Wall clock time and date at job start Mon Mar 30 2020 07:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46844 * 111.00297 * 2 1 4 4 C 1.53038 * 109.52314 * 174.15912 * 3 2 1 5 5 C 1.53123 * 109.27669 * 59.18318 * 4 3 2 6 6 C 1.53001 * 109.57270 * 182.40673 * 5 4 3 7 7 C 1.50695 * 109.47307 * 294.71323 * 6 5 4 8 8 N 1.29529 * 124.55823 * 89.70044 * 7 6 5 9 9 C 1.30685 * 117.62704 * 179.76432 * 8 7 6 10 10 C 1.38587 * 113.55238 * 0.51840 * 9 8 7 11 11 C 1.40033 * 126.25287 * 179.76915 * 10 9 8 12 12 H 1.08003 * 119.99610 * 179.97438 * 11 10 9 13 13 C 1.40067 * 120.00295 * 359.95552 * 11 10 9 14 14 N 1.30871 * 119.99927 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00129 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47470 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47288 * 120.00062 * 15 13 11 18 18 H 1.48502 * 109.47271 * 239.99883 * 15 13 11 19 19 S 1.70887 * 124.56520 * 270.00331 * 7 6 5 20 20 C 1.53120 * 109.15831 * 302.34448 * 5 4 3 21 21 C 1.46844 * 110.99853 * 235.79163 * 2 1 3 22 22 H 1.09002 * 109.47401 * 184.20627 * 1 2 3 23 23 H 1.09001 * 109.46874 * 64.20639 * 1 2 3 24 24 H 1.09004 * 109.46970 * 304.20773 * 1 2 3 25 25 H 1.08995 * 109.46425 * 294.18075 * 3 2 1 26 26 H 1.09008 * 109.45740 * 54.14720 * 3 2 1 27 27 H 1.09000 * 109.50747 * 299.24167 * 4 3 2 28 28 H 1.08999 * 109.53552 * 179.14132 * 4 3 2 29 29 H 1.08996 * 109.52209 * 62.25174 * 5 4 3 30 30 H 1.08995 * 109.46955 * 54.71368 * 6 5 4 31 31 H 1.09000 * 109.46843 * 174.71314 * 6 5 4 32 32 H 1.07999 * 123.21787 * 180.28574 * 9 8 7 33 33 H 0.96997 * 119.99638 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.50416 * 297.70785 * 20 5 4 35 35 H 1.09001 * 109.50010 * 177.59436 * 20 5 4 36 36 H 1.09007 * 109.46691 * 305.86028 * 21 2 1 37 37 H 1.09003 * 109.46730 * 65.82297 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 0.1468 5 6 4.1188 0.5368 -1.0144 6 6 5.6363 0.4447 -0.8421 7 6 6.2396 1.8207 -0.9587 8 7 6.4176 2.6315 0.0356 9 6 6.9584 3.7936 -0.2193 10 6 7.2553 3.9841 -1.5596 11 6 7.8330 5.1274 -2.1254 12 1 8.0216 5.1675 -3.1881 13 6 8.1657 6.2190 -1.3133 14 7 7.9372 6.1703 -0.0256 15 14 8.9356 7.7444 -2.0682 16 1 9.0893 7.5486 -3.5321 17 1 8.0612 8.9175 -1.8144 18 1 10.2689 7.9797 -1.4581 19 16 6.7742 2.5242 -2.4214 20 6 3.5181 -0.8716 -1.0209 21 6 1.9952 -0.7707 -1.1337 22 1 -0.3634 -1.0249 0.0754 23 1 -0.3633 0.4472 -0.9253 24 1 -0.3633 0.5778 0.8499 25 1 1.7325 1.8608 -0.9375 26 1 1.5635 1.9256 0.8331 27 1 3.7815 0.8566 1.0906 28 1 3.9106 2.3509 0.1315 29 1 3.8888 1.0354 -1.9560 30 1 5.8660 0.0292 0.1390 31 1 6.0513 -0.2007 -1.6163 32 1 7.1518 4.5358 0.5410 33 1 8.1673 6.9265 0.5367 34 1 3.7813 -1.3838 -0.0955 35 1 3.9098 -1.4303 -1.8709 36 1 1.5633 -1.7715 -1.1244 37 1 1.7324 -0.2708 -2.0661 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260872512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:34 Heat of formation + Delta-G solvation = 10.738250 kcal Electronic energy + Delta-G solvation = -17872.384297 eV Core-core repulsion = 15160.784702 eV Total energy + Delta-G solvation = -2711.599596 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.95700 -37.43498 -34.73514 -33.80836 -30.62295 -29.97897 -28.55344 -25.77796 -24.07990 -22.86761 -22.43116 -21.07371 -19.35074 -18.98508 -16.72119 -16.38053 -15.65998 -14.96095 -14.81652 -14.48037 -14.02896 -13.80247 -13.29808 -13.19960 -12.56354 -12.38026 -12.21220 -12.15094 -11.81214 -11.60249 -11.41069 -11.34866 -11.05953 -10.96576 -10.88418 -10.37907 -10.25663 -9.93497 -9.86187 -9.68399 -9.56664 -8.24897 -7.94317 -7.87509 -7.16243 -6.96228 -4.55815 2.42556 2.89690 2.96480 3.01619 3.24065 3.65129 3.75096 4.04416 4.41269 5.00725 5.04567 5.12650 5.19149 5.29691 5.45595 5.51336 5.66642 5.69786 5.76594 5.80555 5.94510 6.02764 6.08303 6.20147 6.31877 6.38409 6.51449 6.63097 6.73599 6.81203 6.94480 7.16505 7.19927 7.22776 7.47245 7.80911 8.16341 8.37980 8.68031 9.84100 9.85405 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.004371 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.355030 B = 6403.635967 C = 6733.661291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.102 4.102 5 C -0.079 4.079 6 C -0.001 4.001 7 C -0.120 4.120 8 N -0.421 5.421 9 C -0.143 4.143 10 C 0.015 3.985 11 C -0.378 4.378 12 H 0.086 0.914 13 C 0.064 3.936 14 N -0.767 5.767 15 Si 0.933 3.067 16 H -0.258 1.258 17 H -0.269 1.269 18 H -0.269 1.269 19 S -0.068 6.068 20 C -0.112 4.112 21 C 0.058 3.942 22 H 0.064 0.936 23 H 0.021 0.979 24 H 0.065 0.935 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.195 0.805 33 H 0.288 0.712 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 -6.262 -1.747 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.140 4.140 5 C -0.099 4.099 6 C -0.042 4.042 7 C -0.389 4.389 8 N -0.133 5.133 9 C -0.296 4.296 10 C -0.107 4.107 11 C -0.415 4.415 12 H 0.104 0.896 13 C -0.158 4.158 14 N -0.392 5.392 15 Si 0.757 3.243 16 H -0.181 1.181 17 H -0.194 1.194 18 H -0.193 1.193 19 S 0.181 5.819 20 C -0.150 4.150 21 C -0.070 4.070 22 H 0.083 0.917 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.211 0.789 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.038 -6.997 -1.537 10.767 hybrid contribution 0.185 1.765 -0.453 1.832 sum -7.853 -5.232 -1.990 9.644 Atomic orbital electron populations 1.22336 0.88008 1.01737 1.00222 1.61955 1.06915 1.14568 1.43421 1.22168 0.96954 0.88133 0.99928 1.21539 0.92011 1.01863 0.98559 1.21184 0.95222 0.94701 0.98809 1.19633 0.92578 0.90914 1.01073 1.25008 1.21082 1.02340 0.90460 1.65435 1.10750 1.03630 1.33454 1.23116 1.14734 0.95875 0.95891 1.23296 0.98286 0.94201 0.94898 1.19054 1.30196 0.96234 0.95993 0.89593 1.26104 0.94541 1.00596 0.94586 1.69489 1.33323 1.31059 1.05300 0.85826 0.79063 0.79120 0.80339 1.18114 1.19364 1.19349 1.82989 1.66263 1.15038 1.17600 1.21665 0.93614 0.97626 1.02063 1.22072 0.96150 0.97539 0.91248 0.91707 0.96042 0.91584 0.95298 0.91199 0.91537 0.90268 0.91944 0.91458 0.92487 0.78923 0.90042 0.91187 0.91817 0.91289 0.95219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 60.07 0.58 0.85 16 2 N -0.54 -7.41 4.91 -242.96 -1.19 -8.60 16 3 C 0.06 0.84 5.46 -3.83 -0.02 0.82 16 4 C -0.10 -1.78 5.13 -26.65 -0.14 -1.91 16 5 C -0.08 -1.33 2.24 -90.49 -0.20 -1.53 16 6 C 0.00 -0.01 5.27 -27.89 -0.15 -0.16 16 7 C -0.12 -2.82 5.89 -13.25 -0.08 -2.90 16 8 N -0.42 -11.00 9.77 -10.84 -0.11 -11.10 16 9 C -0.14 -3.94 10.55 -17.91 -0.19 -4.12 16 10 C 0.01 0.39 6.30 -38.78 -0.24 0.15 16 11 C -0.38 -9.65 9.42 -38.22 -0.36 -10.01 16 12 H 0.09 2.07 7.85 -52.48 -0.41 1.66 16 13 C 0.06 1.52 5.50 -17.28 -0.09 1.42 16 14 N -0.77 -18.78 10.18 55.56 0.57 -18.22 16 15 Si 0.93 17.43 29.56 -169.99 -5.03 12.41 16 16 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 17 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 18 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 19 S -0.07 -1.63 23.13 -107.50 -2.49 -4.11 16 20 C -0.11 -1.52 5.38 -26.65 -0.14 -1.67 16 21 C 0.06 0.74 5.46 -3.84 -0.02 0.72 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 24 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.99 8.09 -51.92 -0.42 0.57 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.64 6.95 -51.93 -0.36 1.28 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.19 5.50 5.36 -52.49 -0.28 5.21 16 33 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 309.23 15.07 4.66 4.66 Total: -1.00 -27.36 309.23 -10.32 -37.68 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.68 Total: 5.63 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -1.06 Total: -18.35 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.73 Total: -37.92 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.49 Total: -4.11 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.36 -10.32 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.421 kcal (2) G-P(sol) polarization free energy of solvation -27.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds