Wall clock time and date at job start Mon Mar 30 2020 07:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46845 * 111.00238 * 2 1 4 4 C 1.53041 * 109.52541 * 185.83972 * 3 2 1 5 5 C 1.53113 * 109.27707 * 300.82133 * 4 3 2 6 6 C 1.53126 * 109.16316 * 57.65475 * 5 4 3 7 7 C 1.46850 * 111.00089 * 124.20944 * 2 1 3 8 8 H 1.08993 * 109.46274 * 294.16448 * 7 2 1 9 9 C 1.53003 * 109.45792 * 54.14408 * 7 2 1 10 10 C 1.50700 * 109.46667 * 185.32309 * 9 7 2 11 11 N 1.28797 * 124.99219 * 84.40469 * 10 9 7 12 12 C 1.33647 * 116.05968 * 179.97438 * 11 10 9 13 13 C 1.41163 * 122.85863 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99460 * 186.06402 * 13 12 11 15 15 C 1.39716 * 120.00441 * 6.06482 * 13 12 11 16 16 N 1.31027 * 119.99725 * 353.78993 * 15 13 12 17 17 Si 1.86798 * 120.00324 * 173.78869 * 15 13 12 18 18 H 1.48493 * 109.47060 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47120 * 300.00061 * 17 15 13 20 20 H 1.48500 * 109.47086 * 60.00033 * 17 15 13 21 21 C 1.37692 * 114.27672 * 0.24143 * 12 11 10 22 22 S 1.70992 * 108.83867 * 359.62747 * 21 12 11 23 23 H 1.09006 * 109.46822 * 289.29617 * 1 2 3 24 24 H 1.08999 * 109.46849 * 49.28949 * 1 2 3 25 25 H 1.08998 * 109.47612 * 169.29348 * 1 2 3 26 26 H 1.09001 * 109.46314 * 305.85451 * 3 2 1 27 27 H 1.09003 * 109.46319 * 65.83757 * 3 2 1 28 28 H 1.09002 * 109.50271 * 60.76283 * 4 3 2 29 29 H 1.08995 * 109.50353 * 180.87982 * 4 3 2 30 30 H 1.09001 * 109.52590 * 177.55567 * 5 4 3 31 31 H 1.08998 * 109.52381 * 297.68539 * 5 4 3 32 32 H 1.08994 * 109.50245 * 182.40434 * 6 5 4 33 33 H 1.09002 * 109.50356 * 62.28232 * 6 5 4 34 34 H 1.09005 * 109.47224 * 65.32731 * 9 7 2 35 35 H 1.09003 * 109.47357 * 305.32204 * 9 7 2 36 36 H 0.96999 * 119.99678 * 180.02562 * 16 15 13 37 37 H 1.07999 * 125.58279 * 179.75859 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5369 1.0143 6 6 3.5181 -0.8716 1.0208 7 6 1.9952 -0.7708 1.1338 8 1 1.7327 -0.2708 2.0660 9 6 1.3890 -2.1755 1.1203 10 6 1.8260 -2.9229 2.3538 11 7 1.2522 -2.8487 3.5045 12 6 1.7897 -3.5906 4.4775 13 6 1.2768 -3.6174 5.7924 14 1 1.8034 -4.1557 6.5665 15 6 0.0878 -2.9477 6.0923 16 7 -0.4867 -2.1954 5.1864 17 14 -0.6827 -3.1248 7.7847 18 1 -1.9288 -2.3196 7.8480 19 1 -1.0022 -4.5530 8.0361 20 1 0.2709 -2.6420 8.8157 21 6 2.8900 -4.3220 4.0897 22 16 3.1941 -4.0256 2.4333 23 1 -0.3633 0.3396 0.9700 24 1 -0.3633 0.6703 -0.7790 25 1 -0.3634 -1.0097 -0.1909 26 1 1.5635 1.9257 -0.8330 27 1 1.7327 1.8607 0.9377 28 1 3.7814 0.8567 -1.0907 29 1 3.9099 2.3511 -0.1310 30 1 5.1998 0.4713 0.8905 31 1 3.8897 1.0360 1.9559 32 1 3.9099 -1.4303 1.8707 33 1 3.7813 -1.3837 0.0953 34 1 1.7285 -2.7093 0.2327 35 1 0.3016 -2.1019 1.1063 36 1 -1.3119 -1.7301 5.3947 37 1 3.4653 -4.9774 4.7267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260812906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:47 Heat of formation + Delta-G solvation = 8.645901 kcal Electronic energy + Delta-G solvation = -18392.427270 eV Core-core repulsion = 15680.736943 eV Total energy + Delta-G solvation = -2711.690327 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.47283 -39.46945 -35.40640 -34.54262 -33.91349 -31.03154 -28.59091 -27.59670 -27.30743 -24.30662 -23.53259 -22.24134 -20.81980 -20.18498 -19.51517 -17.22716 -17.00419 -16.82708 -16.23143 -15.60618 -15.43157 -15.08488 -14.97930 -14.63044 -14.17832 -14.03554 -13.57259 -13.46709 -13.23197 -13.12802 -12.82741 -12.63024 -12.56273 -12.47641 -12.27191 -11.92726 -11.61222 -11.58051 -11.33360 -11.22659 -11.04660 -9.90110 -9.84176 -9.32515 -9.23603 -8.49145 -6.41164 0.39774 1.10623 1.34356 1.39446 1.47378 1.75672 2.20831 2.33740 2.90219 3.42551 3.65014 3.86299 3.94911 4.00578 4.16230 4.32086 4.42099 4.53361 4.57027 4.63811 4.74722 4.80205 4.90422 4.91487 4.98597 5.08628 5.08649 5.11591 5.12665 5.24956 5.27837 5.35174 5.48912 5.52225 6.08040 6.13794 6.17635 6.52810 6.85535 7.67458 8.39960 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.006100 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.113636 B = 4589.208243 C = 5262.740296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.533 5.533 3 C 0.051 3.949 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.113 4.113 7 C 0.108 3.892 8 H 0.009 0.991 9 C -0.024 4.024 10 C 0.067 3.933 11 N -0.441 5.441 12 C 0.196 3.804 13 C -0.475 4.475 14 H 0.081 0.919 15 C 0.028 3.972 16 N -0.784 5.784 17 Si 0.989 3.011 18 H -0.266 1.266 19 H -0.260 1.260 20 H -0.259 1.259 21 C -0.490 4.490 22 S 0.023 5.977 23 H 0.009 0.991 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.017 0.983 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.280 0.720 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 7.295 -10.550 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.258 5.258 3 C -0.076 4.076 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.151 4.151 7 C -0.002 4.002 8 H 0.027 0.973 9 C -0.066 4.066 10 C -0.217 4.217 11 N -0.156 5.156 12 C 0.074 3.926 13 C -0.509 4.509 14 H 0.099 0.901 15 C -0.191 4.191 16 N -0.407 5.407 17 Si 0.809 3.191 18 H -0.190 1.190 19 H -0.184 1.184 20 H -0.184 1.184 21 C -0.628 4.628 22 S 0.272 5.728 23 H 0.028 0.972 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.035 0.965 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.871 7.185 -11.605 13.948 hybrid contribution -0.948 -0.078 2.946 3.096 sum 1.923 7.107 -8.659 11.366 Atomic orbital electron populations 1.22481 0.86996 1.03221 1.00139 1.62030 1.08044 1.14072 1.41637 1.22239 0.96653 0.88281 1.00469 1.21570 0.93466 1.00800 0.98740 1.21588 1.00800 0.94888 0.98564 1.21677 0.92860 0.98196 1.02347 1.21322 0.95815 0.92199 0.90906 0.97344 1.20288 1.01167 0.93987 0.91124 1.28399 0.95515 0.99914 0.97886 1.67376 1.28365 1.20731 0.99086 1.18436 0.90037 0.90040 0.94112 1.19271 1.07563 1.30406 0.93618 0.90075 1.26903 0.96696 0.92475 1.03013 1.70204 1.15313 1.19626 1.35578 0.85163 0.77907 0.79536 0.76486 1.18971 1.18435 1.18369 1.25368 1.13545 1.23769 1.00158 1.82169 1.35699 1.46978 1.07980 0.97216 0.89082 0.90891 0.88479 0.96496 0.90180 0.89683 0.90220 0.94030 0.93275 0.89849 0.87838 0.89941 0.91016 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 8.89 127.69 1.14 1.64 16 2 N -0.53 -14.55 4.75 -897.17 -4.26 -18.81 16 3 C 0.05 1.18 5.46 86.33 0.47 1.65 16 4 C -0.11 -2.19 6.09 30.65 0.19 -2.01 16 5 C -0.12 -3.05 6.00 30.67 0.18 -2.87 16 6 C -0.11 -3.45 5.16 30.65 0.16 -3.29 16 7 C 0.11 3.64 1.88 44.94 0.08 3.72 16 8 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 9 C -0.02 -0.88 5.05 29.85 0.15 -0.73 16 10 C 0.07 3.11 6.01 88.55 0.53 3.65 16 11 N -0.44 -24.68 8.49 -180.35 -1.53 -26.21 16 12 C 0.20 11.49 6.46 39.46 0.25 11.75 16 13 C -0.47 -27.56 9.23 23.35 0.22 -27.34 16 14 H 0.08 4.51 7.85 -2.91 -0.02 4.48 16 15 C 0.03 1.52 5.49 85.17 0.47 1.99 16 16 N -0.78 -43.70 11.72 21.79 0.26 -43.44 16 17 Si 0.99 40.17 29.56 68.60 2.03 42.20 16 18 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 21 C -0.49 -26.18 10.98 67.69 0.74 -25.44 16 22 S 0.02 1.00 22.24 -56.49 -1.26 -0.25 16 23 H 0.01 0.28 8.12 -2.38 -0.02 0.26 16 24 H 0.09 1.80 7.97 -2.39 -0.02 1.78 16 25 H 0.07 1.86 6.50 -2.39 -0.02 1.85 16 26 H 0.10 1.76 8.01 -2.39 -0.02 1.74 16 27 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.76 6.60 -2.39 -0.02 1.75 16 33 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 35 H 0.08 3.09 6.16 -2.39 -0.01 3.07 16 36 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 37 H 0.13 6.97 8.06 -2.91 -0.02 6.95 16 Total: -1.00 -65.86 307.47 0.87 -65.00 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.05 Total: 18.81 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 4.58 Total: -37.29 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -5.53 Total: -88.46 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -1.26 Total: -0.25 kcal Total: -65.86 0.87 -65.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260812906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.642 kcal (2) G-P(sol) polarization free energy of solvation -65.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds