Wall clock time and date at job start Mon Mar 30 2020 07:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47354 * 2 1 4 4 C 1.46850 * 110.99547 * 314.20566 * 3 2 1 5 5 C 1.53041 * 109.52256 * 174.16052 * 4 3 2 6 6 C 1.53116 * 109.27672 * 59.18137 * 5 4 3 7 7 C 1.53128 * 109.16275 * 302.34464 * 6 5 4 8 8 H 1.09004 * 109.53449 * 297.69726 * 7 6 5 9 9 C 1.50695 * 109.50322 * 177.59526 * 7 6 5 10 10 N 1.29519 * 124.56644 * 300.22118 * 9 7 6 11 11 C 1.30667 * 117.63757 * 179.97438 * 10 9 7 12 12 C 1.38595 * 113.55090 * 0.02562 * 11 10 9 13 13 C 1.40034 * 126.25749 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00203 * 353.55524 * 13 12 11 15 15 C 1.40064 * 120.00006 * 173.55611 * 13 12 11 16 16 N 1.30859 * 120.00331 * 6.44284 * 15 13 12 17 17 Si 1.86801 * 119.99980 * 186.44794 * 15 13 12 18 18 H 1.48496 * 109.47532 * 94.98314 * 17 15 13 19 19 H 1.48509 * 109.47091 * 214.98246 * 17 15 13 20 20 H 1.48502 * 109.46967 * 334.97890 * 17 15 13 21 21 S 1.70881 * 124.56015 * 120.19963 * 9 7 6 22 22 C 1.46846 * 111.00006 * 189.99848 * 3 2 1 23 23 H 1.09004 * 109.47045 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47353 * 300.00484 * 1 2 3 25 25 H 1.08997 * 109.47062 * 60.00168 * 1 2 3 26 26 H 1.08996 * 109.47549 * 239.99426 * 2 1 3 27 27 H 1.09004 * 109.46976 * 119.99401 * 2 1 3 28 28 H 1.09001 * 109.46532 * 294.17541 * 4 3 2 29 29 H 1.08998 * 109.46145 * 54.15618 * 4 3 2 30 30 H 1.08992 * 109.50287 * 179.12315 * 5 4 3 31 31 H 1.08996 * 109.50410 * 299.24057 * 5 4 3 32 32 H 1.08995 * 109.52217 * 182.44253 * 6 5 4 33 33 H 1.08995 * 109.52494 * 62.25072 * 6 5 4 34 34 H 1.08003 * 123.22984 * 179.97438 * 11 10 9 35 35 H 0.97007 * 120.00509 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.46541 * 65.82573 * 22 3 2 37 37 H 1.08993 * 109.46600 * 305.84891 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2938 2.1997 -0.9828 5 6 1.7265 3.6620 -0.8542 6 6 3.2354 3.7656 -1.0924 7 6 3.9656 2.8704 -0.0872 8 1 3.7651 3.2205 0.9254 9 6 5.4481 2.9207 -0.3528 10 7 6.0072 2.5710 -1.4675 11 6 7.3074 2.6701 -1.5507 12 6 7.9014 3.1493 -0.3938 13 6 9.2712 3.3584 -0.1916 14 1 9.9820 3.0441 -0.9415 15 6 9.7195 3.9751 0.9833 16 7 8.8742 4.2417 1.9461 17 14 11.5242 4.4174 1.1760 18 1 11.7329 5.8317 0.7746 19 1 11.9286 4.2405 2.5940 20 1 12.3458 3.5313 0.3128 21 16 6.6178 3.4474 0.7761 22 6 3.4680 1.4310 -0.2380 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.5178 1.8418 -1.9877 29 1 0.2223 2.1207 -0.7996 30 1 1.1991 4.2639 -1.5942 31 1 1.4902 4.0248 0.1461 32 1 3.5551 4.7990 -0.9590 33 1 3.4674 3.4395 -2.1062 34 1 7.8659 2.4034 -2.4358 35 1 9.1847 4.6691 2.7597 36 1 3.6818 1.0767 -1.2465 37 1 3.9755 0.7937 0.4860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260816756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:34 Heat of formation + Delta-G solvation = -8.835514 kcal Electronic energy + Delta-G solvation = -17955.560182 eV Core-core repulsion = 15243.111804 eV Total energy + Delta-G solvation = -2712.448378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37006 -39.04513 -36.22451 -35.28251 -32.53863 -31.21227 -30.44243 -27.08591 -25.63006 -24.82855 -23.56159 -22.22102 -21.05640 -20.19806 -19.09873 -17.56471 -17.25073 -16.70627 -15.99122 -15.69829 -15.45473 -15.08530 -14.92599 -14.32394 -14.15799 -14.10086 -13.91405 -13.64637 -13.27511 -13.07862 -12.90333 -12.53763 -12.50480 -12.25073 -12.06835 -11.95928 -11.60365 -11.58307 -11.32123 -11.26270 -11.21282 -9.75979 -9.69273 -9.27863 -9.14347 -8.85255 -6.55289 0.64496 1.36352 1.47229 1.52217 1.54881 1.96763 2.17162 2.36787 2.96460 3.09563 3.87594 3.94628 4.01881 4.18799 4.27841 4.29907 4.41227 4.53482 4.59830 4.62127 4.76093 4.77742 4.90217 4.91720 5.00694 5.07577 5.10845 5.14853 5.19182 5.26362 5.30226 5.37255 5.51864 5.79458 6.00858 6.11493 6.22612 6.39618 6.45074 7.81178 7.98886 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043657 B = 0.004356 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.203627 B = 6425.919028 C = 6481.815998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.543 5.543 4 C 0.050 3.950 5 C -0.108 4.108 6 C -0.100 4.100 7 C 0.032 3.968 8 H 0.073 0.927 9 C -0.170 4.170 10 N -0.444 5.444 11 C -0.212 4.212 12 C -0.030 4.030 13 C -0.399 4.399 14 H 0.104 0.896 15 C 0.013 3.987 16 N -0.795 5.795 17 Si 1.014 2.986 18 H -0.259 1.259 19 H -0.259 1.259 20 H -0.253 1.253 21 S 0.107 5.893 22 C 0.088 3.912 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.022 0.978 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.136 0.864 35 H 0.310 0.690 36 H 0.015 0.985 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 -1.566 1.030 9.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 N -0.268 5.268 4 C -0.077 4.077 5 C -0.146 4.146 6 C -0.139 4.139 7 C 0.010 3.990 8 H 0.091 0.909 9 C -0.441 4.441 10 N -0.156 5.156 11 C -0.364 4.364 12 C -0.153 4.153 13 C -0.436 4.436 14 H 0.122 0.878 15 C -0.207 4.207 16 N -0.421 5.421 17 Si 0.832 3.168 18 H -0.183 1.183 19 H -0.183 1.183 20 H -0.176 1.176 21 S 0.359 5.641 22 C -0.042 4.042 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.091 0.909 28 H 0.039 0.961 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.154 0.846 35 H 0.123 0.877 36 H 0.034 0.966 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.287 -1.145 2.291 10.601 hybrid contribution 1.803 -0.521 -1.709 2.539 sum -8.484 -1.665 0.582 8.666 Atomic orbital electron populations 1.21884 0.92804 1.02882 1.02758 1.22171 0.97388 0.88305 1.00362 1.62065 1.02894 1.11621 1.50244 1.22296 0.99633 0.93248 0.92537 1.21602 0.93869 0.96125 1.03027 1.21500 0.95898 0.98555 0.97978 1.19202 0.85771 0.95172 0.98904 0.90902 1.26400 1.01036 1.19941 0.96738 1.65120 1.11341 1.14130 1.25027 1.21515 0.89313 1.25506 1.00032 1.23647 0.98610 0.98118 0.94964 1.19568 0.90956 1.29601 1.03453 0.87817 1.27257 1.06786 0.93102 0.93525 1.69060 1.39071 1.28097 1.05910 0.84661 0.73167 0.79633 0.79295 1.18335 1.18332 1.17610 1.83834 0.96422 1.66356 1.17513 1.21774 0.87935 0.96310 0.98134 0.90750 0.91509 0.91803 0.95919 0.90896 0.96056 0.87647 0.89535 0.90677 0.93081 0.93913 0.84613 0.87746 0.96636 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.16 71.98 0.66 -1.95 16 2 C 0.05 1.12 5.99 86.30 0.52 1.64 16 3 N -0.54 -16.22 4.81 -896.36 -4.31 -20.53 16 4 C 0.05 1.30 4.85 86.33 0.42 1.72 16 5 C -0.11 -2.90 6.09 30.65 0.19 -2.71 16 6 C -0.10 -3.61 5.26 30.68 0.16 -3.45 16 7 C 0.03 1.29 2.78 -11.49 -0.03 1.26 16 8 H 0.07 2.92 8.12 -2.39 -0.02 2.90 16 9 C -0.17 -8.45 5.89 88.45 0.52 -7.93 16 10 N -0.44 -23.90 10.46 -188.22 -1.97 -25.87 16 11 C -0.21 -11.70 11.46 84.95 0.97 -10.73 16 12 C -0.03 -1.67 6.24 22.79 0.14 -1.52 16 13 C -0.40 -20.54 9.32 23.15 0.22 -20.32 16 14 H 0.10 5.01 7.86 -2.91 -0.02 4.99 16 15 C 0.01 0.59 5.49 85.28 0.47 1.06 16 16 N -0.80 -38.01 10.80 21.85 0.24 -37.78 16 17 Si 1.01 34.30 29.57 68.60 2.03 36.33 16 18 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 19 H -0.26 -8.21 7.11 99.48 0.71 -7.50 16 20 H -0.25 -8.31 7.11 99.48 0.71 -7.60 16 21 S 0.11 5.54 20.25 -56.49 -1.14 4.39 16 22 C 0.09 3.31 4.68 86.33 0.40 3.71 16 23 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.06 1.06 6.21 -2.39 -0.01 1.05 16 26 H 0.02 0.59 8.08 -2.39 -0.02 0.57 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 2.13 5.81 -2.39 -0.01 2.12 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.14 7.16 8.06 -2.91 -0.02 7.13 16 35 H 0.31 13.02 8.30 -92.70 -0.77 12.25 16 36 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 37 H 0.05 2.18 8.12 -2.39 -0.02 2.16 16 Total: -1.00 -60.41 308.24 0.52 -59.89 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 1.04 Total: 22.79 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 4.64 Total: -39.22 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -6.04 Total: -84.18 kcal Atomic # 14 Polarization: 34.30 SS G_CDS: 2.03 Total: 36.33 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -1.14 Total: 4.39 kcal Total: -60.41 0.52 -59.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260816756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.050 kcal (2) G-P(sol) polarization free energy of solvation -60.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds