Wall clock time and date at job start Mon Mar 30 2020 07:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.46728 * 2 1 4 4 C 1.48556 * 110.99977 * 290.12265 * 3 2 1 5 5 C 1.54381 * 104.59796 * 200.96048 * 4 3 2 6 6 C 1.54263 * 105.05596 * 23.85764 * 5 4 3 7 7 H 1.09005 * 110.32076 * 241.00079 * 6 5 4 8 8 C 1.50702 * 110.32614 * 118.89729 * 6 5 4 9 9 N 1.29018 * 124.91389 * 121.45056 * 8 6 5 10 10 C 1.31788 * 117.12221 * 179.97438 * 9 8 6 11 11 C 1.50703 * 122.75010 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47064 * 264.99909 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.33640 * 114.49803 * 0.23268 * 10 9 8 21 21 S 1.70973 * 124.91401 * 301.44962 * 8 6 5 22 22 C 1.48561 * 110.99783 * 174.70836 * 3 2 1 23 23 H 1.09001 * 109.47022 * 299.99879 * 1 2 3 24 24 H 1.08998 * 109.47084 * 60.00167 * 1 2 3 25 25 H 1.09005 * 109.46588 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47348 * 239.99900 * 2 1 3 27 27 H 1.08998 * 109.47084 * 119.99832 * 2 1 3 28 28 H 1.09004 * 110.41529 * 82.18401 * 4 3 2 29 29 H 1.09005 * 110.41585 * 319.74063 * 4 3 2 30 30 H 1.08995 * 110.32573 * 264.96103 * 5 4 3 31 31 H 1.08999 * 110.32431 * 142.74518 * 5 4 3 32 32 H 1.09002 * 109.47152 * 145.00001 * 11 10 9 33 33 H 1.09001 * 109.46980 * 25.00102 * 11 10 9 34 34 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 35 35 H 1.08000 * 126.03367 * 179.77036 * 20 10 9 36 36 H 1.08998 * 110.41516 * 40.25886 * 22 3 2 37 37 H 1.08999 * 110.40831 * 277.81402 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7472 2.0460 -1.3022 5 6 2.7452 3.2225 -1.3577 6 6 3.8978 2.8151 -0.4169 7 1 3.9912 3.5313 0.3995 8 6 5.1922 2.7247 -1.1834 9 7 6.2551 3.4071 -0.9207 10 6 7.3044 3.2057 -1.6923 11 6 8.6096 3.9340 -1.4999 12 6 8.6496 5.1402 -2.4024 13 1 7.8133 5.3579 -3.0502 14 6 9.7534 5.9664 -2.4004 15 7 10.7716 5.7016 -1.6112 16 14 9.8027 7.4620 -3.5186 17 1 8.6754 8.3686 -3.1827 18 1 11.0889 8.1795 -3.3291 19 1 9.6831 7.0265 -4.9333 20 6 7.1142 2.3067 -2.6627 21 16 5.4645 1.7030 -2.5269 22 6 3.4992 1.4267 0.1279 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.7221 2.4153 -1.3341 29 1 1.9288 1.3544 -2.1250 30 1 2.2718 4.1377 -1.0022 31 1 3.1157 3.3571 -2.3739 32 1 9.4369 3.2683 -1.7462 33 1 8.6975 4.2540 -0.4616 34 1 11.5483 6.2827 -1.6101 35 1 7.8435 2.0029 -3.3991 36 1 3.9549 0.6382 -0.4709 37 1 3.7932 1.3297 1.1730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260838679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:43 Heat of formation + Delta-G solvation = 16.026884 kcal Electronic energy + Delta-G solvation = -17582.910801 eV Core-core repulsion = 14871.540537 eV Total energy + Delta-G solvation = -2711.370263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01123 -39.84457 -35.58319 -34.76195 -32.44348 -30.18992 -30.10043 -28.87014 -26.09197 -24.55456 -23.83097 -21.91711 -21.25993 -20.67105 -18.60703 -18.34611 -17.09324 -16.94918 -16.61318 -15.73765 -15.65833 -15.21481 -14.88524 -14.29094 -14.17355 -14.09296 -13.87495 -13.63130 -13.36086 -13.03123 -12.67519 -12.59204 -12.44242 -12.40807 -12.31233 -12.24013 -11.84428 -11.68158 -11.63194 -11.56436 -10.65155 -10.52309 -10.30018 -9.60182 -9.39306 -8.24799 -6.38058 -0.17304 0.48435 0.79230 1.37125 1.40945 1.49027 1.95302 2.39905 2.79059 3.06613 3.30464 3.57075 3.66748 3.98394 4.23085 4.25255 4.32896 4.40881 4.45032 4.48407 4.63291 4.67271 4.69907 4.79415 4.95848 5.01567 5.03841 5.07460 5.13396 5.18461 5.33189 5.39026 5.43758 5.66589 5.79636 6.05751 6.08895 6.70462 6.98014 7.29749 8.85421 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041163 B = 0.003960 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.060989 B = 7068.507154 C = 7219.065164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 N -0.515 5.515 4 C 0.037 3.963 5 C -0.116 4.116 6 C -0.017 4.017 7 H 0.099 0.901 8 C 0.048 3.952 9 N -0.502 5.502 10 C 0.080 3.920 11 C 0.093 3.907 12 C -0.530 4.530 13 H 0.050 0.950 14 C 0.007 3.993 15 N -0.928 5.928 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.275 4.275 21 S 0.146 5.854 22 C 0.046 3.954 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.020 0.980 33 H 0.002 0.998 34 H 0.268 0.732 35 H 0.181 0.819 36 H 0.050 0.950 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.343 -11.931 -0.515 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 N -0.239 5.239 4 C -0.091 4.091 5 C -0.156 4.156 6 C -0.040 4.040 7 H 0.117 0.883 8 C -0.231 4.231 9 N -0.217 5.217 10 C -0.049 4.049 11 C 0.054 3.946 12 C -0.569 4.569 13 H 0.068 0.932 14 C -0.192 4.192 15 N -0.567 5.567 16 Si 0.793 3.207 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.413 4.413 21 S 0.399 5.601 22 C -0.083 4.083 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.198 0.802 36 H 0.068 0.932 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.044 -11.995 -0.129 24.222 hybrid contribution 2.056 0.956 -0.818 2.411 sum -18.987 -11.039 -0.947 21.983 Atomic orbital electron populations 1.21712 0.93444 1.02379 1.02397 1.22347 0.97354 0.88201 1.01398 1.65463 1.09766 1.17174 1.31512 1.23191 1.00365 0.95092 0.90430 1.22493 0.94143 1.00140 0.98793 1.20590 0.86642 0.99525 0.97225 0.88306 1.27483 0.98562 0.97579 0.99482 1.66120 0.99898 1.25398 1.30284 1.20720 0.96024 0.95920 0.92244 1.17639 0.86836 0.93796 0.96359 1.21207 1.02582 1.09988 1.23088 0.93188 1.25918 0.94857 1.01100 0.97286 1.70064 1.07185 1.39884 1.39572 0.85443 0.77622 0.78491 0.79153 1.19679 1.20149 1.18858 1.26911 1.01365 1.06248 1.06752 1.82944 1.06699 1.41479 1.28941 1.23162 0.89170 0.93930 1.02026 0.92273 0.92481 0.91022 0.94210 0.90368 0.88084 0.92964 0.89110 0.91222 0.96184 0.97950 0.92329 0.80203 0.93156 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.97 71.98 0.72 -0.95 16 2 C 0.03 0.52 5.53 86.30 0.48 0.99 16 3 N -0.51 -9.57 5.37 -881.48 -4.73 -14.31 16 4 C 0.04 0.63 5.74 86.45 0.50 1.12 16 5 C -0.12 -2.48 6.55 31.49 0.21 -2.28 16 6 C -0.02 -0.45 3.55 -10.64 -0.04 -0.48 16 7 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 8 C 0.05 1.63 5.93 88.52 0.52 2.16 16 9 N -0.50 -22.51 10.53 -179.40 -1.89 -24.40 16 10 C 0.08 3.84 5.93 41.52 0.25 4.09 16 11 C 0.09 5.29 5.39 29.10 0.16 5.45 16 12 C -0.53 -31.47 9.09 25.60 0.23 -31.24 16 13 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 14 C 0.01 0.41 5.46 84.66 0.46 0.87 16 15 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 16 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 20 C -0.27 -10.87 11.14 66.78 0.74 -10.13 16 21 S 0.15 4.35 22.02 -56.49 -1.24 3.10 16 22 C 0.05 1.01 6.00 86.45 0.52 1.53 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.65 7.26 -2.39 -0.02 0.63 16 25 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.04 0.57 7.88 -2.39 -0.02 0.56 16 27 H 0.08 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.10 1.42 7.76 -2.38 -0.02 1.40 16 29 H 0.05 0.84 7.82 -2.38 -0.02 0.82 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.58 7.44 -2.39 -0.02 1.56 16 32 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.53 16 35 H 0.18 6.58 8.06 -2.91 -0.02 6.56 16 36 H 0.05 1.09 7.06 -2.39 -0.02 1.08 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -68.10 316.78 0.23 -67.87 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.04 Total: 6.03 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 4.74 Total: -28.88 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -6.34 Total: -95.21 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.24 Total: 3.10 kcal Total: -68.10 0.23 -67.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260838679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.894 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds