Wall clock time and date at job start Mon Mar 30 2020 07:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46845 * 111.00238 * 2 1 4 4 C 1.53041 * 109.52541 * 185.83972 * 3 2 1 5 5 C 1.53113 * 109.27707 * 300.82133 * 4 3 2 6 6 C 1.53126 * 109.16316 * 57.65475 * 5 4 3 7 7 C 1.46850 * 111.00089 * 124.20944 * 2 1 3 8 8 H 1.08993 * 109.46274 * 294.16448 * 7 2 1 9 9 C 1.53003 * 109.45792 * 54.14408 * 7 2 1 10 10 C 1.50700 * 109.46667 * 185.32309 * 9 7 2 11 11 N 1.28797 * 124.99219 * 84.40469 * 10 9 7 12 12 C 1.33647 * 116.05968 * 179.97438 * 11 10 9 13 13 C 1.41163 * 122.85863 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99460 * 186.06402 * 13 12 11 15 15 C 1.39716 * 120.00441 * 6.06482 * 13 12 11 16 16 N 1.31027 * 119.99725 * 353.78993 * 15 13 12 17 17 Si 1.86798 * 120.00324 * 173.78869 * 15 13 12 18 18 H 1.48493 * 109.47060 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47120 * 300.00061 * 17 15 13 20 20 H 1.48500 * 109.47086 * 60.00033 * 17 15 13 21 21 C 1.37692 * 114.27672 * 0.24143 * 12 11 10 22 22 S 1.70992 * 108.83867 * 359.62747 * 21 12 11 23 23 H 1.09006 * 109.46822 * 289.29617 * 1 2 3 24 24 H 1.08999 * 109.46849 * 49.28949 * 1 2 3 25 25 H 1.08998 * 109.47612 * 169.29348 * 1 2 3 26 26 H 1.09001 * 109.46314 * 305.85451 * 3 2 1 27 27 H 1.09003 * 109.46319 * 65.83757 * 3 2 1 28 28 H 1.09002 * 109.50271 * 60.76283 * 4 3 2 29 29 H 1.08995 * 109.50353 * 180.87982 * 4 3 2 30 30 H 1.09001 * 109.52590 * 177.55567 * 5 4 3 31 31 H 1.08998 * 109.52381 * 297.68539 * 5 4 3 32 32 H 1.08994 * 109.50245 * 182.40434 * 6 5 4 33 33 H 1.09002 * 109.50356 * 62.28232 * 6 5 4 34 34 H 1.09005 * 109.47224 * 65.32731 * 9 7 2 35 35 H 1.09003 * 109.47357 * 305.32204 * 9 7 2 36 36 H 0.96999 * 119.99678 * 180.02562 * 16 15 13 37 37 H 1.07999 * 125.58279 * 179.75859 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5369 1.0143 6 6 3.5181 -0.8716 1.0208 7 6 1.9952 -0.7708 1.1338 8 1 1.7327 -0.2708 2.0660 9 6 1.3890 -2.1755 1.1203 10 6 1.8260 -2.9229 2.3538 11 7 1.2522 -2.8487 3.5045 12 6 1.7897 -3.5906 4.4775 13 6 1.2768 -3.6174 5.7924 14 1 1.8034 -4.1557 6.5665 15 6 0.0878 -2.9477 6.0923 16 7 -0.4867 -2.1954 5.1864 17 14 -0.6827 -3.1248 7.7847 18 1 -1.9288 -2.3196 7.8480 19 1 -1.0022 -4.5530 8.0361 20 1 0.2709 -2.6420 8.8157 21 6 2.8900 -4.3220 4.0897 22 16 3.1941 -4.0256 2.4333 23 1 -0.3633 0.3396 0.9700 24 1 -0.3633 0.6703 -0.7790 25 1 -0.3634 -1.0097 -0.1909 26 1 1.5635 1.9257 -0.8330 27 1 1.7327 1.8607 0.9377 28 1 3.7814 0.8567 -1.0907 29 1 3.9099 2.3511 -0.1310 30 1 5.1998 0.4713 0.8905 31 1 3.8897 1.0360 1.9559 32 1 3.9099 -1.4303 1.8707 33 1 3.7813 -1.3837 0.0953 34 1 1.7285 -2.7093 0.2327 35 1 0.3016 -2.1019 1.1063 36 1 -1.3119 -1.7301 5.3947 37 1 3.4653 -4.9774 4.7267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260812906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:48 Heat of formation + Delta-G solvation = 26.817447 kcal Electronic energy + Delta-G solvation = -18391.639293 eV Core-core repulsion = 15680.736943 eV Total energy + Delta-G solvation = -2710.902349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.15430 -37.63773 -33.65852 -33.31005 -32.37540 -29.30761 -27.11767 -26.18205 -25.50282 -22.95618 -22.13775 -20.71206 -19.53466 -18.39220 -17.57845 -15.69023 -15.43218 -15.13708 -14.79627 -14.31159 -14.12391 -13.82775 -13.34819 -12.92279 -12.86679 -12.49974 -12.22045 -11.85367 -11.67195 -11.58567 -11.48185 -11.18825 -11.08137 -10.74660 -10.69329 -10.46780 -10.37419 -10.17212 -9.93148 -9.66142 -9.22409 -8.10502 -7.98357 -7.91869 -7.28796 -6.53579 -4.34267 2.31564 2.95553 3.07044 3.08868 3.11892 3.70654 4.01097 4.08351 4.32023 4.95071 5.03456 5.08970 5.28794 5.42899 5.49929 5.54758 5.63366 5.66668 5.75114 5.80016 5.90862 5.95890 6.07621 6.11029 6.14245 6.29384 6.34355 6.44718 6.50220 6.64803 6.89779 7.12623 7.26896 7.29481 7.33572 7.54231 8.20171 8.56366 8.89732 9.62619 10.34043 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.006100 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.113636 B = 4589.208243 C = 5262.740296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.056 3.944 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.115 4.115 7 C 0.097 3.903 8 H 0.050 0.950 9 C -0.026 4.026 10 C 0.062 3.938 11 N -0.397 5.397 12 C 0.226 3.774 13 C -0.434 4.434 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.752 5.752 17 Si 0.910 3.090 18 H -0.279 1.279 19 H -0.265 1.265 20 H -0.266 1.266 21 C -0.457 4.457 22 S -0.043 6.043 23 H 0.030 0.970 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.273 0.727 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.521 6.443 -9.053 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.264 5.264 3 C -0.072 4.072 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.013 4.013 8 H 0.068 0.932 9 C -0.068 4.068 10 C -0.222 4.222 11 N -0.110 5.110 12 C 0.104 3.896 13 C -0.468 4.468 14 H 0.101 0.899 15 C -0.149 4.149 16 N -0.376 5.376 17 Si 0.735 3.265 18 H -0.204 1.204 19 H -0.190 1.190 20 H -0.191 1.191 21 C -0.596 4.596 22 S 0.205 5.795 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.731 6.339 -10.079 12.216 hybrid contribution -0.974 0.178 2.598 2.780 sum 1.757 6.517 -7.481 10.076 Atomic orbital electron populations 1.22413 0.87540 1.02526 1.00257 1.61960 1.07527 1.13042 1.43834 1.22064 0.95588 0.89438 1.00078 1.21579 0.94556 0.99692 0.99443 1.21581 0.99692 0.96345 0.98264 1.21719 0.93906 0.96644 1.02994 1.21556 0.94862 0.93255 0.91601 0.93175 1.20126 1.01154 0.93140 0.92382 1.27630 0.96099 1.00842 0.97638 1.67365 1.26453 1.19214 0.97995 1.18008 0.89139 0.89265 0.93168 1.18908 1.05926 1.28810 0.93170 0.89943 1.25973 0.96897 0.93483 0.98582 1.70109 1.14874 1.19216 1.33353 0.86348 0.78662 0.79320 0.82218 1.20353 1.18988 1.19052 1.25079 1.13590 1.23559 0.97330 1.82645 1.37021 1.48399 1.11434 0.95152 0.92012 0.90843 0.91139 0.95107 0.91238 0.92038 0.91976 0.92411 0.90483 0.91300 0.90350 0.89640 0.91643 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.89 60.06 0.53 0.81 16 2 N -0.54 -7.80 4.75 -234.92 -1.11 -8.92 16 3 C 0.06 0.71 5.46 -3.83 -0.02 0.69 16 4 C -0.11 -1.34 6.09 -26.65 -0.16 -1.50 16 5 C -0.12 -1.62 6.00 -26.61 -0.16 -1.78 16 6 C -0.11 -1.81 5.16 -26.65 -0.14 -1.94 16 7 C 0.10 1.64 1.88 -67.72 -0.13 1.51 16 8 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 9 C -0.03 -0.48 5.05 -27.88 -0.14 -0.63 16 10 C 0.06 1.43 6.01 -13.55 -0.08 1.35 16 11 N -0.40 -10.71 8.49 -8.36 -0.07 -10.78 16 12 C 0.23 6.37 6.46 -86.17 -0.56 5.82 16 13 C -0.43 -12.12 9.23 -37.92 -0.35 -12.47 16 14 H 0.08 2.19 7.85 -52.49 -0.41 1.78 16 15 C 0.07 1.91 5.49 -17.34 -0.10 1.82 16 16 N -0.75 -20.38 11.72 55.54 0.65 -19.73 16 17 Si 0.91 19.32 29.56 -169.99 -5.03 14.30 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 C -0.46 -11.87 10.98 30.53 0.34 -11.53 16 22 S -0.04 -0.94 22.24 -107.50 -2.39 -3.34 16 23 H 0.03 0.45 8.12 -51.93 -0.42 0.02 16 24 H 0.06 0.69 7.97 -51.93 -0.41 0.28 16 25 H 0.07 0.98 6.50 -51.93 -0.34 0.64 16 26 H 0.07 0.77 8.01 -51.93 -0.42 0.35 16 27 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.39 6.60 -51.93 -0.34 1.04 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.59 6.16 -51.93 -0.32 1.27 16 36 H 0.27 6.76 8.30 -40.82 -0.34 6.43 16 37 H 0.14 3.38 8.06 -52.49 -0.42 2.96 16 LS Contribution 307.47 15.07 4.63 4.63 Total: -1.00 -29.33 307.47 -9.88 -39.22 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.60 Total: 2.48 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -0.96 Total: -17.86 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.54 Total: -39.43 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.30 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.39 Total: -3.34 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.33 -9.88 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260812906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.033 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds