Wall clock time and date at job start Mon Mar 30 2020 07:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47005 * 2 1 4 4 C 1.48539 * 110.99796 * 287.39483 * 3 2 1 5 5 C 1.54932 * 103.22489 * 200.27757 * 4 3 2 6 6 C 1.54598 * 102.92273 * 37.41993 * 5 4 3 7 7 H 1.09002 * 110.31174 * 96.95391 * 6 5 4 8 8 C 1.50702 * 110.39117 * 219.08242 * 6 5 4 9 9 N 1.29027 * 124.91197 * 237.15303 * 8 6 5 10 10 C 1.31781 * 117.12033 * 179.97438 * 9 8 6 11 11 C 1.50706 * 122.74620 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47304 * 264.99618 * 11 10 9 13 13 H 1.08005 * 119.99839 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99878 * 180.02562 * 12 11 10 15 15 N 1.31505 * 120.00313 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99513 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47225 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46720 * 119.99901 * 16 14 12 19 19 H 1.48498 * 109.46915 * 239.99756 * 16 14 12 20 20 C 1.33634 * 114.50342 * 359.97438 * 10 9 8 21 21 S 1.70972 * 124.91853 * 56.84862 * 8 6 5 22 22 C 1.47897 * 110.99752 * 170.00361 * 3 2 1 23 23 H 1.08999 * 109.46919 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46683 * 300.00039 * 1 2 3 25 25 H 1.08990 * 109.47273 * 60.00030 * 1 2 3 26 26 H 1.09002 * 109.46683 * 239.99961 * 2 1 3 27 27 H 1.08997 * 109.47079 * 120.00340 * 2 1 3 28 28 H 1.08999 * 110.66816 * 318.71519 * 4 3 2 29 29 H 1.09005 * 110.66277 * 81.67794 * 4 3 2 30 30 H 1.08994 * 110.72994 * 279.05876 * 5 4 3 31 31 H 1.09002 * 110.72359 * 155.77140 * 5 4 3 32 32 H 1.08999 * 109.46999 * 25.00117 * 11 10 9 33 33 H 1.09000 * 109.46871 * 144.99448 * 11 10 9 34 34 H 0.96998 * 120.00346 * 180.02562 * 15 14 12 35 35 H 1.08005 * 126.03994 * 180.02562 * 20 10 9 36 36 H 1.08997 * 109.92227 * 26.48731 * 22 3 2 37 37 H 1.09000 * 110.07910 * 265.28360 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8062 2.0250 -1.3233 5 6 2.8087 3.2062 -1.3116 6 6 4.0330 2.6134 -0.5769 7 1 4.7725 2.2621 -1.2965 8 6 4.6438 3.6417 0.3399 9 7 5.8702 4.0395 0.2905 10 6 6.2427 4.9487 1.1687 11 6 7.6432 5.5026 1.2245 12 6 8.4469 4.7351 2.2423 13 1 7.9895 3.9267 2.7935 14 6 9.7661 5.0649 2.4700 15 7 10.3230 6.0496 1.7993 16 14 10.7625 4.1130 3.7312 17 1 9.9107 3.0626 4.3446 18 1 11.9283 3.4789 3.0647 19 1 11.2405 5.0412 4.7872 20 6 5.2767 5.3400 2.0051 21 16 3.8101 4.4555 1.5913 22 6 3.4784 1.4314 0.2397 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0405 1.3296 -2.1293 29 1 0.7821 2.3871 -1.4148 30 1 2.4007 4.0531 -0.7599 31 1 3.0730 3.4979 -2.3281 32 1 8.1111 5.4067 0.2447 33 1 7.6068 6.5544 1.5083 34 1 11.2512 6.2814 1.9592 35 1 5.3763 6.0719 2.7930 36 1 3.9392 0.5014 -0.0932 37 1 3.6787 1.5862 1.2999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260838680.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:46 Heat of formation + Delta-G solvation = 15.994413 kcal Electronic energy + Delta-G solvation = -17583.199497 eV Core-core repulsion = 14871.827825 eV Total energy + Delta-G solvation = -2711.371671 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96941 -39.82190 -35.56677 -34.73638 -32.42770 -30.19319 -30.08955 -28.84130 -26.06762 -24.53595 -23.74092 -21.74339 -21.52626 -20.59259 -18.61202 -18.36018 -17.01412 -16.87251 -16.61216 -15.71672 -15.57782 -15.41256 -14.63899 -14.38281 -14.29729 -13.93583 -13.62295 -13.57400 -13.40134 -13.04098 -12.75256 -12.55902 -12.43319 -12.38736 -12.31415 -12.27764 -11.84774 -11.67115 -11.58094 -11.54800 -10.65431 -10.48799 -10.23694 -9.47660 -9.35829 -8.24574 -6.37591 -0.12288 0.55854 0.88242 1.37075 1.38115 1.51457 1.98404 2.40217 2.98258 3.04378 3.10317 3.58461 3.66398 4.06958 4.23249 4.28612 4.33398 4.41965 4.45194 4.53965 4.65561 4.69634 4.74987 4.82703 4.92651 5.02149 5.03878 5.07915 5.16293 5.19226 5.35279 5.41184 5.46189 5.67460 5.87839 6.09965 6.10729 6.71345 7.01244 7.30249 8.85960 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032048 B = 0.004152 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.482412 B = 6741.325931 C = 7042.432436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.038 3.962 3 N -0.525 5.525 4 C 0.042 3.958 5 C -0.113 4.113 6 C -0.023 4.023 7 H 0.099 0.901 8 C 0.047 3.953 9 N -0.505 5.505 10 C 0.079 3.921 11 C 0.093 3.907 12 C -0.528 4.528 13 H 0.049 0.951 14 C 0.007 3.993 15 N -0.928 5.928 16 Si 0.970 3.030 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.270 1.270 20 C -0.282 4.282 21 S 0.162 5.838 22 C 0.048 3.952 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.002 0.998 33 H 0.019 0.981 34 H 0.268 0.732 35 H 0.179 0.821 36 H 0.062 0.938 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.931 -10.221 -4.651 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 N -0.250 5.250 4 C -0.085 4.085 5 C -0.152 4.152 6 C -0.046 4.046 7 H 0.117 0.883 8 C -0.231 4.231 9 N -0.220 5.220 10 C -0.051 4.051 11 C 0.054 3.946 12 C -0.566 4.566 13 H 0.067 0.933 14 C -0.192 4.192 15 N -0.567 5.567 16 Si 0.794 3.206 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.196 1.196 20 C -0.420 4.420 21 S 0.416 5.584 22 C -0.081 4.081 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.020 0.980 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.196 0.804 36 H 0.081 0.919 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.742 -10.100 -4.258 24.349 hybrid contribution 2.553 -0.128 0.040 2.557 sum -19.189 -10.228 -4.217 22.150 Atomic orbital electron populations 1.21694 0.93526 1.02215 1.02371 1.22335 0.97296 0.88121 1.01207 1.64822 1.12222 1.18075 1.29857 1.23301 1.00375 0.94966 0.89884 1.22703 0.92698 0.98694 1.01142 1.20756 0.97829 0.91441 0.94604 0.88273 1.27409 0.92196 1.02504 1.01012 1.66136 1.15986 1.13855 1.26035 1.20686 0.98470 0.94122 0.91812 1.17638 0.85684 0.94949 0.96360 1.21264 0.96582 1.17115 1.21667 0.93298 1.25915 0.98675 0.96154 0.98449 1.70072 1.13864 1.30098 1.42694 0.85330 0.78218 0.78567 0.78508 1.19244 1.20087 1.19552 1.26968 0.96304 1.10493 1.08241 1.83185 1.12153 1.34110 1.28924 1.22863 0.88838 0.96432 0.99977 0.91159 0.92569 0.92273 0.93845 0.91023 0.92183 0.88095 0.90675 0.88914 0.97953 0.96260 0.92348 0.80388 0.91925 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 10.00 71.98 0.72 -0.98 16 2 C 0.04 0.57 5.42 86.31 0.47 1.04 16 3 N -0.52 -9.91 5.24 -883.01 -4.63 -14.54 16 4 C 0.04 0.66 5.91 86.65 0.51 1.17 16 5 C -0.11 -2.24 6.57 31.80 0.21 -2.03 16 6 C -0.02 -0.61 3.48 -10.66 -0.04 -0.65 16 7 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 8 C 0.05 1.64 5.90 88.52 0.52 2.16 16 9 N -0.50 -22.84 10.53 -179.40 -1.89 -24.73 16 10 C 0.08 3.82 5.93 41.52 0.25 4.07 16 11 C 0.09 5.33 5.39 29.10 0.16 5.49 16 12 C -0.53 -31.60 9.09 25.60 0.23 -31.36 16 13 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 14 C 0.01 0.38 5.46 84.66 0.46 0.85 16 15 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 16 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 C -0.28 -11.46 11.14 66.77 0.74 -10.71 16 21 S 0.16 5.10 22.07 -56.49 -1.25 3.85 16 22 C 0.05 1.10 6.23 86.45 0.54 1.64 16 23 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.65 7.36 -2.39 -0.02 0.64 16 26 H 0.04 0.60 7.83 -2.39 -0.02 0.58 16 27 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 28 H 0.06 0.81 7.81 -2.39 -0.02 0.79 16 29 H 0.10 1.31 7.80 -2.38 -0.02 1.29 16 30 H 0.07 1.59 7.23 -2.39 -0.02 1.57 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.18 6.72 8.06 -2.91 -0.02 6.69 16 36 H 0.06 1.31 7.77 -2.39 -0.02 1.29 16 37 H 0.07 1.82 7.45 -2.39 -0.02 1.80 16 Total: -1.00 -69.02 316.80 0.36 -68.66 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: 1.04 Total: 5.31 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 4.77 Total: -29.31 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -6.24 Total: -95.93 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.25 Total: 3.85 kcal Total: -69.02 0.36 -68.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260838680.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.657 kcal (2) G-P(sol) polarization free energy of solvation -69.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds