Wall clock time and date at job start Mon Mar 30 2020 07:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47005 * 2 1 4 4 C 1.48539 * 110.99796 * 287.39483 * 3 2 1 5 5 C 1.54932 * 103.22489 * 200.27757 * 4 3 2 6 6 C 1.54598 * 102.92273 * 37.41993 * 5 4 3 7 7 H 1.09002 * 110.31174 * 96.95391 * 6 5 4 8 8 C 1.52997 * 110.39179 * 219.08302 * 6 5 4 9 9 C 1.50703 * 109.46824 * 292.14927 * 8 6 5 10 10 N 1.29523 * 124.56228 * 89.70171 * 9 8 6 11 11 C 1.30675 * 117.63212 * 179.75802 * 10 9 8 12 12 C 1.38581 * 113.55155 * 0.52048 * 11 10 9 13 13 C 1.40039 * 126.25881 * 179.76458 * 12 11 10 14 14 H 1.08000 * 120.00642 * 179.97438 * 13 12 11 15 15 C 1.40075 * 119.99643 * 359.95819 * 13 12 11 16 16 N 1.30866 * 120.00171 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99907 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47331 * 89.99888 * 17 15 13 19 19 H 1.48505 * 109.46861 * 209.99656 * 17 15 13 20 20 H 1.48497 * 109.47284 * 329.99606 * 17 15 13 21 21 S 1.70884 * 124.56447 * 270.00045 * 9 8 6 22 22 C 1.47897 * 110.99752 * 170.00361 * 3 2 1 23 23 H 1.09002 * 109.46683 * 300.00039 * 1 2 3 24 24 H 1.08990 * 109.47273 * 60.00030 * 1 2 3 25 25 H 1.08999 * 109.46919 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46683 * 239.99961 * 2 1 3 27 27 H 1.08997 * 109.47079 * 120.00340 * 2 1 3 28 28 H 1.08999 * 110.66816 * 318.71519 * 4 3 2 29 29 H 1.09005 * 110.66488 * 81.84813 * 4 3 2 30 30 H 1.08994 * 110.72994 * 279.05876 * 5 4 3 31 31 H 1.09002 * 110.72359 * 155.77140 * 5 4 3 32 32 H 1.08993 * 109.47324 * 52.14888 * 8 6 5 33 33 H 1.09001 * 109.47249 * 172.15261 * 8 6 5 34 34 H 1.08002 * 123.22072 * 180.28090 * 11 10 9 35 35 H 0.96998 * 119.99756 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.92227 * 26.48731 * 22 3 2 37 37 H 1.08999 * 109.91658 * 265.19118 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8062 2.0250 -1.3233 5 6 2.8087 3.2062 -1.3116 6 6 4.0330 2.6134 -0.5769 7 1 4.7725 2.2621 -1.2965 8 6 4.6531 3.6573 0.3539 9 6 5.2676 4.7611 -0.4678 10 7 4.6407 5.8274 -0.8520 11 6 5.3079 6.7017 -1.5577 12 6 6.6212 6.3313 -1.8001 13 6 7.5673 7.0635 -2.5280 14 1 8.5679 6.6775 -2.6547 15 6 7.2157 8.2966 -3.0920 16 7 6.0030 8.7640 -2.9391 17 14 8.4775 9.2730 -4.0635 18 1 8.4120 8.8811 -5.4943 19 1 8.1874 10.7237 -3.9339 20 1 9.8361 8.9907 -3.5346 21 16 6.8833 4.7710 -1.0242 22 6 3.4784 1.4314 0.2397 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0405 1.3296 -2.1293 29 1 0.7830 2.3897 -1.4137 30 1 2.4007 4.0531 -0.7599 31 1 3.0730 3.4979 -2.3281 32 1 3.8800 4.0728 1.0002 33 1 5.4236 3.1873 0.9650 34 1 4.8761 7.6227 -1.9206 35 1 5.7596 9.6181 -3.3294 36 1 3.9392 0.5014 -0.0932 37 1 3.6756 1.5879 1.3002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260817002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:57 Heat of formation + Delta-G solvation = -0.287957 kcal Electronic energy + Delta-G solvation = -17647.847647 eV Core-core repulsion = 14935.769920 eV Total energy + Delta-G solvation = -2712.077728 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28566 -39.27896 -36.20491 -35.10859 -32.15802 -30.79860 -30.07978 -28.02451 -25.78414 -23.89873 -23.77043 -21.65752 -21.09916 -20.93443 -18.69301 -18.29779 -16.94320 -16.60519 -16.41779 -15.61773 -15.36265 -15.05614 -14.73032 -14.41959 -14.05860 -13.84853 -13.79568 -13.34185 -13.27554 -13.03974 -12.97625 -12.69993 -12.36489 -12.21658 -12.03084 -11.83796 -11.73427 -11.67890 -11.55983 -11.45867 -11.39302 -9.91403 -9.84953 -9.35980 -9.11801 -8.76554 -6.52530 0.58211 1.23848 1.40997 1.51272 1.56555 1.69652 2.13746 2.52808 3.06502 3.11325 3.65961 3.80946 3.88909 4.20305 4.23228 4.33791 4.40424 4.51293 4.63621 4.67800 4.71456 4.77871 4.86877 4.93099 4.96293 5.06280 5.10962 5.14988 5.25889 5.29470 5.35711 5.40993 5.55123 5.83742 5.95334 6.17624 6.23551 6.45137 6.62294 7.86518 8.07756 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.046307 B = 0.003920 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.519675 B = 7141.223384 C = 7439.495855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 N -0.529 5.529 4 C 0.044 3.956 5 C -0.105 4.105 6 C -0.085 4.085 7 H 0.062 0.938 8 C 0.006 3.994 9 C -0.111 4.111 10 N -0.443 5.443 11 C -0.183 4.183 12 C -0.017 4.017 13 C -0.403 4.403 14 H 0.095 0.905 15 C 0.023 3.977 16 N -0.795 5.795 17 Si 1.013 2.987 18 H -0.257 1.257 19 H -0.261 1.261 20 H -0.251 1.251 21 S -0.045 6.045 22 C 0.049 3.951 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.177 0.823 35 H 0.299 0.701 36 H 0.056 0.944 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -11.163 1.438 11.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 N -0.254 5.254 4 C -0.083 4.083 5 C -0.143 4.143 6 C -0.105 4.105 7 H 0.081 0.919 8 C -0.035 4.035 9 C -0.383 4.383 10 N -0.155 5.155 11 C -0.334 4.334 12 C -0.138 4.138 13 C -0.439 4.439 14 H 0.113 0.887 15 C -0.197 4.197 16 N -0.419 5.419 17 Si 0.831 3.169 18 H -0.181 1.181 19 H -0.185 1.185 20 H -0.175 1.175 21 S 0.204 5.796 22 C -0.079 4.079 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.194 0.806 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.990 -11.419 2.144 12.284 hybrid contribution 0.448 1.094 -1.387 1.823 sum -3.542 -10.325 0.757 10.942 Atomic orbital electron populations 1.21710 0.94019 1.02230 1.02000 1.22341 0.97061 0.88267 1.01234 1.64791 1.14083 1.17697 1.28819 1.23187 0.99723 0.95171 0.90235 1.22303 0.95179 0.97655 0.99149 1.21918 0.96806 0.94784 0.96964 0.91935 1.19810 0.98443 0.90583 0.94671 1.25856 0.93581 1.02167 1.16647 1.65408 1.38383 1.01795 1.09914 1.22952 0.92447 1.04217 1.13812 1.23640 0.97858 0.93780 0.98531 1.19438 0.98006 1.02029 1.24477 0.88697 1.27226 0.98584 0.97811 0.96069 1.69541 1.20333 1.18801 1.33235 0.84727 0.77385 0.76793 0.78017 1.18109 1.18534 1.17464 1.82703 1.18154 1.22458 1.56264 1.22867 0.87622 0.96550 1.00877 0.92491 0.93266 0.90706 0.94482 0.89974 0.93380 0.89826 0.92356 0.93786 0.91302 0.90337 0.80640 0.88878 0.92542 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 10.00 71.98 0.72 -1.71 16 2 C 0.04 0.76 5.42 86.31 0.47 1.23 16 3 N -0.53 -13.49 5.24 -883.01 -4.63 -18.12 16 4 C 0.04 1.21 5.91 86.65 0.51 1.72 16 5 C -0.10 -3.61 6.17 31.80 0.20 -3.42 16 6 C -0.08 -2.76 2.99 -9.91 -0.03 -2.79 16 7 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 8 C 0.01 0.23 4.95 29.85 0.15 0.38 16 9 C -0.11 -5.30 6.20 88.45 0.55 -4.75 16 10 N -0.44 -24.06 10.46 -188.22 -1.97 -26.03 16 11 C -0.18 -10.56 10.55 84.95 0.90 -9.66 16 12 C -0.02 -0.93 6.30 22.79 0.14 -0.78 16 13 C -0.40 -20.87 9.42 23.15 0.22 -20.65 16 14 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 15 C 0.02 1.09 5.50 85.28 0.47 1.56 16 16 N -0.79 -39.84 10.18 21.86 0.22 -39.61 16 17 Si 1.01 34.92 29.56 68.60 2.03 36.95 16 18 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 19 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 20 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 21 S -0.05 -2.17 23.13 -56.49 -1.31 -3.48 16 22 C 0.05 1.25 6.32 86.45 0.55 1.80 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 0.88 7.37 -2.39 -0.02 0.87 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.04 0.70 7.83 -2.39 -0.02 0.68 16 27 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 28 H 0.05 1.21 7.81 -2.39 -0.02 1.20 16 29 H 0.08 2.15 7.80 -2.38 -0.02 2.13 16 30 H 0.06 2.28 7.79 -2.39 -0.02 2.26 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.61 8.03 -2.39 -0.02 2.59 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.18 10.62 5.36 -2.91 -0.02 10.60 16 35 H 0.30 13.23 8.30 -92.71 -0.77 12.46 16 36 H 0.06 1.28 7.77 -2.39 -0.02 1.26 16 37 H 0.09 2.12 7.68 -2.39 -0.02 2.10 16 Total: -1.00 -60.37 312.04 0.23 -60.14 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 1.05 Total: 27.23 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 4.84 Total: -37.08 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -6.38 Total: -83.77 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.95 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -1.31 Total: -3.48 kcal Total: -60.37 0.23 -60.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260817002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.857 kcal (2) G-P(sol) polarization free energy of solvation -60.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds