Wall clock time and date at job start Mon Mar 30 2020 07:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46849 * 111.00074 * 2 1 4 4 C 1.53036 * 109.52418 * 174.16132 * 3 2 1 5 5 C 1.53115 * 109.27573 * 59.18351 * 4 3 2 6 6 C 1.53097 * 109.15554 * 302.34136 * 5 4 3 7 7 C 1.46850 * 111.00031 * 235.79480 * 2 1 3 8 8 H 1.09001 * 109.46380 * 65.81786 * 7 2 1 9 9 C 1.52998 * 109.46044 * 305.84305 * 7 2 1 10 10 C 1.50699 * 109.47194 * 175.99241 * 9 7 2 11 11 N 1.28795 * 124.99278 * 95.08061 * 10 9 7 12 12 C 1.33650 * 116.06102 * 179.78736 * 11 10 9 13 13 C 1.41153 * 122.86793 * 180.27619 * 12 11 10 14 14 H 1.07995 * 120.00693 * 185.54930 * 13 12 11 15 15 C 1.39730 * 119.99498 * 5.54389 * 13 12 11 16 16 N 1.31015 * 119.99829 * 354.68849 * 15 13 12 17 17 Si 1.86795 * 119.99806 * 174.68531 * 15 13 12 18 18 H 1.48500 * 109.47161 * 90.00055 * 17 15 13 19 19 H 1.48498 * 109.47240 * 210.00216 * 17 15 13 20 20 H 1.48509 * 109.47118 * 330.00432 * 17 15 13 21 21 C 1.37705 * 114.27422 * 0.49826 * 12 11 10 22 22 S 1.71001 * 108.83560 * 359.74068 * 21 12 11 23 23 H 1.09003 * 109.46937 * 190.89108 * 1 2 3 24 24 H 1.08999 * 109.46917 * 310.89035 * 1 2 3 25 25 H 1.08997 * 109.47039 * 70.89085 * 1 2 3 26 26 H 1.08997 * 109.46335 * 294.18370 * 3 2 1 27 27 H 1.09007 * 109.45651 * 54.15685 * 3 2 1 28 28 H 1.08995 * 109.50026 * 179.12216 * 4 3 2 29 29 H 1.09002 * 109.50350 * 299.20167 * 4 3 2 30 30 H 1.08994 * 109.52939 * 62.24976 * 5 4 3 31 31 H 1.09003 * 109.52253 * 182.37367 * 5 4 3 32 32 H 1.08997 * 109.50717 * 297.71382 * 6 5 4 33 33 H 1.08997 * 109.48862 * 177.60347 * 6 5 4 34 34 H 1.09004 * 109.47172 * 295.99389 * 9 7 2 35 35 H 1.09003 * 109.47278 * 55.99024 * 9 7 2 36 36 H 0.97010 * 119.99557 * 180.02562 * 16 15 13 37 37 H 1.07996 * 125.58322 * 179.73722 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1187 0.5371 -1.0145 6 6 3.5181 -0.8711 -1.0208 7 6 1.9953 -0.7707 -1.1338 8 1 1.7324 -0.2708 -2.0661 9 6 1.3893 -2.1755 -1.1204 10 6 1.8523 -2.9340 -2.3375 11 7 2.8614 -3.7336 -2.3699 12 6 3.1105 -4.3174 -3.5461 13 6 4.1758 -5.2225 -3.7417 14 1 4.3903 -5.5984 -4.7311 15 6 4.9530 -5.6320 -2.6551 16 7 4.7609 -5.0980 -1.4742 17 14 6.2657 -6.9407 -2.8862 18 1 7.5530 -6.2927 -3.2444 19 1 6.4307 -7.7047 -1.6236 20 1 5.8571 -7.8649 -3.9744 21 6 2.2421 -3.9568 -4.5522 22 16 1.0984 -2.8514 -3.9245 23 1 -0.3633 -1.0092 0.1942 24 1 -0.3633 0.6727 0.7769 25 1 -0.3633 0.3364 -0.9710 26 1 1.7324 1.8609 -0.9375 27 1 1.5635 1.9256 0.8332 28 1 3.9098 2.3512 0.1310 29 1 3.7814 0.8573 1.0909 30 1 3.8887 1.0355 -1.9561 31 1 5.1999 0.4725 -0.8913 32 1 3.7814 -1.3833 -0.0954 33 1 3.9100 -1.4298 -1.8708 34 1 1.7103 -2.7011 -0.2209 35 1 0.3018 -2.1023 -1.1298 36 1 5.3008 -5.3821 -0.7199 37 1 2.2776 -4.3138 -5.5708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260812913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:49 Heat of formation + Delta-G solvation = 10.367441 kcal Electronic energy + Delta-G solvation = -18433.349293 eV Core-core repulsion = 15721.733618 eV Total energy + Delta-G solvation = -2711.615675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48223 -39.44446 -35.39039 -34.56696 -33.86333 -30.98029 -28.63343 -27.56826 -27.31379 -24.19044 -23.52976 -22.20163 -20.66625 -20.43031 -19.46525 -17.19915 -16.98625 -16.82457 -16.18849 -15.66261 -15.32836 -15.05740 -14.95683 -14.62930 -14.29011 -13.91710 -13.48682 -13.45537 -13.18537 -13.12971 -12.83174 -12.63849 -12.53269 -12.47318 -12.24198 -11.93646 -11.61762 -11.57678 -11.32730 -11.19076 -11.05453 -9.89272 -9.85488 -9.26029 -9.22809 -8.46578 -6.39633 0.40717 1.10467 1.36676 1.39538 1.51256 1.76017 2.22875 2.35928 2.91396 3.45190 3.72523 3.80993 3.88383 4.00862 4.20548 4.29929 4.41251 4.52361 4.59695 4.70791 4.72385 4.79854 4.90520 4.93338 5.03487 5.08167 5.09605 5.11713 5.14331 5.27841 5.32904 5.37082 5.49936 5.54500 6.13105 6.15992 6.23588 6.54312 6.87629 7.68542 8.42050 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.006243 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.406047 B = 4483.816044 C = 5285.116303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.546 5.546 3 C 0.056 3.944 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.101 4.101 7 C 0.111 3.889 8 H 0.033 0.967 9 C -0.024 4.024 10 C 0.070 3.930 11 N -0.427 5.427 12 C 0.197 3.803 13 C -0.472 4.472 14 H 0.080 0.920 15 C 0.030 3.970 16 N -0.777 5.777 17 Si 0.988 3.012 18 H -0.262 1.262 19 H -0.265 1.265 20 H -0.260 1.260 21 C -0.490 4.490 22 S 0.000 6.000 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.027 0.973 26 H 0.032 0.968 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.281 0.719 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 11.236 5.767 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.139 4.139 7 C 0.001 3.999 8 H 0.051 0.949 9 C -0.066 4.066 10 C -0.215 4.215 11 N -0.141 5.141 12 C 0.075 3.925 13 C -0.506 4.506 14 H 0.098 0.902 15 C -0.190 4.190 16 N -0.400 5.400 17 Si 0.808 3.192 18 H -0.186 1.186 19 H -0.189 1.189 20 H -0.184 1.184 21 C -0.629 4.629 22 S 0.248 5.752 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.539 11.418 6.460 13.882 hybrid contribution 1.085 -1.239 -1.536 2.253 sum -3.453 10.179 4.924 11.823 Atomic orbital electron populations 1.22524 0.86207 1.03280 1.01019 1.61908 1.08720 1.14222 1.42227 1.22192 0.95627 0.88156 1.01170 1.21573 0.94569 1.00555 0.98077 1.21581 1.00040 0.94816 0.99246 1.21421 0.94235 0.97279 1.00983 1.21306 0.94786 0.92041 0.91724 0.94873 1.20290 1.00667 0.93707 0.91942 1.28410 0.95360 1.00176 0.97540 1.67409 1.14010 1.07724 1.25003 1.18454 0.94653 0.93999 0.85404 1.19274 1.11894 1.23387 0.96001 0.90226 1.26863 0.99502 0.98579 0.94075 1.70192 1.33867 1.35064 1.00838 0.85131 0.77461 0.77609 0.79026 1.18647 1.18939 1.18399 1.25281 1.11180 1.21973 1.04457 1.82185 1.36399 1.47566 1.09039 0.90984 0.89324 0.95403 0.94938 0.88464 0.89370 0.91519 0.92589 0.91933 0.92620 0.94800 0.89882 0.88208 0.90906 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.88 127.69 1.13 1.49 16 2 N -0.55 -14.22 4.75 -897.16 -4.26 -18.48 16 3 C 0.06 1.19 5.46 86.32 0.47 1.67 16 4 C -0.11 -2.43 6.09 30.64 0.19 -2.24 16 5 C -0.12 -3.39 6.00 30.67 0.18 -3.21 16 6 C -0.10 -3.68 5.16 30.64 0.16 -3.53 16 7 C 0.11 3.63 1.90 44.94 0.09 3.72 16 8 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 9 C -0.02 -0.89 5.02 29.85 0.15 -0.74 16 10 C 0.07 3.23 5.91 88.55 0.52 3.75 16 11 N -0.43 -23.51 8.04 -180.35 -1.45 -24.96 16 12 C 0.20 11.47 6.46 39.46 0.25 11.72 16 13 C -0.47 -27.19 9.23 23.35 0.22 -26.98 16 14 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 15 C 0.03 1.58 5.49 85.18 0.47 2.04 16 16 N -0.78 -42.65 11.71 21.80 0.26 -42.40 16 17 Si 0.99 39.92 29.56 68.60 2.03 41.95 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 21 C -0.49 -26.33 10.98 67.69 0.74 -25.58 16 22 S 0.00 0.00 23.16 -56.49 -1.31 -1.31 16 23 H 0.07 1.52 6.54 -2.39 -0.02 1.50 16 24 H 0.09 1.43 7.97 -2.39 -0.02 1.41 16 25 H 0.03 0.57 8.11 -2.39 -0.02 0.55 16 26 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 1.62 8.01 -2.38 -0.02 1.60 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.03 1.52 7.02 -2.39 -0.02 1.51 16 34 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 35 H 0.10 3.06 6.24 -2.39 -0.01 3.05 16 36 H 0.28 13.97 8.30 -92.70 -0.77 13.20 16 37 H 0.13 6.94 8.06 -2.91 -0.02 6.92 16 Total: -1.00 -64.86 308.36 0.89 -63.97 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.04 Total: 19.11 kcal Atomic # 6 Polarization: -42.45 SS G_CDS: 4.57 Total: -37.88 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -5.45 Total: -85.83 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.31 Total: -1.31 kcal Total: -64.86 0.89 -63.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260812913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.339 kcal (2) G-P(sol) polarization free energy of solvation -64.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds