Wall clock time and date at job start Mon Mar 30 2020 07:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46843 * 110.99954 * 2 1 4 4 C 1.53032 * 109.52614 * 174.15960 * 3 2 1 5 5 C 1.53128 * 109.30904 * 59.15675 * 4 3 2 6 6 C 1.53118 * 109.16071 * 302.40965 * 5 4 3 7 7 H 1.09001 * 109.50331 * 297.63581 * 6 5 4 8 8 C 1.50701 * 109.50157 * 177.55283 * 6 5 4 9 9 N 1.29025 * 124.91672 * 300.04991 * 8 6 5 10 10 C 1.31781 * 117.12145 * 180.02562 * 9 8 6 11 11 C 1.33644 * 114.50150 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.03552 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47148 * 90.02156 * 12 11 10 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00083 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 S 1.70980 * 124.91147 * 120.36936 * 8 6 5 22 22 C 1.46850 * 111.00021 * 235.79217 * 2 1 3 23 23 H 1.08998 * 109.47299 * 184.20952 * 1 2 3 24 24 H 1.08997 * 109.47491 * 304.20798 * 1 2 3 25 25 H 1.09005 * 109.47111 * 64.21183 * 1 2 3 26 26 H 1.09001 * 109.46831 * 294.17661 * 3 2 1 27 27 H 1.09008 * 109.46256 * 54.14218 * 3 2 1 28 28 H 1.09003 * 109.51008 * 179.12058 * 4 3 2 29 29 H 1.09002 * 109.50429 * 299.20344 * 4 3 2 30 30 H 1.08998 * 109.55460 * 182.48355 * 5 4 3 31 31 H 1.09005 * 109.48685 * 62.29130 * 5 4 3 32 32 H 1.08005 * 122.74844 * 180.02562 * 10 9 8 33 33 H 1.08994 * 109.47275 * 330.02379 * 12 11 10 34 34 H 1.08998 * 109.47145 * 210.02177 * 12 11 10 35 35 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 36 36 H 1.08997 * 109.45998 * 65.82043 * 22 2 1 37 37 H 1.09001 * 109.45224 * 305.85245 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1196 0.5366 -1.0138 6 6 3.5181 -0.8715 -1.0209 7 1 3.7813 -1.3842 -0.0957 8 6 4.0598 -1.6440 -2.1960 9 7 3.9191 -1.3027 -3.4323 10 6 4.4565 -2.0938 -4.3389 11 6 5.0852 -3.1622 -3.8394 12 6 5.7876 -4.2307 -4.6370 13 6 7.2307 -3.8437 -4.8336 14 1 7.6022 -2.9169 -4.4219 15 6 8.0771 -4.6732 -5.5382 16 7 7.6249 -5.8020 -6.0392 17 14 9.8661 -4.1939 -5.7814 18 1 10.5585 -5.2473 -6.5663 19 1 9.9377 -2.9034 -6.5127 20 1 10.5243 -4.0503 -4.4580 21 16 4.9431 -3.1036 -2.0842 22 6 1.9953 -0.7707 -1.1338 23 1 -0.3634 -1.0249 0.0754 24 1 -0.3634 0.5777 0.8498 25 1 -0.3633 0.4471 -0.9254 26 1 1.7325 1.8609 -0.9375 27 1 1.5633 1.9257 0.8330 28 1 3.9099 2.3513 0.1311 29 1 3.7813 0.8574 1.0909 30 1 5.2004 0.4705 -0.8895 31 1 3.8900 1.0355 -1.9554 32 1 4.3941 -1.8951 -5.3986 33 1 5.3042 -4.3361 -5.6081 34 1 5.7354 -5.1780 -4.1004 35 1 6.6959 -6.0511 -5.9126 36 1 1.7324 -0.2708 -2.0660 37 1 1.5634 -1.7715 -1.1241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260805544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:15 Heat of formation + Delta-G solvation = 3.740201 kcal Electronic energy + Delta-G solvation = -17647.061106 eV Core-core repulsion = 14935.158052 eV Total energy + Delta-G solvation = -2711.903054 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00432 -39.63164 -36.14750 -34.89461 -33.11902 -31.81366 -28.28031 -27.64836 -26.32315 -24.71674 -23.83785 -23.44815 -21.29416 -19.70695 -19.20117 -18.70748 -16.88854 -16.25965 -16.23339 -15.69369 -15.66755 -15.49489 -15.21235 -15.07221 -14.36095 -14.21368 -14.04222 -13.82057 -13.47938 -13.19425 -12.70075 -12.64689 -12.57602 -12.35185 -12.15250 -11.94584 -11.74478 -11.64121 -11.50010 -11.14670 -10.66674 -10.51470 -10.12867 -9.65402 -9.35625 -8.73719 -6.49364 -0.18549 0.39049 0.84048 1.51337 1.58595 1.78932 1.84914 2.52500 2.83573 3.08049 3.24054 3.76270 3.84064 3.88502 4.14182 4.23369 4.27773 4.37397 4.43971 4.52682 4.53671 4.57711 4.70433 4.79040 4.86649 4.90173 4.95595 5.01513 5.07597 5.14169 5.16726 5.26160 5.42014 5.78628 6.00419 6.04824 6.10453 6.44790 6.74925 7.29867 8.64123 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040751 B = 0.004057 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.942503 B = 6899.634174 C = 7222.762208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.051 3.949 4 C -0.109 4.109 5 C -0.107 4.107 6 C 0.004 3.996 7 H 0.105 0.895 8 C 0.034 3.966 9 N -0.476 5.476 10 C -0.001 4.001 11 C -0.179 4.179 12 C 0.079 3.921 13 C -0.609 4.609 14 H 0.045 0.955 15 C -0.028 4.028 16 N -0.930 5.930 17 Si 1.117 2.883 18 H -0.279 1.279 19 H -0.270 1.270 20 H -0.269 1.269 21 S 0.122 5.878 22 C 0.077 3.923 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.023 0.977 26 H 0.028 0.972 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.170 0.830 33 H 0.019 0.981 34 H 0.008 0.992 35 H 0.258 0.742 36 H 0.030 0.970 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.348 13.468 14.264 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.076 4.076 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.018 4.018 7 H 0.123 0.877 8 C -0.244 4.244 9 N -0.190 5.190 10 C -0.149 4.149 11 C -0.301 4.301 12 C 0.040 3.960 13 C -0.647 4.647 14 H 0.064 0.936 15 C -0.226 4.226 16 N -0.566 5.566 17 Si 0.937 3.063 18 H -0.204 1.204 19 H -0.196 1.196 20 H -0.194 1.194 21 S 0.377 5.623 22 C -0.052 4.052 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.187 0.813 33 H 0.037 0.963 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.766 12.600 14.705 21.688 hybrid contribution -1.812 0.537 -1.605 2.479 sum -11.578 13.136 13.100 21.868 Atomic orbital electron populations 1.22414 0.85883 1.02915 1.01111 1.61940 1.08815 1.14373 1.42186 1.22220 0.95805 0.88547 1.01043 1.21581 0.94178 1.00825 0.98058 1.21590 1.00096 0.93165 0.99762 1.19870 0.95079 0.95478 0.91408 0.87690 1.27266 1.02536 0.98253 0.96391 1.66160 1.21457 1.31171 1.00194 1.21614 1.00783 0.91963 1.00551 1.26225 1.04034 1.03158 0.96634 1.17700 0.94648 0.90740 0.92947 1.22170 0.94986 1.08542 1.38976 0.93636 1.27387 1.09863 0.92986 0.92399 1.70923 1.17754 1.23507 1.44445 0.82940 0.69671 0.76106 0.77572 1.20431 1.19569 1.19400 1.83659 1.51149 1.23103 1.04353 1.21880 0.92781 0.98625 0.91961 0.91073 0.89464 0.95872 0.95392 0.88597 0.89376 0.90234 0.91732 0.92635 0.81279 0.96346 0.97353 0.93224 0.95212 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.59 127.69 1.22 1.60 16 2 N -0.55 -10.54 4.91 -922.59 -4.53 -15.07 16 3 C 0.05 0.84 5.46 86.32 0.47 1.31 16 4 C -0.11 -1.78 6.09 30.65 0.19 -1.59 16 5 C -0.11 -2.43 5.26 30.68 0.16 -2.27 16 6 C 0.00 0.10 2.78 -11.49 -0.03 0.07 16 7 H 0.10 2.43 8.13 -2.39 -0.02 2.41 16 8 C 0.03 1.14 5.91 88.52 0.52 1.66 16 9 N -0.48 -17.96 10.53 -191.44 -2.02 -19.97 16 10 C 0.00 -0.03 11.25 83.66 0.94 0.92 16 11 C -0.18 -8.04 5.79 24.64 0.14 -7.90 16 12 C 0.08 4.14 4.82 29.10 0.14 4.28 16 13 C -0.61 -34.69 9.09 25.60 0.23 -34.45 16 14 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 15 C -0.03 -1.59 5.46 84.65 0.46 -1.13 16 16 N -0.93 -56.49 13.65 21.45 0.29 -56.20 16 17 Si 1.12 49.83 29.90 68.60 2.05 51.88 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 S 0.12 4.47 23.17 -56.49 -1.31 3.16 16 22 C 0.08 1.83 4.72 86.32 0.41 2.24 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 25 H 0.02 0.36 8.14 -2.38 -0.02 0.34 16 26 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.10 1.19 8.09 -2.38 -0.02 1.17 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.17 6.80 8.06 -2.91 -0.02 6.77 16 33 H 0.02 1.00 8.01 -2.39 -0.02 0.98 16 34 H 0.01 0.45 8.01 -2.39 -0.02 0.43 16 35 H 0.26 15.77 7.22 -92.70 -0.67 15.10 16 36 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 1.73 8.12 -2.39 -0.02 1.71 16 Total: -1.00 -64.58 316.32 0.49 -64.10 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.13 Total: 7.35 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 4.86 Total: -35.26 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -6.25 Total: -91.24 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.05 Total: 51.88 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.31 Total: 3.16 kcal Total: -64.58 0.49 -64.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260805544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.837 kcal (2) G-P(sol) polarization free energy of solvation -64.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds