Wall clock time and date at job start Mon Mar 30 2020 07:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46848 * 110.99920 * 2 1 4 4 C 1.53034 * 109.52416 * 174.16285 * 3 2 1 5 5 C 1.53114 * 109.27901 * 59.17885 * 4 3 2 6 6 C 1.53124 * 109.16227 * 302.34608 * 5 4 3 7 7 H 1.09002 * 109.53652 * 297.69710 * 6 5 4 8 8 C 1.52999 * 109.50548 * 177.59853 * 6 5 4 9 9 C 1.50706 * 109.46892 * 175.19958 * 8 6 5 10 10 N 1.28799 * 124.99283 * 90.00022 * 9 8 6 11 11 C 1.33641 * 116.05824 * 179.97438 * 10 9 8 12 12 C 1.41153 * 122.86237 * 180.26431 * 11 10 9 13 13 H 1.08000 * 120.00242 * 173.66309 * 12 11 10 14 14 C 1.39722 * 119.99902 * 353.66314 * 12 11 10 15 15 N 1.31018 * 119.99958 * 6.12622 * 14 12 11 16 16 Si 1.86804 * 120.00007 * 186.12255 * 14 12 11 17 17 H 1.48501 * 109.47034 * 90.00144 * 16 14 12 18 18 H 1.48502 * 109.47090 * 210.00109 * 16 14 12 19 19 H 1.48500 * 109.47147 * 330.00137 * 16 14 12 20 20 C 1.37698 * 114.27680 * 359.97438 * 11 10 9 21 21 S 1.70994 * 108.83880 * 0.02562 * 20 11 10 22 22 C 1.46845 * 110.99833 * 235.79007 * 2 1 3 23 23 H 1.08999 * 109.47125 * 184.21159 * 1 2 3 24 24 H 1.09000 * 109.47197 * 304.21383 * 1 2 3 25 25 H 1.09003 * 109.47219 * 64.20644 * 1 2 3 26 26 H 1.09001 * 109.46045 * 294.17647 * 3 2 1 27 27 H 1.09001 * 109.46577 * 54.14353 * 3 2 1 28 28 H 1.09002 * 109.50459 * 179.11714 * 4 3 2 29 29 H 1.08994 * 109.50432 * 299.19757 * 4 3 2 30 30 H 1.09004 * 109.52583 * 182.44677 * 5 4 3 31 31 H 1.09002 * 109.52981 * 62.25004 * 5 4 3 32 32 H 1.08995 * 109.47609 * 55.19828 * 8 6 5 33 33 H 1.09000 * 109.46724 * 295.19181 * 8 6 5 34 34 H 0.97006 * 119.99665 * 179.97438 * 15 14 12 35 35 H 1.08000 * 125.58200 * 180.02562 * 20 11 10 36 36 H 1.09002 * 109.46087 * 65.82222 * 22 2 1 37 37 H 1.08993 * 109.45287 * 305.84697 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1187 0.5371 -1.0144 6 6 3.5181 -0.8714 -1.0209 7 1 3.7813 -1.3842 -0.0957 8 6 4.0681 -1.6558 -2.2139 9 6 3.5693 -3.0767 -2.1538 10 7 2.4793 -3.5004 -2.6934 11 6 2.2090 -4.7988 -2.5293 12 6 1.0571 -5.4149 -3.0640 13 1 0.9345 -6.4855 -2.9917 14 6 0.0756 -4.6398 -3.6868 15 7 0.2775 -3.3600 -3.8818 16 14 -1.5246 -5.4281 -4.2415 17 1 -2.5190 -5.3569 -3.1410 18 1 -2.0473 -4.7049 -5.4286 19 1 -1.2794 -6.8492 -4.5961 20 6 3.1531 -5.4857 -1.7993 21 16 4.3909 -4.4003 -1.3372 22 6 1.9952 -0.7708 -1.1337 23 1 -0.3633 -1.0249 0.0755 24 1 -0.3633 0.5778 0.8498 25 1 -0.3634 0.4472 -0.9253 26 1 1.7324 1.8608 -0.9376 27 1 1.5634 1.9258 0.8329 28 1 3.9099 2.3513 0.1309 29 1 3.7814 0.8575 1.0908 30 1 5.1997 0.4714 -0.8906 31 1 3.8886 1.0355 -1.9561 32 1 5.1575 -1.6515 -2.1806 33 1 3.7309 -1.1914 -3.1406 34 1 -0.4039 -2.8220 -4.3146 35 1 3.1177 -6.5379 -1.5582 36 1 1.7324 -0.2708 -2.0660 37 1 1.5634 -1.7715 -1.1240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260846565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:22 Heat of formation + Delta-G solvation = 23.585830 kcal Electronic energy + Delta-G solvation = -18467.858486 eV Core-core repulsion = 15756.816003 eV Total energy + Delta-G solvation = -2711.042483 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.98095 -37.62412 -34.31059 -33.10890 -31.92159 -29.19008 -26.80189 -26.37013 -25.48816 -22.72611 -22.16739 -20.77903 -19.38944 -18.53287 -17.54079 -15.53485 -15.17616 -15.08121 -14.92930 -14.27855 -14.21392 -13.89448 -13.18518 -12.94788 -12.62697 -12.50047 -12.24631 -11.85596 -11.78671 -11.56220 -11.24385 -11.20082 -10.99103 -10.78958 -10.70251 -10.46127 -10.28087 -10.10299 -9.91621 -9.64232 -9.23044 -8.02291 -7.95572 -7.89492 -7.27337 -6.52322 -4.32380 2.34894 2.99220 3.05974 3.10504 3.13938 3.73049 4.02405 4.20795 4.33059 4.95717 5.04049 5.09615 5.31299 5.47961 5.51942 5.59719 5.67483 5.70247 5.75698 5.86110 6.01794 6.07305 6.09367 6.12782 6.16367 6.20813 6.35722 6.39073 6.74926 6.77656 6.92256 7.14283 7.28590 7.40096 7.43314 7.56545 8.22550 8.58405 8.91962 9.64749 10.35047 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017437 B = 0.007221 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.389061 B = 3876.728925 C = 5052.519481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.545 5.545 3 C 0.054 3.946 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.074 4.074 7 H 0.078 0.922 8 C -0.027 4.027 9 C 0.062 3.938 10 N -0.395 5.395 11 C 0.226 3.774 12 C -0.433 4.433 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.751 5.751 16 Si 0.908 3.092 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.455 4.455 21 S -0.048 6.048 22 C 0.066 3.934 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.022 0.978 26 H 0.028 0.972 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.271 0.729 35 H 0.135 0.865 36 H 0.034 0.966 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 9.716 4.462 11.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.269 5.269 3 C -0.074 4.074 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.094 4.094 7 H 0.097 0.903 8 C -0.069 4.069 9 C -0.222 4.222 10 N -0.109 5.109 11 C 0.104 3.896 12 C -0.468 4.468 13 H 0.100 0.900 14 C -0.148 4.148 15 N -0.374 5.374 16 Si 0.732 3.268 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.594 4.594 21 S 0.199 5.801 22 C -0.061 4.061 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.153 0.847 36 H 0.052 0.948 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.435 9.907 5.030 11.629 hybrid contribution -1.907 -0.612 -1.363 2.422 sum 1.528 9.295 3.667 10.109 Atomic orbital electron populations 1.22284 0.87552 1.02422 0.99648 1.61927 1.07416 1.12866 1.44711 1.22076 0.95625 0.89915 0.99767 1.21552 0.94578 0.99600 0.99490 1.21644 0.99732 0.95573 0.98357 1.21120 0.94981 0.94764 0.98569 0.90348 1.20097 0.99253 0.88366 0.99230 1.27721 0.95302 0.98250 1.00886 1.67384 1.12276 1.14224 1.17004 1.18010 0.93858 0.85412 0.92287 1.18926 1.00658 0.94813 1.32389 0.89996 1.25944 0.99806 0.94799 0.94241 1.70115 1.32411 1.05782 1.29102 0.86324 0.81561 0.80253 0.78616 1.19526 1.20320 1.18695 1.25064 1.04986 1.02961 1.26360 1.82638 1.31012 1.05995 1.60411 1.22143 0.94437 0.99427 0.90093 0.91191 0.92081 0.95904 0.95363 0.91462 0.91943 0.91199 0.91803 0.92222 0.90757 0.89906 0.91802 0.84744 0.94811 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.59 60.06 0.58 1.01 16 2 N -0.54 -8.76 4.91 -242.96 -1.19 -9.96 16 3 C 0.05 0.71 5.46 -3.83 -0.02 0.69 16 4 C -0.11 -1.35 6.09 -26.65 -0.16 -1.52 16 5 C -0.12 -1.48 5.29 -26.61 -0.14 -1.62 16 6 C -0.07 -1.21 2.34 -90.54 -0.21 -1.42 16 7 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 8 C -0.03 -0.49 5.30 -27.88 -0.15 -0.63 16 9 C 0.06 1.41 6.07 -13.55 -0.08 1.33 16 10 N -0.40 -10.42 7.76 -8.36 -0.06 -10.48 16 11 C 0.23 6.32 6.46 -86.17 -0.56 5.76 16 12 C -0.43 -12.01 9.23 -37.92 -0.35 -12.36 16 13 H 0.08 2.18 7.85 -52.49 -0.41 1.77 16 14 C 0.07 1.92 5.49 -17.34 -0.10 1.83 16 15 N -0.75 -19.90 11.72 55.54 0.65 -19.25 16 16 Si 0.91 19.23 29.56 -169.99 -5.03 14.20 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 20 C -0.45 -11.85 10.98 30.53 0.34 -11.52 16 21 S -0.05 -1.08 23.16 -107.50 -2.49 -3.57 16 22 C 0.07 1.21 4.53 -3.83 -0.02 1.20 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.27 6.60 8.30 -40.82 -0.34 6.26 16 35 H 0.13 3.38 8.06 -52.49 -0.42 2.96 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 2.09 6.84 -51.93 -0.36 1.74 16 LS Contribution 312.04 15.07 4.70 4.70 Total: -1.00 -28.97 312.04 -10.11 -39.08 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.81 Total: 2.51 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -0.87 Total: -17.24 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: -0.61 Total: -39.69 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.49 Total: -3.57 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.97 -10.11 -39.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260846565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.663 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds