Wall clock time and date at job start Mon Mar 30 2020 07:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46849 * 111.00074 * 2 1 4 4 C 1.53036 * 109.52418 * 174.16132 * 3 2 1 5 5 C 1.53115 * 109.27573 * 59.18351 * 4 3 2 6 6 C 1.53097 * 109.15554 * 302.34136 * 5 4 3 7 7 C 1.46850 * 111.00031 * 235.79480 * 2 1 3 8 8 H 1.09001 * 109.46380 * 65.81786 * 7 2 1 9 9 C 1.52998 * 109.46044 * 305.84305 * 7 2 1 10 10 C 1.50699 * 109.47194 * 175.99241 * 9 7 2 11 11 N 1.28795 * 124.99278 * 95.08061 * 10 9 7 12 12 C 1.33650 * 116.06102 * 179.78736 * 11 10 9 13 13 C 1.41153 * 122.86793 * 180.27619 * 12 11 10 14 14 H 1.07995 * 120.00693 * 185.54930 * 13 12 11 15 15 C 1.39730 * 119.99498 * 5.54389 * 13 12 11 16 16 N 1.31015 * 119.99829 * 354.68849 * 15 13 12 17 17 Si 1.86795 * 119.99806 * 174.68531 * 15 13 12 18 18 H 1.48500 * 109.47161 * 90.00055 * 17 15 13 19 19 H 1.48498 * 109.47240 * 210.00216 * 17 15 13 20 20 H 1.48509 * 109.47118 * 330.00432 * 17 15 13 21 21 C 1.37705 * 114.27422 * 0.49826 * 12 11 10 22 22 S 1.71001 * 108.83560 * 359.74068 * 21 12 11 23 23 H 1.09003 * 109.46937 * 190.89108 * 1 2 3 24 24 H 1.08999 * 109.46917 * 310.89035 * 1 2 3 25 25 H 1.08997 * 109.47039 * 70.89085 * 1 2 3 26 26 H 1.08997 * 109.46335 * 294.18370 * 3 2 1 27 27 H 1.09007 * 109.45651 * 54.15685 * 3 2 1 28 28 H 1.08995 * 109.50026 * 179.12216 * 4 3 2 29 29 H 1.09002 * 109.50350 * 299.20167 * 4 3 2 30 30 H 1.08994 * 109.52939 * 62.24976 * 5 4 3 31 31 H 1.09003 * 109.52253 * 182.37367 * 5 4 3 32 32 H 1.08997 * 109.50717 * 297.71382 * 6 5 4 33 33 H 1.08997 * 109.48862 * 177.60347 * 6 5 4 34 34 H 1.09004 * 109.47172 * 295.99389 * 9 7 2 35 35 H 1.09003 * 109.47278 * 55.99024 * 9 7 2 36 36 H 0.97010 * 119.99557 * 180.02562 * 16 15 13 37 37 H 1.07996 * 125.58322 * 179.73722 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1187 0.5371 -1.0145 6 6 3.5181 -0.8711 -1.0208 7 6 1.9953 -0.7707 -1.1338 8 1 1.7324 -0.2708 -2.0661 9 6 1.3893 -2.1755 -1.1204 10 6 1.8523 -2.9340 -2.3375 11 7 2.8614 -3.7336 -2.3699 12 6 3.1105 -4.3174 -3.5461 13 6 4.1758 -5.2225 -3.7417 14 1 4.3903 -5.5984 -4.7311 15 6 4.9530 -5.6320 -2.6551 16 7 4.7609 -5.0980 -1.4742 17 14 6.2657 -6.9407 -2.8862 18 1 7.5530 -6.2927 -3.2444 19 1 6.4307 -7.7047 -1.6236 20 1 5.8571 -7.8649 -3.9744 21 6 2.2421 -3.9568 -4.5522 22 16 1.0984 -2.8514 -3.9245 23 1 -0.3633 -1.0092 0.1942 24 1 -0.3633 0.6727 0.7769 25 1 -0.3633 0.3364 -0.9710 26 1 1.7324 1.8609 -0.9375 27 1 1.5635 1.9256 0.8332 28 1 3.9098 2.3512 0.1310 29 1 3.7814 0.8573 1.0909 30 1 3.8887 1.0355 -1.9561 31 1 5.1999 0.4725 -0.8913 32 1 3.7814 -1.3833 -0.0954 33 1 3.9100 -1.4298 -1.8708 34 1 1.7103 -2.7011 -0.2209 35 1 0.3018 -2.1023 -1.1298 36 1 5.3008 -5.3821 -0.7199 37 1 2.2776 -4.3138 -5.5708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260812913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:50 Heat of formation + Delta-G solvation = 27.978480 kcal Electronic energy + Delta-G solvation = -18432.585621 eV Core-core repulsion = 15721.733618 eV Total energy + Delta-G solvation = -2710.852003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.16296 -37.62924 -33.64467 -33.30792 -32.32764 -29.25333 -27.14711 -26.24044 -25.50508 -22.81399 -22.14773 -20.69202 -19.39478 -18.58175 -17.52442 -15.69346 -15.41985 -15.11972 -14.77642 -14.37465 -14.04256 -13.80235 -13.34391 -12.91986 -12.83963 -12.49379 -12.21270 -11.76188 -11.71353 -11.56931 -11.51475 -11.17593 -11.07950 -10.69732 -10.65070 -10.42017 -10.33407 -10.08210 -9.88844 -9.66092 -9.22653 -8.15133 -7.97839 -7.91470 -7.29772 -6.51756 -4.33140 2.31928 2.95900 3.06375 3.11260 3.15616 3.71199 4.02475 4.04316 4.33341 4.98276 5.06398 5.14250 5.25590 5.43440 5.48087 5.53363 5.59462 5.65350 5.69615 5.79973 5.87457 5.95095 6.00872 6.14087 6.18557 6.28862 6.46364 6.56505 6.63674 6.83899 6.95557 7.13211 7.24540 7.29323 7.33506 7.55289 8.21783 8.57416 8.91116 9.63328 10.35466 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.006243 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.406047 B = 4483.816044 C = 5285.116303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.538 5.538 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.106 4.106 7 C 0.099 3.901 8 H 0.040 0.960 9 C -0.028 4.028 10 C 0.064 3.936 11 N -0.390 5.390 12 C 0.226 3.774 13 C -0.433 4.433 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.748 5.748 17 Si 0.909 3.091 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.263 1.263 21 C -0.456 4.456 22 S -0.055 6.055 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.025 0.975 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.273 0.727 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 9.900 4.646 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.263 5.263 3 C -0.070 4.070 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.144 4.144 7 C -0.011 4.011 8 H 0.058 0.942 9 C -0.070 4.070 10 C -0.221 4.221 11 N -0.103 5.103 12 C 0.104 3.896 13 C -0.467 4.467 14 H 0.100 0.900 15 C -0.150 4.150 16 N -0.371 5.371 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.594 4.594 22 S 0.192 5.808 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.985 10.057 5.348 12.068 hybrid contribution 1.006 -0.908 -1.200 1.810 sum -2.979 9.149 4.148 10.478 Atomic orbital electron populations 1.22424 0.87844 1.02574 0.99922 1.61923 1.07190 1.13132 1.44057 1.22059 0.95803 0.89216 0.99881 1.21587 0.94368 0.99646 0.99749 1.21600 0.99959 0.96589 0.97793 1.21561 0.92899 0.95867 1.04044 1.21575 0.95872 0.92837 0.90777 0.94186 1.20141 0.99074 0.93264 0.94487 1.27622 0.96751 1.01734 0.95978 1.67398 1.12074 1.05820 1.25025 1.18028 0.93904 0.93387 0.84307 1.18932 1.10495 1.22019 0.95242 0.89966 1.25966 0.97540 0.96582 0.94883 1.70105 1.32903 1.34035 1.00033 0.86307 0.80758 0.80859 0.78747 1.19535 1.20198 1.18687 1.25033 1.09620 1.20382 1.04410 1.82633 1.38470 1.49389 1.10327 0.90834 0.91862 0.95680 0.95274 0.91149 0.92118 0.91141 0.92751 0.91977 0.90875 0.90247 0.88854 0.90936 0.91594 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.88 60.07 0.53 0.78 16 2 N -0.54 -7.64 4.75 -234.92 -1.12 -8.76 16 3 C 0.06 0.72 5.46 -3.83 -0.02 0.70 16 4 C -0.12 -1.42 6.09 -26.65 -0.16 -1.59 16 5 C -0.12 -1.77 6.00 -26.62 -0.16 -1.93 16 6 C -0.11 -1.89 5.16 -26.66 -0.14 -2.02 16 7 C 0.10 1.64 1.90 -67.72 -0.13 1.52 16 8 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 9 C -0.03 -0.51 5.02 -27.88 -0.14 -0.65 16 10 C 0.06 1.45 5.91 -13.55 -0.08 1.37 16 11 N -0.39 -10.34 8.04 -8.36 -0.07 -10.41 16 12 C 0.23 6.31 6.46 -86.16 -0.56 5.75 16 13 C -0.43 -11.99 9.23 -37.92 -0.35 -12.34 16 14 H 0.08 2.18 7.85 -52.49 -0.41 1.77 16 15 C 0.07 1.89 5.49 -17.34 -0.10 1.80 16 16 N -0.75 -19.98 11.71 55.54 0.65 -19.33 16 17 Si 0.91 19.21 29.56 -169.99 -5.03 14.18 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 20 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 21 C -0.46 -11.86 10.98 30.54 0.34 -11.52 16 22 S -0.06 -1.24 23.16 -107.50 -2.49 -3.73 16 23 H 0.07 0.88 6.54 -51.93 -0.34 0.54 16 24 H 0.06 0.64 7.97 -51.93 -0.41 0.23 16 25 H 0.02 0.30 8.11 -51.93 -0.42 -0.12 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.75 8.01 -51.93 -0.42 0.33 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.71 7.02 -51.93 -0.36 1.34 16 34 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.07 1.18 6.24 -51.93 -0.32 0.85 16 36 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 37 H 0.13 3.38 8.06 -52.49 -0.42 2.96 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -28.89 308.36 -9.99 -38.88 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.63 Total: 2.65 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -0.96 Total: -18.14 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.53 Total: -38.49 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -2.49 Total: -3.73 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.89 -9.99 -38.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260812913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.858 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds