Wall clock time and date at job start Mon Mar 30 2020 07:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46850 * 110.99652 * 2 1 4 4 C 1.53034 * 109.52143 * 185.79846 * 3 2 1 5 5 C 1.53124 * 109.31237 * 300.88200 * 4 3 2 6 6 C 1.53115 * 109.15796 * 57.63280 * 5 4 3 7 7 H 1.09004 * 109.50216 * 62.28828 * 6 5 4 8 8 C 1.53004 * 109.50244 * 182.40069 * 6 5 4 9 9 C 1.50699 * 109.47485 * 184.99978 * 8 6 5 10 10 N 1.28796 * 124.98991 * 89.71864 * 9 8 6 11 11 C 1.33646 * 116.06066 * 179.85333 * 10 9 8 12 12 C 1.41155 * 122.86333 * 180.21230 * 11 10 9 13 13 H 1.08007 * 119.99929 * 174.33954 * 12 11 10 14 14 C 1.39720 * 119.99996 * 354.33154 * 12 11 10 15 15 N 1.31023 * 119.99831 * 6.19932 * 14 12 11 16 16 Si 1.86802 * 119.99895 * 186.19782 * 14 12 11 17 17 H 1.48492 * 109.47177 * 60.00265 * 16 14 12 18 18 H 1.48506 * 109.47186 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47348 * 299.99938 * 16 14 12 20 20 C 1.37701 * 114.27378 * 0.43870 * 11 10 9 21 21 S 1.70991 * 108.83951 * 359.77464 * 20 11 10 22 22 C 1.46843 * 110.99691 * 124.25057 * 2 1 3 23 23 H 1.09003 * 109.46747 * 295.75155 * 1 2 3 24 24 H 1.09002 * 109.46585 * 55.74691 * 1 2 3 25 25 H 1.09000 * 109.47042 * 175.75025 * 1 2 3 26 26 H 1.08999 * 109.42819 * 65.80439 * 3 2 1 27 27 H 1.08994 * 109.49580 * 305.83730 * 3 2 1 28 28 H 1.09004 * 109.50368 * 180.92429 * 4 3 2 29 29 H 1.08996 * 109.50362 * 60.84439 * 4 3 2 30 30 H 1.08997 * 109.52006 * 177.54166 * 5 4 3 31 31 H 1.08996 * 109.51818 * 297.66509 * 5 4 3 32 32 H 1.08996 * 109.47418 * 305.00449 * 8 6 5 33 33 H 1.09007 * 109.46581 * 65.00376 * 8 6 5 34 34 H 0.97001 * 119.99786 * 179.97438 * 15 14 12 35 35 H 1.08000 * 125.57769 * 179.79062 * 20 11 10 36 36 H 1.09003 * 109.46694 * 54.14562 * 22 2 1 37 37 H 1.08997 * 109.46503 * 294.17728 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5182 1.3342 -0.1457 5 6 4.1188 0.5362 1.0149 6 6 3.5181 -0.8722 1.0203 7 1 3.7813 -1.3837 0.0944 8 6 4.0680 -1.6575 2.2127 9 6 3.5732 -3.0795 2.1490 10 7 4.1755 -4.0447 1.5453 11 6 3.5775 -5.2385 1.6046 12 6 4.1136 -6.3947 0.9979 13 1 3.6406 -7.3536 1.1510 14 6 5.2559 -6.2988 0.1992 15 7 5.8998 -5.1611 0.1107 16 14 5.8653 -7.7926 -0.7425 17 1 4.8093 -8.2511 -1.6805 18 1 7.0852 -7.4312 -1.5083 19 1 6.1862 -8.8831 0.2130 20 6 2.3913 -5.2432 2.3040 21 16 2.0845 -3.6633 2.8816 22 6 1.9952 -0.7716 1.1332 23 1 -0.3633 0.4465 0.9257 24 1 -0.3632 0.5785 -0.8495 25 1 -0.3633 -1.0248 -0.0762 26 1 1.7318 1.8604 0.9376 27 1 1.5640 1.9261 -0.8329 28 1 3.9100 2.3513 -0.1292 29 1 3.7820 0.8579 -1.0899 30 1 5.1998 0.4707 0.8910 31 1 3.8897 1.0346 1.9567 32 1 5.1575 -1.6502 2.1814 33 1 3.7281 -1.1957 3.1398 34 1 6.6931 -5.0946 -0.4435 35 1 1.7585 -6.1040 2.4620 36 1 1.5634 -1.7724 1.1230 37 1 1.7324 -0.2724 2.0658 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260846553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:20 Heat of formation + Delta-G solvation = 4.622891 kcal Electronic energy + Delta-G solvation = -18236.699665 eV Core-core repulsion = 15524.834888 eV Total energy + Delta-G solvation = -2711.864778 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.31071 -39.46615 -35.78473 -34.89442 -33.23427 -31.01151 -28.27287 -27.63530 -27.41135 -24.24227 -23.50786 -22.35122 -20.73134 -20.22706 -19.52306 -17.08938 -16.96985 -16.77793 -16.19822 -15.59079 -15.44044 -15.36735 -14.84906 -14.62374 -14.22021 -13.74892 -13.50148 -13.47053 -13.23109 -13.09861 -13.00621 -12.81883 -12.54010 -12.28891 -12.21644 -11.89932 -11.58064 -11.54988 -11.35123 -11.20249 -11.09247 -9.88323 -9.80873 -9.23124 -9.19862 -8.47226 -6.39591 0.43389 1.13298 1.35923 1.41498 1.49084 1.76897 2.22640 2.37151 3.02953 3.44338 3.55922 3.91081 3.96626 4.04050 4.21086 4.39406 4.46756 4.54719 4.58449 4.60360 4.71360 4.83580 4.89382 4.92391 5.00672 5.03646 5.08315 5.11161 5.14351 5.26418 5.32769 5.41178 5.54061 5.55394 6.15094 6.15625 6.25333 6.54451 6.87275 7.70136 8.42002 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022066 B = 0.005701 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.624163 B = 4910.310375 C = 5399.259789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.565 5.565 3 C 0.055 3.945 4 C -0.114 4.114 5 C -0.108 4.108 6 C -0.068 4.068 7 H 0.045 0.955 8 C -0.026 4.026 9 C 0.071 3.929 10 N -0.442 5.442 11 C 0.198 3.802 12 C -0.475 4.475 13 H 0.080 0.920 14 C 0.028 3.972 15 N -0.781 5.781 16 Si 0.989 3.011 17 H -0.262 1.262 18 H -0.264 1.264 19 H -0.258 1.258 20 C -0.495 4.495 21 S 0.010 5.990 22 C 0.064 3.936 23 H 0.033 0.967 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.281 0.719 35 H 0.132 0.868 36 H 0.055 0.945 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 13.877 0.042 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.290 5.290 3 C -0.072 4.072 4 C -0.152 4.152 5 C -0.146 4.146 6 C -0.088 4.088 7 H 0.064 0.936 8 C -0.068 4.068 9 C -0.213 4.213 10 N -0.156 5.156 11 C 0.075 3.925 12 C -0.509 4.509 13 H 0.098 0.902 14 C -0.191 4.191 15 N -0.404 5.404 16 Si 0.809 3.191 17 H -0.187 1.187 18 H -0.188 1.188 19 H -0.183 1.183 20 C -0.633 4.633 21 S 0.258 5.742 22 C -0.064 4.064 23 H 0.052 0.948 24 H 0.101 0.899 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.073 0.927 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.734 14.243 -0.186 14.726 hybrid contribution 0.099 -1.783 -0.030 1.786 sum -3.635 12.461 -0.216 12.982 Atomic orbital electron populations 1.22350 0.86458 1.02010 1.01246 1.61832 1.08544 1.14847 1.43794 1.22181 0.95823 0.88094 1.01141 1.21586 0.94371 1.00916 0.98308 1.21601 1.00278 0.92973 0.99752 1.21007 0.94592 0.96541 0.96706 0.93628 1.20330 1.01346 0.85093 0.99987 1.28634 0.93933 1.00390 0.98393 1.67370 1.30906 0.99538 1.17787 1.18441 0.89388 0.91423 0.93200 1.19275 1.10541 0.93698 1.27370 0.90176 1.26905 0.95354 1.00435 0.96440 1.70191 1.13775 1.26804 1.29641 0.85163 0.78193 0.77392 0.78327 1.18671 1.18810 1.18255 1.25302 1.08532 1.01317 1.28141 1.82114 1.29116 1.03696 1.59241 1.22132 0.94843 0.97799 0.91667 0.94841 0.89911 0.92668 0.94042 0.89674 0.88851 0.92748 0.91125 0.90252 0.89460 0.88006 0.90877 0.84997 0.92696 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.59 127.69 1.22 1.86 16 2 N -0.57 -15.66 4.91 -922.58 -4.53 -20.19 16 3 C 0.05 1.16 5.47 86.32 0.47 1.63 16 4 C -0.11 -2.39 6.09 30.65 0.19 -2.20 16 5 C -0.11 -2.54 5.29 30.67 0.16 -2.37 16 6 C -0.07 -2.17 2.34 -10.74 -0.03 -2.20 16 7 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 8 C -0.03 -0.89 5.30 29.85 0.16 -0.74 16 9 C 0.07 3.26 6.15 88.55 0.54 3.81 16 10 N -0.44 -24.83 8.48 -180.35 -1.53 -26.36 16 11 C 0.20 11.69 6.46 39.46 0.25 11.94 16 12 C -0.47 -27.83 9.23 23.34 0.22 -27.62 16 13 H 0.08 4.50 7.85 -2.91 -0.02 4.48 16 14 C 0.03 1.52 5.49 85.17 0.47 1.99 16 15 N -0.78 -43.67 11.72 21.79 0.26 -43.41 16 16 Si 0.99 40.44 29.56 68.60 2.03 42.46 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 20 C -0.49 -26.80 10.98 67.69 0.74 -26.06 16 21 S 0.01 0.43 21.73 -56.49 -1.23 -0.80 16 22 C 0.06 1.97 4.45 86.33 0.38 2.36 16 23 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 28 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 3.07 8.14 -2.39 -0.02 3.06 16 33 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 34 H 0.28 14.21 8.30 -92.71 -0.77 13.44 16 35 H 0.13 6.96 8.06 -2.91 -0.02 6.94 16 36 H 0.05 2.04 6.21 -2.39 -0.01 2.03 16 37 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -67.69 310.73 0.82 -66.87 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 1.04 Total: 19.02 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 4.79 Total: -37.59 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -5.80 Total: -89.96 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -1.23 Total: -0.80 kcal Total: -67.69 0.82 -66.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260846553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.494 kcal (2) G-P(sol) polarization free energy of solvation -67.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds