Wall clock time and date at job start Mon Mar 30 2020 07:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47005 * 2 1 4 4 C 1.48539 * 110.99796 * 287.39483 * 3 2 1 5 5 C 1.54932 * 103.22489 * 200.27757 * 4 3 2 6 6 C 1.54598 * 102.92273 * 37.41993 * 5 4 3 7 7 H 1.09002 * 110.31174 * 96.95391 * 6 5 4 8 8 C 1.52997 * 110.39179 * 219.08302 * 6 5 4 9 9 C 1.50703 * 109.46824 * 292.14927 * 8 6 5 10 10 N 1.29523 * 124.56228 * 89.70171 * 9 8 6 11 11 C 1.30675 * 117.63212 * 179.75802 * 10 9 8 12 12 C 1.38581 * 113.55155 * 0.52048 * 11 10 9 13 13 C 1.40039 * 126.25881 * 179.76458 * 12 11 10 14 14 H 1.08000 * 120.00642 * 179.97438 * 13 12 11 15 15 C 1.40075 * 119.99643 * 359.95819 * 13 12 11 16 16 N 1.30866 * 120.00171 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99907 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47331 * 89.99888 * 17 15 13 19 19 H 1.48505 * 109.46861 * 209.99656 * 17 15 13 20 20 H 1.48497 * 109.47284 * 329.99606 * 17 15 13 21 21 S 1.70884 * 124.56447 * 270.00045 * 9 8 6 22 22 C 1.47897 * 110.99752 * 170.00361 * 3 2 1 23 23 H 1.09002 * 109.46683 * 300.00039 * 1 2 3 24 24 H 1.08990 * 109.47273 * 60.00030 * 1 2 3 25 25 H 1.08999 * 109.46919 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46683 * 239.99961 * 2 1 3 27 27 H 1.08997 * 109.47079 * 120.00340 * 2 1 3 28 28 H 1.08999 * 110.66816 * 318.71519 * 4 3 2 29 29 H 1.09005 * 110.66488 * 81.84813 * 4 3 2 30 30 H 1.08994 * 110.72994 * 279.05876 * 5 4 3 31 31 H 1.09002 * 110.72359 * 155.77140 * 5 4 3 32 32 H 1.08993 * 109.47324 * 52.14888 * 8 6 5 33 33 H 1.09001 * 109.47249 * 172.15261 * 8 6 5 34 34 H 1.08002 * 123.22072 * 180.28090 * 11 10 9 35 35 H 0.96998 * 119.99756 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.92227 * 26.48731 * 22 3 2 37 37 H 1.08999 * 109.91658 * 265.19118 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8062 2.0250 -1.3233 5 6 2.8087 3.2062 -1.3116 6 6 4.0330 2.6134 -0.5769 7 1 4.7725 2.2621 -1.2965 8 6 4.6531 3.6573 0.3539 9 6 5.2676 4.7611 -0.4678 10 7 4.6407 5.8274 -0.8520 11 6 5.3079 6.7017 -1.5577 12 6 6.6212 6.3313 -1.8001 13 6 7.5673 7.0635 -2.5280 14 1 8.5679 6.6775 -2.6547 15 6 7.2157 8.2966 -3.0920 16 7 6.0030 8.7640 -2.9391 17 14 8.4775 9.2730 -4.0635 18 1 8.4120 8.8811 -5.4943 19 1 8.1874 10.7237 -3.9339 20 1 9.8361 8.9907 -3.5346 21 16 6.8833 4.7710 -1.0242 22 6 3.4784 1.4314 0.2397 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0405 1.3296 -2.1293 29 1 0.7830 2.3897 -1.4137 30 1 2.4007 4.0531 -0.7599 31 1 3.0730 3.4979 -2.3281 32 1 3.8800 4.0728 1.0002 33 1 5.4236 3.1873 0.9650 34 1 4.8761 7.6227 -1.9206 35 1 5.7596 9.6181 -3.3294 36 1 3.9392 0.5014 -0.0932 37 1 3.6756 1.5879 1.3002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260817002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:57 Heat of formation + Delta-G solvation = 15.834002 kcal Electronic energy + Delta-G solvation = -17647.148547 eV Core-core repulsion = 14935.769920 eV Total energy + Delta-G solvation = -2711.378627 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.02257 -37.41671 -34.53088 -33.70855 -30.76602 -29.07071 -28.92264 -26.51925 -23.97861 -22.80140 -22.03694 -20.58498 -19.68840 -19.06930 -16.87127 -16.38559 -15.82239 -15.24305 -14.79696 -14.63618 -13.67416 -13.63509 -13.24824 -13.04521 -12.54464 -12.51434 -12.33347 -12.01579 -11.63770 -11.49087 -11.41691 -11.28506 -11.15736 -11.04614 -10.81465 -10.61543 -10.29872 -10.23475 -10.08167 -9.70043 -9.57169 -8.31669 -7.95153 -7.87607 -7.16768 -6.96391 -4.56129 2.42970 2.89353 2.94473 3.02601 3.23711 3.64731 3.74876 4.10111 4.41165 4.85083 4.97742 5.05017 5.14987 5.25888 5.40174 5.44654 5.49847 5.67003 5.70524 5.83413 5.90340 5.93355 6.11031 6.11941 6.18139 6.28857 6.44296 6.59207 6.70727 6.72813 6.78131 7.10141 7.16800 7.19066 7.46492 7.80543 8.15867 8.37502 8.67940 9.84044 9.85543 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.046307 B = 0.003920 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.519675 B = 7141.223384 C = 7439.495855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 N -0.518 5.518 4 C 0.033 3.967 5 C -0.104 4.104 6 C -0.089 4.089 7 H 0.070 0.930 8 C 0.005 3.995 9 C -0.122 4.122 10 N -0.420 5.420 11 C -0.142 4.142 12 C 0.015 3.985 13 C -0.377 4.377 14 H 0.086 0.914 15 C 0.064 3.936 16 N -0.767 5.767 17 Si 0.934 3.066 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.258 1.258 21 S -0.069 6.069 22 C 0.040 3.960 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.195 0.805 35 H 0.288 0.712 36 H 0.039 0.961 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 -9.795 1.463 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 N -0.242 5.242 4 C -0.094 4.094 5 C -0.142 4.142 6 C -0.109 4.109 7 H 0.088 0.912 8 C -0.036 4.036 9 C -0.391 4.391 10 N -0.131 5.131 11 C -0.296 4.296 12 C -0.106 4.106 13 C -0.414 4.414 14 H 0.104 0.896 15 C -0.159 4.159 16 N -0.391 5.391 17 Si 0.757 3.243 18 H -0.190 1.190 19 H -0.196 1.196 20 H -0.182 1.182 21 S 0.180 5.820 22 C -0.087 4.087 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.211 0.789 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.546 -10.051 2.164 11.242 hybrid contribution 0.675 0.711 -1.438 1.740 sum -3.871 -9.340 0.726 10.137 Atomic orbital electron populations 1.21728 0.94987 1.01041 1.02527 1.22232 0.96256 0.89848 1.00405 1.64769 1.14327 1.15789 1.29336 1.23305 1.00380 0.96314 0.89416 1.22414 0.93864 0.97087 1.00871 1.22009 0.97299 0.94354 0.97243 0.91201 1.19648 0.98001 0.91332 0.94661 1.24986 0.93568 1.02265 1.18282 1.65409 1.37800 1.00916 1.09005 1.23106 0.91454 1.03616 1.11427 1.23290 0.97638 0.92106 0.97553 1.19022 0.97737 1.00845 1.23842 0.89622 1.26111 0.96527 0.97474 0.95745 1.69480 1.18482 1.18081 1.33089 0.85867 0.80363 0.78334 0.79738 1.18964 1.19641 1.18215 1.82979 1.18300 1.24043 1.56651 1.22952 0.87365 0.97418 1.01009 0.91910 0.92796 0.92717 0.95034 0.91177 0.94370 0.90490 0.89935 0.91520 0.91090 0.92476 0.78936 0.89975 0.94306 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.00 37.16 0.37 -1.06 16 2 C 0.04 0.46 5.42 -3.82 -0.02 0.44 16 3 N -0.52 -7.16 5.24 -230.45 -1.21 -8.37 16 4 C 0.03 0.47 5.91 -1.90 -0.01 0.46 16 5 C -0.10 -1.78 6.17 -24.87 -0.15 -1.94 16 6 C -0.09 -1.49 2.99 -89.26 -0.27 -1.76 16 7 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 8 C 0.00 0.09 4.95 -27.88 -0.14 -0.04 16 9 C -0.12 -2.87 6.20 -13.25 -0.08 -2.95 16 10 N -0.42 -10.99 10.46 -10.84 -0.11 -11.10 16 11 C -0.14 -3.93 10.55 -17.92 -0.19 -4.12 16 12 C 0.02 0.41 6.30 -38.78 -0.24 0.17 16 13 C -0.38 -9.62 9.42 -38.22 -0.36 -9.98 16 14 H 0.09 2.05 7.85 -52.49 -0.41 1.64 16 15 C 0.06 1.51 5.50 -17.27 -0.09 1.42 16 16 N -0.77 -18.77 10.18 55.56 0.57 -18.20 16 17 Si 0.93 17.42 29.56 -169.99 -5.03 12.39 16 18 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 20 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 21 S -0.07 -1.64 23.13 -107.50 -2.49 -4.13 16 22 C 0.04 0.57 6.32 -2.75 -0.02 0.55 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.54 7.37 -51.93 -0.38 0.16 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.35 7.83 -51.93 -0.41 -0.06 16 27 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 28 H 0.04 0.52 7.81 -51.93 -0.41 0.11 16 29 H 0.08 1.03 7.80 -51.93 -0.41 0.62 16 30 H 0.08 1.57 7.79 -51.93 -0.40 1.16 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.19 5.50 5.36 -52.49 -0.28 5.22 16 35 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 36 H 0.04 0.50 7.77 -51.93 -0.40 0.10 16 37 H 0.08 1.08 7.68 -51.93 -0.40 0.68 16 LS Contribution 312.04 15.07 4.70 4.70 Total: -1.00 -27.24 312.04 -10.36 -37.59 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.59 Total: 5.92 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.21 Total: -18.80 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.76 Total: -37.68 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.49 Total: -4.13 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.24 -10.36 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260817002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.429 kcal (2) G-P(sol) polarization free energy of solvation -27.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds