Wall clock time and date at job start Mon Mar 30 2020 07:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47354 * 2 1 4 4 C 1.46850 * 110.99547 * 314.20566 * 3 2 1 5 5 C 1.53041 * 109.52256 * 174.16052 * 4 3 2 6 6 C 1.53116 * 109.27672 * 59.18137 * 5 4 3 7 7 C 1.53128 * 109.16275 * 302.34464 * 6 5 4 8 8 H 1.09004 * 109.53449 * 297.69726 * 7 6 5 9 9 C 1.50695 * 109.50322 * 177.59526 * 7 6 5 10 10 N 1.29519 * 124.56644 * 300.22118 * 9 7 6 11 11 C 1.30667 * 117.63757 * 179.97438 * 10 9 7 12 12 C 1.38595 * 113.55090 * 0.02562 * 11 10 9 13 13 C 1.40034 * 126.25749 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00203 * 353.55524 * 13 12 11 15 15 C 1.40064 * 120.00006 * 173.55611 * 13 12 11 16 16 N 1.30859 * 120.00331 * 6.44284 * 15 13 12 17 17 Si 1.86801 * 119.99980 * 186.44794 * 15 13 12 18 18 H 1.48496 * 109.47532 * 94.98314 * 17 15 13 19 19 H 1.48509 * 109.47091 * 214.98246 * 17 15 13 20 20 H 1.48502 * 109.46967 * 334.97890 * 17 15 13 21 21 S 1.70881 * 124.56015 * 120.19963 * 9 7 6 22 22 C 1.46846 * 111.00006 * 189.99848 * 3 2 1 23 23 H 1.09004 * 109.47045 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47353 * 300.00484 * 1 2 3 25 25 H 1.08997 * 109.47062 * 60.00168 * 1 2 3 26 26 H 1.08996 * 109.47549 * 239.99426 * 2 1 3 27 27 H 1.09004 * 109.46976 * 119.99401 * 2 1 3 28 28 H 1.09001 * 109.46532 * 294.17541 * 4 3 2 29 29 H 1.08998 * 109.46145 * 54.15618 * 4 3 2 30 30 H 1.08992 * 109.50287 * 179.12315 * 5 4 3 31 31 H 1.08996 * 109.50410 * 299.24057 * 5 4 3 32 32 H 1.08995 * 109.52217 * 182.44253 * 6 5 4 33 33 H 1.08995 * 109.52494 * 62.25072 * 6 5 4 34 34 H 1.08003 * 123.22984 * 179.97438 * 11 10 9 35 35 H 0.97007 * 120.00509 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.46541 * 65.82573 * 22 3 2 37 37 H 1.08993 * 109.46600 * 305.84891 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2938 2.1997 -0.9828 5 6 1.7265 3.6620 -0.8542 6 6 3.2354 3.7656 -1.0924 7 6 3.9656 2.8704 -0.0872 8 1 3.7651 3.2205 0.9254 9 6 5.4481 2.9207 -0.3528 10 7 6.0072 2.5710 -1.4675 11 6 7.3074 2.6701 -1.5507 12 6 7.9014 3.1493 -0.3938 13 6 9.2712 3.3584 -0.1916 14 1 9.9820 3.0441 -0.9415 15 6 9.7195 3.9751 0.9833 16 7 8.8742 4.2417 1.9461 17 14 11.5242 4.4174 1.1760 18 1 11.7329 5.8317 0.7746 19 1 11.9286 4.2405 2.5940 20 1 12.3458 3.5313 0.3128 21 16 6.6178 3.4474 0.7761 22 6 3.4680 1.4310 -0.2380 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.5178 1.8418 -1.9877 29 1 0.2223 2.1207 -0.7996 30 1 1.1991 4.2639 -1.5942 31 1 1.4902 4.0248 0.1461 32 1 3.5551 4.7990 -0.9590 33 1 3.4674 3.4395 -2.1062 34 1 7.8659 2.4034 -2.4358 35 1 9.1847 4.6691 2.7597 36 1 3.6818 1.0767 -1.2465 37 1 3.9755 0.7937 0.4860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260816756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:35 Heat of formation + Delta-G solvation = 7.300085 kcal Electronic energy + Delta-G solvation = -17954.860490 eV Core-core repulsion = 15243.111804 eV Total energy + Delta-G solvation = -2711.748686 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.94912 -37.22222 -34.50082 -33.83156 -31.07553 -29.81125 -28.86385 -25.37197 -24.22027 -23.15668 -22.11207 -20.76978 -19.60928 -18.41312 -17.26269 -15.94355 -15.59441 -15.15724 -14.83138 -14.36801 -13.93663 -13.59237 -13.29562 -13.01912 -12.74767 -12.36828 -12.16168 -11.96749 -11.89649 -11.62445 -11.52929 -11.33079 -11.13305 -10.89721 -10.74526 -10.53021 -10.15560 -9.98919 -9.90332 -9.69936 -9.29027 -8.01587 -7.79543 -7.71641 -7.14689 -7.01639 -4.59032 2.49642 2.89241 2.95120 3.03872 3.45681 3.64443 4.02109 4.16173 4.31310 5.02435 5.07441 5.18474 5.25176 5.37264 5.46607 5.55243 5.70727 5.77185 5.87079 5.92836 6.03159 6.04768 6.13432 6.23214 6.27551 6.32289 6.43862 6.47317 6.75187 6.83599 6.93088 7.07100 7.22855 7.39980 7.44395 7.72944 7.94955 8.36296 8.36645 9.76296 9.80734 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043657 B = 0.004356 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.203627 B = 6425.919028 C = 6481.815998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 N -0.541 5.541 4 C 0.052 3.948 5 C -0.117 4.117 6 C -0.105 4.105 7 C 0.034 3.966 8 H 0.071 0.929 9 C -0.177 4.177 10 N -0.429 5.429 11 C -0.176 4.176 12 C -0.003 4.003 13 C -0.375 4.375 14 H 0.097 0.903 15 C 0.050 3.950 16 N -0.774 5.774 17 Si 0.936 3.064 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.258 1.258 21 S 0.123 5.877 22 C 0.074 3.926 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.134 0.866 35 H 0.297 0.703 36 H 0.038 0.962 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 -1.967 0.237 9.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.078 4.078 3 N -0.266 5.266 4 C -0.076 4.076 5 C -0.155 4.155 6 C -0.144 4.144 7 C 0.012 3.988 8 H 0.089 0.911 9 C -0.446 4.446 10 N -0.141 5.141 11 C -0.330 4.330 12 C -0.126 4.126 13 C -0.413 4.413 14 H 0.115 0.885 15 C -0.172 4.172 16 N -0.401 5.401 17 Si 0.759 3.241 18 H -0.190 1.190 19 H -0.197 1.197 20 H -0.181 1.181 21 S 0.376 5.624 22 C -0.055 4.055 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.152 0.848 35 H 0.109 0.891 36 H 0.056 0.944 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.538 -1.533 1.511 9.778 hybrid contribution 1.599 -0.392 -1.518 2.240 sum -7.939 -1.925 -0.007 8.169 Atomic orbital electron populations 1.21935 0.95471 1.01423 1.02322 1.22043 0.95218 0.89867 1.00638 1.62053 1.04951 1.09825 1.49810 1.22175 0.98171 0.93991 0.93280 1.21624 0.96883 0.95215 1.01735 1.21576 0.93139 0.99804 0.99922 1.19073 0.87977 0.93512 0.98248 0.91069 1.25718 0.99335 1.21835 0.97716 1.65103 1.11430 1.13303 1.24255 1.21376 0.88756 1.23418 0.99472 1.23319 0.97407 0.97389 0.94529 1.19158 0.91223 1.28843 1.02044 0.88533 1.26215 1.01881 0.94305 0.94796 1.69039 1.36842 1.28900 1.05317 0.85792 0.79654 0.79868 0.78754 1.19025 1.19702 1.18136 1.84004 0.96079 1.65415 1.16951 1.22081 0.85522 0.97934 0.99940 0.92578 0.91877 0.92471 0.95255 0.90892 0.95366 0.90771 0.92161 0.91459 0.92330 0.91945 0.84829 0.89076 0.94376 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.16 37.16 0.34 -1.27 16 2 C 0.05 0.66 5.99 -3.83 -0.02 0.64 16 3 N -0.54 -8.41 4.81 -234.67 -1.13 -9.54 16 4 C 0.05 0.73 4.85 -3.83 -0.02 0.71 16 5 C -0.12 -1.69 6.09 -26.65 -0.16 -1.85 16 6 C -0.11 -1.90 5.26 -26.60 -0.14 -2.04 16 7 C 0.03 0.68 2.78 -91.69 -0.25 0.43 16 8 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 9 C -0.18 -4.25 5.89 -13.26 -0.08 -4.33 16 10 N -0.43 -11.09 10.46 -10.84 -0.11 -11.20 16 11 C -0.18 -4.66 11.46 -17.92 -0.21 -4.87 16 12 C 0.00 -0.08 6.24 -38.78 -0.24 -0.32 16 13 C -0.38 -9.51 9.32 -38.22 -0.36 -9.86 16 14 H 0.10 2.30 7.86 -52.49 -0.41 1.89 16 15 C 0.05 1.16 5.49 -17.28 -0.09 1.07 16 16 N -0.77 -18.62 10.80 55.56 0.60 -18.02 16 17 Si 0.94 17.35 29.57 -169.99 -5.03 12.32 16 18 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 19 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 20 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 21 S 0.12 3.11 20.25 -107.50 -2.18 0.93 16 22 C 0.07 1.37 4.68 -3.83 -0.02 1.35 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.58 6.21 -51.93 -0.32 0.25 16 26 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.89 5.81 -51.93 -0.30 0.59 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.13 3.34 8.06 -52.48 -0.42 2.92 16 35 H 0.30 6.39 8.30 -40.82 -0.34 6.05 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 LS Contribution 308.24 15.07 4.65 4.65 Total: -1.00 -27.34 308.24 -10.11 -37.46 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.66 Total: 3.75 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -1.25 Total: -20.35 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.64 Total: -38.76 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.18 Total: 0.93 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.34 -10.11 -37.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260816756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.756 kcal (2) G-P(sol) polarization free energy of solvation -27.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds