Wall clock time and date at job start Mon Mar 30 2020 07:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46848 * 110.99920 * 2 1 4 4 C 1.53034 * 109.52416 * 174.16285 * 3 2 1 5 5 C 1.53114 * 109.27901 * 59.17885 * 4 3 2 6 6 C 1.53124 * 109.16227 * 302.34608 * 5 4 3 7 7 H 1.09002 * 109.53652 * 297.69710 * 6 5 4 8 8 C 1.52999 * 109.50548 * 177.59853 * 6 5 4 9 9 C 1.50706 * 109.46892 * 175.19958 * 8 6 5 10 10 N 1.28799 * 124.99283 * 90.00022 * 9 8 6 11 11 C 1.33641 * 116.05824 * 179.97438 * 10 9 8 12 12 C 1.41153 * 122.86237 * 180.26431 * 11 10 9 13 13 H 1.08000 * 120.00242 * 173.66309 * 12 11 10 14 14 C 1.39722 * 119.99902 * 353.66314 * 12 11 10 15 15 N 1.31018 * 119.99958 * 6.12622 * 14 12 11 16 16 Si 1.86804 * 120.00007 * 186.12255 * 14 12 11 17 17 H 1.48501 * 109.47034 * 90.00144 * 16 14 12 18 18 H 1.48502 * 109.47090 * 210.00109 * 16 14 12 19 19 H 1.48500 * 109.47147 * 330.00137 * 16 14 12 20 20 C 1.37698 * 114.27680 * 359.97438 * 11 10 9 21 21 S 1.70994 * 108.83880 * 0.02562 * 20 11 10 22 22 C 1.46845 * 110.99833 * 235.79007 * 2 1 3 23 23 H 1.08999 * 109.47125 * 184.21159 * 1 2 3 24 24 H 1.09000 * 109.47197 * 304.21383 * 1 2 3 25 25 H 1.09003 * 109.47219 * 64.20644 * 1 2 3 26 26 H 1.09001 * 109.46045 * 294.17647 * 3 2 1 27 27 H 1.09001 * 109.46577 * 54.14353 * 3 2 1 28 28 H 1.09002 * 109.50459 * 179.11714 * 4 3 2 29 29 H 1.08994 * 109.50432 * 299.19757 * 4 3 2 30 30 H 1.09004 * 109.52583 * 182.44677 * 5 4 3 31 31 H 1.09002 * 109.52981 * 62.25004 * 5 4 3 32 32 H 1.08995 * 109.47609 * 55.19828 * 8 6 5 33 33 H 1.09000 * 109.46724 * 295.19181 * 8 6 5 34 34 H 0.97006 * 119.99665 * 179.97438 * 15 14 12 35 35 H 1.08000 * 125.58200 * 180.02562 * 20 11 10 36 36 H 1.09002 * 109.46087 * 65.82222 * 22 2 1 37 37 H 1.08993 * 109.45287 * 305.84697 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1187 0.5371 -1.0144 6 6 3.5181 -0.8714 -1.0209 7 1 3.7813 -1.3842 -0.0957 8 6 4.0681 -1.6558 -2.2139 9 6 3.5693 -3.0767 -2.1538 10 7 2.4793 -3.5004 -2.6934 11 6 2.2090 -4.7988 -2.5293 12 6 1.0571 -5.4149 -3.0640 13 1 0.9345 -6.4855 -2.9917 14 6 0.0756 -4.6398 -3.6868 15 7 0.2775 -3.3600 -3.8818 16 14 -1.5246 -5.4281 -4.2415 17 1 -2.5190 -5.3569 -3.1410 18 1 -2.0473 -4.7049 -5.4286 19 1 -1.2794 -6.8492 -4.5961 20 6 3.1531 -5.4857 -1.7993 21 16 4.3909 -4.4003 -1.3372 22 6 1.9952 -0.7708 -1.1337 23 1 -0.3633 -1.0249 0.0755 24 1 -0.3633 0.5778 0.8498 25 1 -0.3634 0.4472 -0.9253 26 1 1.7324 1.8608 -0.9376 27 1 1.5634 1.9258 0.8329 28 1 3.9099 2.3513 0.1309 29 1 3.7814 0.8575 1.0908 30 1 5.1997 0.4714 -0.8906 31 1 3.8886 1.0355 -1.9561 32 1 5.1575 -1.6515 -2.1806 33 1 3.7309 -1.1914 -3.1406 34 1 -0.4039 -2.8220 -4.3146 35 1 3.1177 -6.5379 -1.5582 36 1 1.7324 -0.2708 -2.0660 37 1 1.5634 -1.7715 -1.1240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260846565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:22 Heat of formation + Delta-G solvation = 5.795275 kcal Electronic energy + Delta-G solvation = -18468.629942 eV Core-core repulsion = 15756.816003 eV Total energy + Delta-G solvation = -2711.813939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34152 -39.40540 -35.78399 -34.88946 -33.19850 -30.94455 -28.37355 -27.66350 -27.39945 -24.11321 -23.52107 -22.33033 -20.63209 -20.36455 -19.47873 -17.06973 -16.96422 -16.75330 -16.21487 -15.58599 -15.48551 -15.31832 -14.86718 -14.56813 -14.12206 -13.81134 -13.62440 -13.44598 -13.27204 -13.10677 -12.88999 -12.74984 -12.60175 -12.30120 -12.21594 -11.88017 -11.57034 -11.54062 -11.35447 -11.16178 -11.10611 -9.84992 -9.81181 -9.28822 -9.21881 -8.47255 -6.38723 0.44953 1.15958 1.34634 1.37885 1.48312 1.78678 2.21428 2.37571 3.00505 3.45280 3.58059 3.90556 3.94781 4.11099 4.21139 4.38700 4.46429 4.52643 4.54032 4.69964 4.72203 4.83025 4.89701 4.91371 4.96130 5.06274 5.09770 5.12321 5.16199 5.26623 5.35639 5.41633 5.55529 5.56213 6.09270 6.16129 6.23911 6.55329 6.88555 7.71146 8.41036 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017437 B = 0.007221 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.389061 B = 3876.728925 C = 5052.519481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.555 5.555 3 C 0.050 3.950 4 C -0.111 4.111 5 C -0.109 4.109 6 C -0.066 4.066 7 H 0.068 0.932 8 C -0.027 4.027 9 C 0.069 3.931 10 N -0.432 5.432 11 C 0.198 3.802 12 C -0.473 4.473 13 H 0.077 0.923 14 C 0.032 3.968 15 N -0.776 5.776 16 Si 0.985 3.015 17 H -0.265 1.265 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.493 4.493 21 S 0.004 5.996 22 C 0.078 3.922 23 H 0.044 0.956 24 H 0.090 0.910 25 H 0.019 0.981 26 H 0.028 0.972 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.278 0.722 35 H 0.131 0.869 36 H 0.017 0.983 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 11.789 4.930 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.280 5.280 3 C -0.077 4.077 4 C -0.148 4.148 5 C -0.147 4.147 6 C -0.087 4.087 7 H 0.087 0.913 8 C -0.069 4.069 9 C -0.215 4.215 10 N -0.146 5.146 11 C 0.076 3.924 12 C -0.507 4.507 13 H 0.096 0.904 14 C -0.188 4.188 15 N -0.399 5.399 16 Si 0.805 3.195 17 H -0.189 1.189 18 H -0.189 1.189 19 H -0.183 1.183 20 C -0.631 4.631 21 S 0.252 5.748 22 C -0.050 4.050 23 H 0.063 0.937 24 H 0.108 0.892 25 H 0.038 0.962 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.149 0.851 36 H 0.036 0.964 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.127 11.981 5.515 13.820 hybrid contribution -2.055 -1.209 -1.449 2.790 sum 2.071 10.772 4.066 11.699 Atomic orbital electron populations 1.22287 0.87371 1.01381 1.00745 1.61953 1.07847 1.14851 1.43316 1.22243 0.96879 0.87962 1.00611 1.21577 0.93282 1.01193 0.98767 1.21631 1.01006 0.92792 0.99234 1.21067 0.93471 0.97034 0.97093 0.91328 1.20355 1.01168 0.85403 0.99933 1.28650 0.94069 1.00241 0.98564 1.67395 1.14185 1.13705 1.19357 1.18434 0.94563 0.86617 0.92810 1.19250 1.02153 0.95078 1.34258 0.90431 1.26811 1.03013 0.95236 0.93736 1.70197 1.33721 1.06983 1.29011 0.85175 0.76557 0.79296 0.78468 1.18944 1.18893 1.18303 1.25299 1.06807 1.03767 1.27234 1.82186 1.28751 1.04176 1.59638 1.21869 0.95910 0.96883 0.90345 0.93663 0.89181 0.96205 0.95376 0.89426 0.88769 0.91351 0.89296 0.91752 0.87347 0.90116 0.91150 0.85110 0.96441 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.59 127.69 1.22 2.14 16 2 N -0.56 -17.50 4.91 -922.59 -4.53 -22.03 16 3 C 0.05 1.19 5.46 86.32 0.47 1.66 16 4 C -0.11 -2.20 6.09 30.64 0.19 -2.01 16 5 C -0.11 -2.42 5.29 30.67 0.16 -2.26 16 6 C -0.07 -2.07 2.34 -10.74 -0.03 -2.09 16 7 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 8 C -0.03 -0.91 5.30 29.85 0.16 -0.76 16 9 C 0.07 3.13 6.07 88.56 0.54 3.67 16 10 N -0.43 -23.61 7.76 -180.35 -1.40 -25.01 16 11 C 0.20 11.56 6.46 39.46 0.25 11.81 16 12 C -0.47 -27.44 9.23 23.34 0.22 -27.22 16 13 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 14 C 0.03 1.69 5.49 85.17 0.47 2.16 16 15 N -0.78 -42.42 11.72 21.79 0.26 -42.17 16 16 Si 0.98 40.18 29.56 68.60 2.03 42.21 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 18 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 20 C -0.49 -26.61 10.98 67.69 0.74 -25.87 16 21 S 0.00 0.17 23.16 -56.49 -1.31 -1.13 16 22 C 0.08 2.90 4.53 86.33 0.39 3.30 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16 25 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.09 1.73 8.09 -2.39 -0.02 1.71 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.28 13.84 8.30 -92.70 -0.77 13.07 16 35 H 0.13 6.90 8.06 -2.91 -0.02 6.88 16 36 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.04 1.95 6.84 -2.39 -0.02 1.94 16 Total: -1.00 -66.12 312.04 0.87 -65.25 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.04 Total: 18.36 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 4.79 Total: -35.47 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -5.67 Total: -89.21 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.31 Total: -1.13 kcal Total: -66.12 0.87 -65.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260846565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.047 kcal (2) G-P(sol) polarization free energy of solvation -66.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds