Wall clock time and date at job start Mon Mar 30 2020 07:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.46728 * 2 1 4 4 C 1.48556 * 110.99977 * 290.12265 * 3 2 1 5 5 C 1.54381 * 104.59796 * 200.96048 * 4 3 2 6 6 C 1.54263 * 105.05596 * 23.85764 * 5 4 3 7 7 H 1.09005 * 110.32076 * 241.00079 * 6 5 4 8 8 C 1.50702 * 110.32614 * 118.89729 * 6 5 4 9 9 N 1.29018 * 124.91389 * 121.45056 * 8 6 5 10 10 C 1.31788 * 117.12221 * 179.97438 * 9 8 6 11 11 C 1.50703 * 122.75010 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47064 * 264.99909 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.33640 * 114.49803 * 0.23268 * 10 9 8 21 21 S 1.70973 * 124.91401 * 301.44962 * 8 6 5 22 22 C 1.48561 * 110.99783 * 174.70836 * 3 2 1 23 23 H 1.09001 * 109.47022 * 299.99879 * 1 2 3 24 24 H 1.08998 * 109.47084 * 60.00167 * 1 2 3 25 25 H 1.09005 * 109.46588 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47348 * 239.99900 * 2 1 3 27 27 H 1.08998 * 109.47084 * 119.99832 * 2 1 3 28 28 H 1.09004 * 110.41529 * 82.18401 * 4 3 2 29 29 H 1.09005 * 110.41585 * 319.74063 * 4 3 2 30 30 H 1.08995 * 110.32573 * 264.96103 * 5 4 3 31 31 H 1.08999 * 110.32431 * 142.74518 * 5 4 3 32 32 H 1.09002 * 109.47152 * 145.00001 * 11 10 9 33 33 H 1.09001 * 109.46980 * 25.00102 * 11 10 9 34 34 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 35 35 H 1.08000 * 126.03367 * 179.77036 * 20 10 9 36 36 H 1.08998 * 110.41516 * 40.25886 * 22 3 2 37 37 H 1.08999 * 110.40831 * 277.81402 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7472 2.0460 -1.3022 5 6 2.7452 3.2225 -1.3577 6 6 3.8978 2.8151 -0.4169 7 1 3.9912 3.5313 0.3995 8 6 5.1922 2.7247 -1.1834 9 7 6.2551 3.4071 -0.9207 10 6 7.3044 3.2057 -1.6923 11 6 8.6096 3.9340 -1.4999 12 6 8.6496 5.1402 -2.4024 13 1 7.8133 5.3579 -3.0502 14 6 9.7534 5.9664 -2.4004 15 7 10.7716 5.7016 -1.6112 16 14 9.8027 7.4620 -3.5186 17 1 8.6754 8.3686 -3.1827 18 1 11.0889 8.1795 -3.3291 19 1 9.6831 7.0265 -4.9333 20 6 7.1142 2.3067 -2.6627 21 16 5.4645 1.7030 -2.5269 22 6 3.4992 1.4267 0.1279 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.7221 2.4153 -1.3341 29 1 1.9288 1.3544 -2.1250 30 1 2.2718 4.1377 -1.0022 31 1 3.1157 3.3571 -2.3739 32 1 9.4369 3.2683 -1.7462 33 1 8.6975 4.2540 -0.4616 34 1 11.5483 6.2827 -1.6101 35 1 7.8435 2.0029 -3.3991 36 1 3.9549 0.6382 -0.4709 37 1 3.7932 1.3297 1.1730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260838679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:44 Heat of formation + Delta-G solvation = 36.020165 kcal Electronic energy + Delta-G solvation = -17582.043827 eV Core-core repulsion = 14871.540537 eV Total energy + Delta-G solvation = -2710.503290 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.68779 -38.68736 -34.20809 -33.07874 -30.89173 -29.35859 -28.77561 -27.20366 -24.38127 -23.31060 -22.61757 -21.03114 -20.17929 -19.10432 -16.94576 -16.36091 -16.19436 -15.81138 -14.90604 -14.63312 -14.43728 -13.87730 -13.66407 -13.19924 -12.85258 -12.76375 -12.38930 -12.22257 -11.83583 -11.70135 -11.59479 -11.45648 -11.30192 -11.07376 -11.02242 -10.74072 -10.70732 -10.47827 -9.76704 -9.49010 -9.02821 -8.85436 -8.68970 -8.43587 -7.92159 -6.06044 -4.09316 1.30572 1.90331 2.30947 3.31786 3.35460 3.37950 3.59634 3.72821 4.41980 4.47451 4.51913 4.58084 4.91292 4.96095 5.11789 5.23128 5.26613 5.29725 5.41688 5.46528 5.61302 5.67062 5.71625 5.76611 5.88368 5.92642 6.00235 6.02518 6.12956 6.32654 6.61993 6.81633 7.00983 7.45599 7.54068 7.88997 8.26682 8.53567 8.92922 9.53563 11.04350 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041163 B = 0.003960 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.060989 B = 7068.507154 C = 7219.065164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.038 3.962 3 N -0.510 5.510 4 C 0.032 3.968 5 C -0.119 4.119 6 C -0.012 4.012 7 H 0.109 0.891 8 C 0.048 3.952 9 N -0.454 5.454 10 C 0.112 3.888 11 C 0.084 3.916 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.260 4.260 21 S 0.044 5.956 22 C 0.040 3.960 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.172 0.828 36 H 0.051 0.949 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.928 -11.215 0.827 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 N -0.234 5.234 4 C -0.096 4.096 5 C -0.158 4.158 6 C -0.035 4.035 7 H 0.127 0.873 8 C -0.231 4.231 9 N -0.168 5.168 10 C -0.017 4.017 11 C 0.045 3.955 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.397 4.397 21 S 0.297 5.703 22 C -0.089 4.089 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.189 0.811 36 H 0.069 0.931 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.604 -11.254 1.219 21.777 hybrid contribution 1.403 0.837 -1.267 2.067 sum -17.201 -10.417 -0.048 20.109 Atomic orbital electron populations 1.21742 0.94668 1.01456 1.02513 1.22250 0.96379 0.89324 1.01065 1.65431 1.11053 1.15829 1.31068 1.23168 1.00047 0.95850 0.90511 1.22476 0.94632 0.98818 0.99862 1.20411 0.87646 0.98217 0.97219 0.87303 1.26838 0.98648 0.98645 0.98982 1.66197 0.98946 1.22834 1.28847 1.21253 0.96612 0.94000 0.89880 1.18001 0.84611 0.93986 0.98931 1.20934 1.02478 1.08909 1.22639 0.92705 1.24973 0.95460 0.97936 0.95821 1.69939 1.06552 1.38550 1.38177 0.86557 0.77305 0.82649 0.80940 1.20130 1.21127 1.20184 1.26714 0.98188 1.07078 1.07743 1.83398 1.11235 1.44198 1.31519 1.23245 0.88023 0.95557 1.02059 0.91818 0.92744 0.92399 0.94539 0.90669 0.89805 0.93588 0.89939 0.90598 0.94479 0.94282 0.92682 0.81070 0.93087 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.97 37.16 0.37 -0.71 16 2 C 0.04 0.34 5.53 -3.82 -0.02 0.32 16 3 N -0.51 -5.40 5.37 -229.97 -1.24 -6.63 16 4 C 0.03 0.32 5.74 -2.18 -0.01 0.31 16 5 C -0.12 -1.39 6.55 -25.35 -0.17 -1.56 16 6 C -0.01 -0.17 3.55 -90.39 -0.32 -0.49 16 7 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 8 C 0.05 0.84 5.93 -13.46 -0.08 0.76 16 9 N -0.45 -9.93 10.53 -8.06 -0.08 -10.01 16 10 C 0.11 2.58 5.93 -84.22 -0.50 2.08 16 11 C 0.08 2.25 5.39 -29.03 -0.16 2.10 16 12 C -0.51 -14.66 9.09 -34.44 -0.31 -14.97 16 13 H 0.05 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 16 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.26 -5.15 11.14 29.12 0.32 -4.83 16 21 S 0.04 0.71 22.02 -107.50 -2.37 -1.66 16 22 C 0.04 0.47 6.00 -2.18 -0.01 0.46 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.40 7.26 -51.93 -0.38 0.02 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.32 7.88 -51.93 -0.41 -0.09 16 27 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.08 0.74 7.76 -51.93 -0.40 0.34 16 29 H 0.05 0.46 7.82 -51.93 -0.41 0.05 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.95 7.44 -51.93 -0.39 0.56 16 32 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 35 H 0.17 3.14 8.06 -52.49 -0.42 2.72 16 36 H 0.05 0.62 7.06 -51.93 -0.37 0.25 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 316.78 15.07 4.77 4.77 Total: -1.00 -30.68 316.78 -9.88 -40.55 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.69 Total: -3.05 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.98 Total: -14.91 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.58 Total: -42.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.37 Total: -1.66 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.68 -9.88 -40.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260838679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.574 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds