Wall clock time and date at job start Mon Mar 30 2020 07:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46850 * 110.99652 * 2 1 4 4 C 1.53034 * 109.52143 * 185.79846 * 3 2 1 5 5 C 1.53124 * 109.31237 * 300.88200 * 4 3 2 6 6 C 1.53115 * 109.15796 * 57.63280 * 5 4 3 7 7 H 1.09004 * 109.50216 * 62.28828 * 6 5 4 8 8 C 1.53004 * 109.50244 * 182.40069 * 6 5 4 9 9 C 1.50699 * 109.47485 * 184.99978 * 8 6 5 10 10 N 1.28796 * 124.98991 * 89.71864 * 9 8 6 11 11 C 1.33646 * 116.06066 * 179.85333 * 10 9 8 12 12 C 1.41155 * 122.86333 * 180.21230 * 11 10 9 13 13 H 1.08007 * 119.99929 * 174.33954 * 12 11 10 14 14 C 1.39720 * 119.99996 * 354.33154 * 12 11 10 15 15 N 1.31023 * 119.99831 * 6.19932 * 14 12 11 16 16 Si 1.86802 * 119.99895 * 186.19782 * 14 12 11 17 17 H 1.48492 * 109.47177 * 60.00265 * 16 14 12 18 18 H 1.48506 * 109.47186 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47348 * 299.99938 * 16 14 12 20 20 C 1.37701 * 114.27378 * 0.43870 * 11 10 9 21 21 S 1.70991 * 108.83951 * 359.77464 * 20 11 10 22 22 C 1.46843 * 110.99691 * 124.25057 * 2 1 3 23 23 H 1.09003 * 109.46747 * 295.75155 * 1 2 3 24 24 H 1.09002 * 109.46585 * 55.74691 * 1 2 3 25 25 H 1.09000 * 109.47042 * 175.75025 * 1 2 3 26 26 H 1.08999 * 109.42819 * 65.80439 * 3 2 1 27 27 H 1.08994 * 109.49580 * 305.83730 * 3 2 1 28 28 H 1.09004 * 109.50368 * 180.92429 * 4 3 2 29 29 H 1.08996 * 109.50362 * 60.84439 * 4 3 2 30 30 H 1.08997 * 109.52006 * 177.54166 * 5 4 3 31 31 H 1.08996 * 109.51818 * 297.66509 * 5 4 3 32 32 H 1.08996 * 109.47418 * 305.00449 * 8 6 5 33 33 H 1.09007 * 109.46581 * 65.00376 * 8 6 5 34 34 H 0.97001 * 119.99786 * 179.97438 * 15 14 12 35 35 H 1.08000 * 125.57769 * 179.79062 * 20 11 10 36 36 H 1.09003 * 109.46694 * 54.14562 * 22 2 1 37 37 H 1.08997 * 109.46503 * 294.17728 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5182 1.3342 -0.1457 5 6 4.1188 0.5362 1.0149 6 6 3.5181 -0.8722 1.0203 7 1 3.7813 -1.3837 0.0944 8 6 4.0680 -1.6575 2.2127 9 6 3.5732 -3.0795 2.1490 10 7 4.1755 -4.0447 1.5453 11 6 3.5775 -5.2385 1.6046 12 6 4.1136 -6.3947 0.9979 13 1 3.6406 -7.3536 1.1510 14 6 5.2559 -6.2988 0.1992 15 7 5.8998 -5.1611 0.1107 16 14 5.8653 -7.7926 -0.7425 17 1 4.8093 -8.2511 -1.6805 18 1 7.0852 -7.4312 -1.5083 19 1 6.1862 -8.8831 0.2130 20 6 2.3913 -5.2432 2.3040 21 16 2.0845 -3.6633 2.8816 22 6 1.9952 -0.7716 1.1332 23 1 -0.3633 0.4465 0.9257 24 1 -0.3632 0.5785 -0.8495 25 1 -0.3633 -1.0248 -0.0762 26 1 1.7318 1.8604 0.9376 27 1 1.5640 1.9261 -0.8329 28 1 3.9100 2.3513 -0.1292 29 1 3.7820 0.8579 -1.0899 30 1 5.1998 0.4707 0.8910 31 1 3.8897 1.0346 1.9567 32 1 5.1575 -1.6502 2.1814 33 1 3.7281 -1.1957 3.1398 34 1 6.6931 -5.0946 -0.4435 35 1 1.7585 -6.1040 2.4620 36 1 1.5634 -1.7724 1.1230 37 1 1.7324 -0.2724 2.0658 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260846553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:20 Heat of formation + Delta-G solvation = 23.466348 kcal Electronic energy + Delta-G solvation = -18235.882551 eV Core-core repulsion = 15524.834888 eV Total energy + Delta-G solvation = -2711.047664 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.04720 -37.65708 -34.36900 -33.11662 -32.00210 -29.25548 -26.79665 -26.46221 -25.47455 -22.93812 -22.20653 -20.79815 -19.52184 -18.41860 -17.57477 -15.66532 -15.20210 -15.10991 -14.99352 -14.39037 -14.26541 -13.90720 -13.21867 -12.99866 -12.74769 -12.63073 -12.10165 -11.98679 -11.81574 -11.62627 -11.49122 -11.19280 -11.00522 -10.79846 -10.69298 -10.44666 -10.34925 -10.11513 -10.00084 -9.64523 -9.20068 -8.15691 -7.96229 -7.89175 -7.25999 -6.50586 -4.31542 2.35215 2.97582 3.09864 3.11619 3.14585 3.72248 4.03528 4.09133 4.33061 4.91130 4.98303 5.06765 5.26380 5.43298 5.46092 5.50461 5.53830 5.66483 5.68721 5.75714 5.86794 5.93921 5.97328 6.05739 6.09474 6.17525 6.33574 6.38726 6.55959 6.78415 6.91738 7.15248 7.24877 7.27708 7.30308 7.57185 8.22752 8.59108 8.92434 9.65642 10.37014 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022066 B = 0.005701 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.624163 B = 4910.310375 C = 5399.259789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.543 5.543 3 C 0.056 3.944 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.076 4.076 7 H 0.087 0.913 8 C -0.026 4.026 9 C 0.064 3.936 10 N -0.395 5.395 11 C 0.227 3.773 12 C -0.433 4.433 13 H 0.082 0.918 14 C 0.073 3.927 15 N -0.750 5.750 16 Si 0.910 3.090 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.458 4.458 21 S -0.054 6.054 22 C 0.057 3.943 23 H 0.021 0.979 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.274 0.726 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 11.938 -0.005 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.267 5.267 3 C -0.072 4.072 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.096 4.096 7 H 0.105 0.895 8 C -0.068 4.068 9 C -0.220 4.220 10 N -0.108 5.108 11 C 0.106 3.894 12 C -0.468 4.468 13 H 0.100 0.900 14 C -0.150 4.150 15 N -0.373 5.373 16 Si 0.735 3.265 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.191 1.191 20 C -0.597 4.597 21 S 0.194 5.806 22 C -0.071 4.071 23 H 0.040 0.960 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.761 12.283 -0.255 12.848 hybrid contribution 0.204 -1.280 -0.063 1.298 sum -3.557 11.003 -0.317 11.568 Atomic orbital electron populations 1.22327 0.87558 1.02423 0.99818 1.61860 1.07305 1.13181 1.44360 1.22084 0.95843 0.89494 0.99802 1.21570 0.94326 0.99709 0.99790 1.21626 1.00232 0.95302 0.98053 1.21125 0.93881 0.94948 0.99620 0.89472 1.20085 1.01283 0.87754 0.97701 1.27722 0.94250 0.99121 1.00901 1.67355 1.29137 0.99128 1.15202 1.18008 0.88479 0.90373 0.92586 1.18911 1.08893 0.93492 1.25460 0.89960 1.25976 0.95906 0.97001 0.96091 1.70102 1.13378 1.24675 1.29144 0.86347 0.78534 0.81729 0.79922 1.19014 1.20315 1.19069 1.25026 1.08557 0.98806 1.27287 1.82592 1.30253 1.07074 1.60708 1.22326 0.95509 0.98953 0.90266 0.95995 0.91794 0.91157 0.95347 0.91277 0.91844 0.91019 0.91481 0.92432 0.89397 0.91231 0.91557 0.84750 0.89381 0.95270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.59 60.07 0.58 0.91 16 2 N -0.54 -7.93 4.91 -242.96 -1.19 -9.13 16 3 C 0.06 0.68 5.47 -3.83 -0.02 0.66 16 4 C -0.12 -1.37 6.09 -26.65 -0.16 -1.54 16 5 C -0.11 -1.48 5.29 -26.61 -0.14 -1.62 16 6 C -0.08 -1.24 2.34 -90.54 -0.21 -1.45 16 7 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 8 C -0.03 -0.47 5.30 -27.88 -0.15 -0.61 16 9 C 0.06 1.47 6.15 -13.55 -0.08 1.39 16 10 N -0.39 -10.73 8.48 -8.36 -0.07 -10.80 16 11 C 0.23 6.45 6.46 -86.17 -0.56 5.89 16 12 C -0.43 -12.19 9.23 -37.92 -0.35 -12.54 16 13 H 0.08 2.20 7.85 -52.48 -0.41 1.79 16 14 C 0.07 1.92 5.49 -17.34 -0.10 1.83 16 15 N -0.75 -20.43 11.72 55.54 0.65 -19.78 16 16 Si 0.91 19.43 29.56 -169.99 -5.03 14.41 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 20 C -0.46 -12.00 10.98 30.54 0.34 -11.66 16 21 S -0.05 -1.19 21.73 -107.50 -2.34 -3.53 16 22 C 0.06 0.92 4.45 -3.84 -0.02 0.90 16 23 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.27 6.81 8.30 -40.82 -0.34 6.47 16 35 H 0.13 3.39 8.06 -52.49 -0.42 2.97 16 36 H 0.09 1.64 6.21 -51.93 -0.32 1.32 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 310.73 15.07 4.68 4.68 Total: -1.00 -29.92 310.73 -9.95 -39.87 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.78 Total: 2.11 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.87 Total: -17.84 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: -0.61 Total: -39.70 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -2.34 Total: -3.53 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.92 -9.95 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260846553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.337 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds