Wall clock time and date at job start Mon Mar 30 2020 07:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47005 * 2 1 4 4 C 1.48539 * 110.99796 * 287.39483 * 3 2 1 5 5 C 1.54932 * 103.22489 * 200.27757 * 4 3 2 6 6 C 1.54598 * 102.92273 * 37.41993 * 5 4 3 7 7 H 1.09002 * 110.31174 * 96.95391 * 6 5 4 8 8 C 1.50702 * 110.39117 * 219.08242 * 6 5 4 9 9 N 1.29027 * 124.91197 * 237.15303 * 8 6 5 10 10 C 1.31781 * 117.12033 * 179.97438 * 9 8 6 11 11 C 1.50706 * 122.74620 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47304 * 264.99618 * 11 10 9 13 13 H 1.08005 * 119.99839 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99878 * 180.02562 * 12 11 10 15 15 N 1.31505 * 120.00313 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99513 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47225 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46720 * 119.99901 * 16 14 12 19 19 H 1.48498 * 109.46915 * 239.99756 * 16 14 12 20 20 C 1.33634 * 114.50342 * 359.97438 * 10 9 8 21 21 S 1.70972 * 124.91853 * 56.84862 * 8 6 5 22 22 C 1.47897 * 110.99752 * 170.00361 * 3 2 1 23 23 H 1.08999 * 109.46919 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46683 * 300.00039 * 1 2 3 25 25 H 1.08990 * 109.47273 * 60.00030 * 1 2 3 26 26 H 1.09002 * 109.46683 * 239.99961 * 2 1 3 27 27 H 1.08997 * 109.47079 * 120.00340 * 2 1 3 28 28 H 1.08999 * 110.66816 * 318.71519 * 4 3 2 29 29 H 1.09005 * 110.66277 * 81.67794 * 4 3 2 30 30 H 1.08994 * 110.72994 * 279.05876 * 5 4 3 31 31 H 1.09002 * 110.72359 * 155.77140 * 5 4 3 32 32 H 1.08999 * 109.46999 * 25.00117 * 11 10 9 33 33 H 1.09000 * 109.46871 * 144.99448 * 11 10 9 34 34 H 0.96998 * 120.00346 * 180.02562 * 15 14 12 35 35 H 1.08005 * 126.03994 * 180.02562 * 20 10 9 36 36 H 1.08997 * 109.92227 * 26.48731 * 22 3 2 37 37 H 1.09000 * 110.07910 * 265.28360 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8062 2.0250 -1.3233 5 6 2.8087 3.2062 -1.3116 6 6 4.0330 2.6134 -0.5769 7 1 4.7725 2.2621 -1.2965 8 6 4.6438 3.6417 0.3399 9 7 5.8702 4.0395 0.2905 10 6 6.2427 4.9487 1.1687 11 6 7.6432 5.5026 1.2245 12 6 8.4469 4.7351 2.2423 13 1 7.9895 3.9267 2.7935 14 6 9.7661 5.0649 2.4700 15 7 10.3230 6.0496 1.7993 16 14 10.7625 4.1130 3.7312 17 1 9.9107 3.0626 4.3446 18 1 11.9283 3.4789 3.0647 19 1 11.2405 5.0412 4.7872 20 6 5.2767 5.3400 2.0051 21 16 3.8101 4.4555 1.5913 22 6 3.4784 1.4314 0.2397 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0405 1.3296 -2.1293 29 1 0.7821 2.3871 -1.4148 30 1 2.4007 4.0531 -0.7599 31 1 3.0730 3.4979 -2.3281 32 1 8.1111 5.4067 0.2447 33 1 7.6068 6.5544 1.5083 34 1 11.2512 6.2814 1.9592 35 1 5.3763 6.0719 2.7930 36 1 3.9392 0.5014 -0.0932 37 1 3.6787 1.5862 1.2999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260838680.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:46 Heat of formation + Delta-G solvation = 36.316905 kcal Electronic energy + Delta-G solvation = -17582.318247 eV Core-core repulsion = 14871.827825 eV Total energy + Delta-G solvation = -2710.490422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.65335 -38.64684 -34.17432 -33.05564 -30.87022 -29.35778 -28.77628 -27.15098 -24.32629 -23.25969 -22.57362 -20.94320 -20.37445 -19.00764 -16.95472 -16.33797 -16.03813 -15.80555 -14.91458 -14.69947 -14.36498 -13.88493 -13.39875 -13.28778 -12.87806 -12.67177 -12.30122 -12.18559 -11.77540 -11.67926 -11.63315 -11.49106 -11.28745 -11.04498 -11.02984 -10.82571 -10.67723 -10.43810 -9.70765 -9.42930 -8.96269 -8.74437 -8.59241 -8.42460 -7.85012 -6.04389 -4.07225 1.37980 2.00610 2.42462 3.30192 3.37035 3.41971 3.64813 3.79673 4.32751 4.45744 4.52232 4.58116 4.92145 5.02487 5.10965 5.21527 5.28079 5.31184 5.42089 5.48789 5.62270 5.68601 5.70500 5.76551 5.88674 5.95269 6.01372 6.05784 6.11992 6.39391 6.70347 6.85886 7.06712 7.49405 7.57156 7.91287 8.29546 8.59740 8.95721 9.55652 11.06072 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032048 B = 0.004152 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.482412 B = 6741.325931 C = 7042.432436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 N -0.515 5.515 4 C 0.036 3.964 5 C -0.117 4.117 6 C -0.018 4.018 7 H 0.102 0.898 8 C 0.045 3.955 9 N -0.459 5.459 10 C 0.110 3.890 11 C 0.084 3.916 12 C -0.508 4.508 13 H 0.056 0.944 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.267 4.267 21 S 0.072 5.928 22 C 0.043 3.957 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.171 0.829 36 H 0.053 0.947 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.886 -8.626 -4.986 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 N -0.240 5.240 4 C -0.092 4.092 5 C -0.156 4.156 6 C -0.041 4.041 7 H 0.120 0.880 8 C -0.234 4.234 9 N -0.174 5.174 10 C -0.020 4.020 11 C 0.044 3.956 12 C -0.547 4.547 13 H 0.074 0.926 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.405 4.405 21 S 0.325 5.675 22 C -0.086 4.086 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.188 0.812 36 H 0.071 0.929 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.668 -8.505 -4.590 21.914 hybrid contribution 2.049 -0.606 0.190 2.145 sum -17.619 -9.111 -4.400 20.317 Atomic orbital electron populations 1.21728 0.94707 1.01325 1.02528 1.22259 0.96401 0.89191 1.00909 1.64806 1.13690 1.16661 1.28829 1.23269 1.00116 0.95657 0.90143 1.22682 0.93700 0.98289 1.00948 1.20534 0.96975 0.91712 0.94895 0.87957 1.26683 0.93088 1.02898 1.00681 1.66208 1.13582 1.12648 1.24925 1.21192 0.99405 0.91989 0.89404 1.17996 0.83069 0.95743 0.98775 1.21024 0.95684 1.16964 1.21010 0.92598 1.24977 0.97616 0.95268 0.96409 1.69956 1.13251 1.28771 1.41299 0.86451 0.80040 0.79901 0.81156 1.19741 1.20875 1.20891 1.26787 0.94528 1.10275 1.08884 1.83567 1.15978 1.36806 1.31140 1.22984 0.87474 0.96791 1.01360 0.92499 0.91782 0.92807 0.94642 0.90774 0.93526 0.89719 0.90035 0.90194 0.94400 0.94520 0.92837 0.81188 0.92864 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.00 37.16 0.37 -0.72 16 2 C 0.04 0.36 5.42 -3.82 -0.02 0.34 16 3 N -0.52 -5.56 5.24 -230.45 -1.21 -6.76 16 4 C 0.04 0.34 5.91 -1.90 -0.01 0.33 16 5 C -0.12 -1.30 6.57 -24.87 -0.16 -1.46 16 6 C -0.02 -0.25 3.48 -90.41 -0.31 -0.57 16 7 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 8 C 0.05 0.80 5.90 -13.46 -0.08 0.72 16 9 N -0.46 -10.12 10.53 -8.06 -0.08 -10.21 16 10 C 0.11 2.56 5.93 -84.22 -0.50 2.06 16 11 C 0.08 2.26 5.39 -29.03 -0.16 2.10 16 12 C -0.51 -14.67 9.09 -34.44 -0.31 -14.99 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 16 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 C -0.27 -5.39 11.14 29.12 0.32 -5.06 16 21 S 0.07 1.19 22.07 -107.50 -2.37 -1.18 16 22 C 0.04 0.53 6.23 -2.75 -0.02 0.51 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.39 7.36 -51.93 -0.38 0.01 16 26 H 0.04 0.30 7.83 -51.93 -0.41 -0.11 16 27 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 28 H 0.05 0.40 7.81 -51.93 -0.41 0.00 16 29 H 0.08 0.71 7.80 -51.93 -0.40 0.31 16 30 H 0.08 0.97 7.23 -51.93 -0.38 0.59 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.17 3.18 8.06 -52.48 -0.42 2.75 16 36 H 0.05 0.60 7.77 -51.93 -0.40 0.20 16 37 H 0.09 1.20 7.45 -51.93 -0.39 0.81 16 LS Contribution 316.80 15.07 4.77 4.77 Total: -1.00 -31.09 316.80 -9.84 -40.93 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -5.69 Total: -3.32 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.98 Total: -15.14 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.56 Total: -42.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.37 Total: -1.18 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.09 -9.84 -40.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260838680.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.249 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds