 -0.12 -8.92 16 10 C -0.01 -0.21 11.25 -19.18 -0.22 -0.43 16 11 C -0.13 -2.89 5.79 -35.92 -0.21 -3.09 16 12 C 0.07 1.77 4.82 -29.03 -0.14 1.63 16 13 C -0.60 -16.68 9.09 -34.44 -0.31 -16.99 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 16 N -0.91 -26.95 13.65 55.43 0.76 -26.20 16 17 Si 1.07 24.91 29.90 -169.99 -5.08 19.83 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 S 0.10 1.80 23.17 -107.50 -2.49 -0.69 16 22 C 0.07 0.89 4.72 -3.83 -0.02 0.87 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.60 8.09 -51.92 -0.42 0.18 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.17 3.28 8.06 -52.48 -0.42 2.86 16 33 H 0.03 0.89 8.01 -51.93 -0.42 0.48 16 34 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 35 H 0.27 7.90 7.22 -40.82 -0.29 7.61 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -29.95 316.32 -10.26 -40.21 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.82 Total: -2.71 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -1.07 Total: -19.13 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.56 Total: -42.27 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.83 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.49 Total: -0.69 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.95 -10.26 -40.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260805544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.233 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds