Wall clock time and date at job start Mon Mar 30 2020 07:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46844 * 111.00297 * 2 1 4 4 C 1.53038 * 109.52314 * 174.15912 * 3 2 1 5 5 C 1.53123 * 109.27669 * 59.18318 * 4 3 2 6 6 C 1.53001 * 109.57270 * 182.40673 * 5 4 3 7 7 C 1.50695 * 109.47307 * 294.71323 * 6 5 4 8 8 N 1.29529 * 124.55823 * 89.70044 * 7 6 5 9 9 C 1.30685 * 117.62704 * 179.76432 * 8 7 6 10 10 C 1.38587 * 113.55238 * 0.51840 * 9 8 7 11 11 C 1.40033 * 126.25287 * 179.76915 * 10 9 8 12 12 H 1.08003 * 119.99610 * 179.97438 * 11 10 9 13 13 C 1.40067 * 120.00295 * 359.95552 * 11 10 9 14 14 N 1.30871 * 119.99927 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00129 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47470 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47288 * 120.00062 * 15 13 11 18 18 H 1.48502 * 109.47271 * 239.99883 * 15 13 11 19 19 S 1.70887 * 124.56520 * 270.00331 * 7 6 5 20 20 C 1.53120 * 109.15831 * 302.34448 * 5 4 3 21 21 C 1.46844 * 110.99853 * 235.79163 * 2 1 3 22 22 H 1.09002 * 109.47401 * 184.20627 * 1 2 3 23 23 H 1.09001 * 109.46874 * 64.20639 * 1 2 3 24 24 H 1.09004 * 109.46970 * 304.20773 * 1 2 3 25 25 H 1.08995 * 109.46425 * 294.18075 * 3 2 1 26 26 H 1.09008 * 109.45740 * 54.14720 * 3 2 1 27 27 H 1.09000 * 109.50747 * 299.24167 * 4 3 2 28 28 H 1.08999 * 109.53552 * 179.14132 * 4 3 2 29 29 H 1.08996 * 109.52209 * 62.25174 * 5 4 3 30 30 H 1.08995 * 109.46955 * 54.71368 * 6 5 4 31 31 H 1.09000 * 109.46843 * 174.71314 * 6 5 4 32 32 H 1.07999 * 123.21787 * 180.28574 * 9 8 7 33 33 H 0.96997 * 119.99638 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.50416 * 297.70785 * 20 5 4 35 35 H 1.09001 * 109.50010 * 177.59436 * 20 5 4 36 36 H 1.09007 * 109.46691 * 305.86028 * 21 2 1 37 37 H 1.09003 * 109.46730 * 65.82297 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 0.1468 5 6 4.1188 0.5368 -1.0144 6 6 5.6363 0.4447 -0.8421 7 6 6.2396 1.8207 -0.9587 8 7 6.4176 2.6315 0.0356 9 6 6.9584 3.7936 -0.2193 10 6 7.2553 3.9841 -1.5596 11 6 7.8330 5.1274 -2.1254 12 1 8.0216 5.1675 -3.1881 13 6 8.1657 6.2190 -1.3133 14 7 7.9372 6.1703 -0.0256 15 14 8.9356 7.7444 -2.0682 16 1 9.0893 7.5486 -3.5321 17 1 8.0612 8.9175 -1.8144 18 1 10.2689 7.9797 -1.4581 19 16 6.7742 2.5242 -2.4214 20 6 3.5181 -0.8716 -1.0209 21 6 1.9952 -0.7707 -1.1337 22 1 -0.3634 -1.0249 0.0754 23 1 -0.3633 0.4472 -0.9253 24 1 -0.3633 0.5778 0.8499 25 1 1.7325 1.8608 -0.9375 26 1 1.5635 1.9256 0.8331 27 1 3.7815 0.8566 1.0906 28 1 3.9106 2.3509 0.1315 29 1 3.8888 1.0354 -1.9560 30 1 5.8660 0.0292 0.1390 31 1 6.0513 -0.2007 -1.6163 32 1 7.1518 4.5358 0.5410 33 1 8.1673 6.9265 0.5367 34 1 3.7813 -1.3838 -0.0955 35 1 3.9098 -1.4303 -1.8709 36 1 1.5633 -1.7715 -1.1244 37 1 1.7324 -0.2708 -2.0661 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260872512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:33 Heat of formation + Delta-G solvation = -5.389251 kcal Electronic energy + Delta-G solvation = -17873.083638 eV Core-core repulsion = 15160.784702 eV Total energy + Delta-G solvation = -2712.298937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23862 -39.26696 -36.32024 -35.38342 -31.84887 -31.61415 -30.18168 -27.16167 -25.73233 -24.24177 -23.89954 -22.50288 -20.97412 -20.54222 -18.57558 -18.30111 -16.79911 -16.56985 -16.00493 -15.60540 -15.50102 -15.30756 -14.87134 -14.68620 -14.18881 -13.86045 -13.68704 -13.31653 -13.27497 -13.14463 -12.91530 -12.88167 -12.55999 -12.28342 -12.08730 -11.92699 -11.66695 -11.57848 -11.42374 -11.24205 -11.13396 -9.90620 -9.84981 -9.29126 -9.11311 -8.76704 -6.52527 0.58021 1.23729 1.40920 1.50180 1.57267 1.69871 2.13605 2.52604 3.01681 3.11160 3.82178 3.86750 3.91660 4.21358 4.28003 4.35243 4.48394 4.55475 4.62526 4.73497 4.74745 4.79399 4.84903 4.92475 4.98974 5.00617 5.09037 5.15219 5.23896 5.28191 5.40345 5.55825 5.56972 5.83830 6.10777 6.18798 6.23561 6.45350 6.62300 7.86127 8.07914 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.004371 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.355030 B = 6403.635967 C = 6733.661291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.554 5.554 3 C 0.063 3.937 4 C -0.096 4.096 5 C -0.072 4.072 6 C -0.001 4.001 7 C -0.108 4.108 8 N -0.443 5.443 9 C -0.183 4.183 10 C -0.018 4.018 11 C -0.404 4.404 12 H 0.094 0.906 13 C 0.023 3.977 14 N -0.795 5.795 15 Si 1.013 2.987 16 H -0.251 1.251 17 H -0.260 1.260 18 H -0.259 1.259 19 S -0.047 6.047 20 C -0.104 4.104 21 C 0.057 3.943 22 H 0.083 0.917 23 H 0.024 0.976 24 H 0.070 0.930 25 H 0.023 0.977 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.178 0.822 33 H 0.299 0.701 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 -7.060 -2.859 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.065 4.065 4 C -0.135 4.135 5 C -0.092 4.092 6 C -0.043 4.043 7 C -0.380 4.380 8 N -0.155 5.155 9 C -0.334 4.334 10 C -0.139 4.139 11 C -0.441 4.441 12 H 0.112 0.888 13 C -0.196 4.196 14 N -0.420 5.420 15 Si 0.831 3.169 16 H -0.174 1.174 17 H -0.184 1.184 18 H -0.184 1.184 19 S 0.202 5.798 20 C -0.142 4.142 21 C -0.070 4.070 22 H 0.102 0.898 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.194 0.806 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.730 -7.800 -2.630 11.999 hybrid contribution 0.359 1.945 -0.072 1.979 sum -8.371 -5.855 -2.702 10.567 Atomic orbital electron populations 1.22412 0.86120 1.03149 1.00618 1.61958 1.08669 1.13196 1.44036 1.22004 0.95108 0.89562 0.99802 1.21403 0.94003 0.99416 0.98632 1.21094 0.93613 0.96896 0.97610 1.19834 0.94061 0.88427 1.01939 1.25893 1.18805 1.03356 0.89907 1.65431 1.11691 1.03806 1.34583 1.22963 1.17423 0.96720 0.96322 1.23644 0.99077 0.95885 0.95287 1.19458 1.30931 0.96896 0.96768 0.88770 1.27214 0.94228 1.03446 0.94738 1.69547 1.33174 1.32477 1.06781 0.84681 0.78229 0.74428 0.79559 1.17394 1.18403 1.18365 1.82718 1.66090 1.13743 1.17219 1.21616 0.94351 0.95095 1.03123 1.22139 0.95362 0.98712 0.90821 0.89786 0.95717 0.91140 0.95908 0.90807 0.92289 0.94388 0.93231 0.91257 0.90378 0.80614 0.88897 0.90964 0.89756 0.88685 0.95354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.59 127.69 1.22 1.70 16 2 N -0.55 -13.89 4.91 -922.58 -4.53 -18.42 16 3 C 0.06 1.87 5.46 86.33 0.47 2.34 16 4 C -0.10 -3.41 5.13 30.65 0.16 -3.26 16 5 C -0.07 -2.37 2.24 -10.71 -0.02 -2.39 16 6 C 0.00 -0.06 5.27 29.85 0.16 0.10 16 7 C -0.11 -5.17 5.89 88.45 0.52 -4.65 16 8 N -0.44 -24.08 9.77 -188.21 -1.84 -25.92 16 9 C -0.18 -10.59 10.55 84.95 0.90 -9.70 16 10 C -0.02 -0.98 6.30 22.79 0.14 -0.83 16 11 C -0.40 -21.05 9.42 23.15 0.22 -20.83 16 12 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 13 C 0.02 1.11 5.50 85.28 0.47 1.58 16 14 N -0.80 -39.98 10.18 21.86 0.22 -39.76 16 15 Si 1.01 35.10 29.56 68.60 2.03 37.12 16 16 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 17 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 18 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 19 S -0.05 -2.28 23.13 -56.49 -1.31 -3.58 16 20 C -0.10 -2.56 5.38 30.65 0.16 -2.40 16 21 C 0.06 1.29 5.46 86.33 0.47 1.76 16 22 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.07 1.28 8.09 -2.38 -0.02 1.27 16 25 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 2.08 8.09 -2.38 -0.02 2.07 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.04 1.64 6.95 -2.39 -0.02 1.62 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.18 10.66 5.36 -2.91 -0.02 10.64 16 33 H 0.30 13.22 8.30 -92.71 -0.77 12.45 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.70 8.12 -2.38 -0.02 1.68 16 37 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -61.22 309.23 0.49 -60.73 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 1.04 Total: 26.39 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 4.87 Total: -36.57 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -6.15 Total: -84.09 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 2.03 Total: 37.12 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -1.31 Total: -3.58 kcal Total: -61.22 0.49 -60.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.340 kcal (2) G-P(sol) polarization free energy of solvation -61.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds