Wall clock time and date at job start Mon Mar 30 2020 07:28:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.47851 * 111.00051 * 2 1
4 4 C 1.54904 * 104.89485 * 213.58070 * 3 2 1
5 5 C 1.55435 * 101.52115 * 37.06469 * 4 3 2
6 6 C 1.47443 * 111.00142 * 239.15973 * 2 1 3
7 7 H 1.09000 * 109.88573 * 242.66189 * 6 2 1
8 8 C 1.53000 * 109.88923 * 3.84682 * 6 2 1
9 9 C 1.50703 * 109.47133 * 183.57149 * 8 6 2
10 10 N 1.29022 * 124.91369 * 84.77017 * 9 8 6
11 11 C 1.31785 * 117.12114 * 179.81335 * 10 9 8
12 12 C 1.50701 * 122.75118 * 180.22340 * 11 10 9
13 13 C 1.50708 * 109.46822 * 265.24488 * 12 11 10
14 14 H 1.07994 * 119.99933 * 359.97438 * 13 12 11
15 15 C 1.37881 * 119.99610 * 180.02562 * 13 12 11
16 16 N 1.31515 * 120.00014 * 359.97438 * 15 13 12
17 17 Si 1.86792 * 119.99947 * 179.97438 * 15 13 12
18 18 H 1.48507 * 109.47202 * 59.99965 * 17 15 13
19 19 H 1.48502 * 109.47082 * 179.97438 * 17 15 13
20 20 H 1.48502 * 109.47184 * 300.00028 * 17 15 13
21 21 C 1.33639 * 114.49992 * 0.47111 * 11 10 9
22 22 S 1.70977 * 124.91303 * 265.06951 * 9 8 6
23 23 H 1.08999 * 109.47137 * 61.95813 * 1 2 3
24 24 H 1.09005 * 109.46915 * 181.95118 * 1 2 3
25 25 H 1.08997 * 109.47383 * 301.95111 * 1 2 3
26 26 H 1.09003 * 110.36988 * 332.46790 * 3 2 1
27 27 H 1.08991 * 110.37199 * 94.69078 * 3 2 1
28 28 H 1.09001 * 110.99033 * 155.21388 * 4 3 2
29 29 H 1.08997 * 110.99103 * 279.03214 * 4 3 2
30 30 H 1.09001 * 110.69355 * 205.97718 * 5 4 3
31 31 H 1.08998 * 110.69263 * 82.75715 * 5 4 3
32 32 H 1.08997 * 109.47086 * 303.57115 * 8 6 2
33 33 H 1.09007 * 109.46639 * 63.57301 * 8 6 2
34 34 H 1.08999 * 109.46765 * 25.23766 * 12 11 10
35 35 H 1.08999 * 109.47535 * 145.24169 * 12 11 10
36 36 H 0.97005 * 120.00177 * 180.02562 * 16 15 13
37 37 H 1.08006 * 126.03554 * 179.71784 * 21 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9989 1.3803 0.0000
4 6 3.3059 1.3051 -0.8280
5 6 2.9159 0.2822 -1.9315
6 6 1.9974 -0.7057 -1.1819
7 1 2.5698 -1.5784 -0.8674
8 6 0.8438 -1.1356 -2.0903
9 6 1.3868 -1.9313 -3.2493
10 7 1.6335 -3.1975 -3.2247
11 6 2.1037 -3.7395 -4.3301
12 6 2.4306 -5.2062 -4.4437
13 6 3.8953 -5.4179 -4.1590
14 1 4.5263 -4.5747 -3.9201
15 6 4.4299 -6.6881 -4.2046
16 7 3.6615 -7.7148 -4.4960
17 14 6.2454 -6.9504 -3.8525
18 1 6.5564 -6.4794 -2.4788
19 1 6.5675 -8.3958 -3.9644
20 1 7.0557 -6.1848 -4.8336
21 6 2.2717 -2.8810 -5.3403
22 16 1.7719 -1.2853 -4.7848
23 1 -0.3633 0.4831 -0.9070
24 1 -0.3633 -1.0271 0.0350
25 1 -0.3634 0.5438 0.8719
26 1 1.2889 2.0593 -0.4724
27 1 2.2128 1.7046 1.0183
28 1 3.5503 2.2752 -1.2608
29 1 4.1309 0.9305 -0.2221
30 1 3.8001 -0.2279 -2.3137
31 1 2.3744 0.7747 -2.7392
32 1 0.1447 -1.7504 -1.5234
33 1 0.3285 -0.2516 -2.4661
34 1 1.8356 -5.7679 -3.7236
35 1 2.2027 -5.5523 -5.4519
36 1 4.0374 -8.6085 -4.5278
37 1 2.6479 -3.1225 -6.3235
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260890176.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:28:57
Heat of formation + Delta-G solvation = 21.680900 kcal
Electronic energy + Delta-G solvation = -17871.739405 eV
Core-core repulsion = 15160.614319 eV
Total energy + Delta-G solvation = -2711.125087 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 266.115 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.03498 -40.10760 -35.49508 -33.98372 -33.07433 -31.51052 -29.17400 -27.44985
-26.52002 -25.77107 -23.49513 -22.15452 -20.92875 -20.16160 -18.62762 -18.44970
-17.23361 -16.72755 -16.63254 -16.11625 -15.49481 -15.15850 -14.83817 -14.56157
-14.39790 -14.02026 -13.67796 -13.51489 -13.27676 -13.19498 -12.88307 -12.61107
-12.39575 -12.32588 -12.28248 -12.00001 -11.88737 -11.70456 -11.57809 -11.56725
-10.64432 -10.48051 -10.26281 -9.53053 -9.18089 -8.24156 -6.37089 -0.13195
0.53554 0.81276 1.36852 1.40675 1.48653 1.98473 2.40397 2.89478
3.07282 3.34633 3.62639 3.74653 3.83327 4.03090 4.27636 4.33739
4.43169 4.45283 4.55953 4.60719 4.64002 4.67701 4.76297 4.92330
5.01310 5.04744 5.09823 5.15930 5.20429 5.33213 5.34992 5.46408
5.67353 5.98986 6.09973 6.14049 6.71335 7.02077 7.30604 8.86033
Molecular weight = 266.11amu
Principal moments of inertia in cm(-1)
A = 0.022097 B = 0.004938 C = 0.004581
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1266.848609 B = 5668.977376 C = 6110.299194
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.009 3.991
2 N -0.543 5.543
3 C 0.041 3.959
4 C -0.124 4.124
5 C -0.140 4.140
6 C 0.084 3.916
7 H 0.057 0.943
8 C -0.049 4.049
9 C 0.044 3.956
10 N -0.501 5.501
11 C 0.080 3.920
12 C 0.093 3.907
13 C -0.528 4.528
14 H 0.049 0.951
15 C 0.008 3.992
16 N -0.928 5.928
17 Si 0.967 3.033
18 H -0.273 1.273
19 H -0.276 1.276
20 H -0.264 1.264
21 C -0.276 4.276
22 S 0.149 5.851
23 H 0.046 0.954
24 H 0.066 0.934
25 H 0.081 0.919
26 H 0.063 0.937
27 H 0.088 0.912
28 H 0.096 0.904
29 H 0.068 0.932
30 H 0.059 0.941
31 H 0.082 0.918
32 H 0.097 0.903
33 H 0.112 0.888
34 H 0.001 0.999
35 H 0.020 0.980
36 H 0.268 0.732
37 H 0.179 0.821
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.010 21.728 4.763 22.801
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 N -0.267 5.267
3 C -0.087 4.087
4 C -0.162 4.162
5 C -0.179 4.179
6 C -0.026 4.026
7 H 0.075 0.925
8 C -0.091 4.091
9 C -0.235 4.235
10 N -0.217 5.217
11 C -0.049 4.049
12 C 0.053 3.947
13 C -0.567 4.567
14 H 0.067 0.933
15 C -0.190 4.190
16 N -0.567 5.567
17 Si 0.791 3.209
18 H -0.198 1.198
19 H -0.201 1.201
20 H -0.188 1.188
21 C -0.414 4.414
22 S 0.403 5.597
23 H 0.064 0.936
24 H 0.085 0.915
25 H 0.099 0.901
26 H 0.081 0.919
27 H 0.106 0.894
28 H 0.115 0.885
29 H 0.086 0.914
30 H 0.077 0.923
31 H 0.100 0.900
32 H 0.115 0.885
33 H 0.130 0.870
34 H 0.020 0.980
35 H 0.038 0.962
36 H 0.076 0.924
37 H 0.196 0.804
Dipole moment (debyes) X Y Z Total
from point charges -5.023 21.991 5.220 23.154
hybrid contribution 0.774 -1.594 -0.755 1.926
sum -4.249 20.397 4.464 21.308
Atomic orbital electron populations
1.22694 0.86744 1.02559 1.01848 1.63734 1.09345 1.15437 1.38198
1.23163 0.95738 0.88554 1.01196 1.22745 0.97631 0.99597 0.96225
1.22964 0.99364 0.96961 0.98606 1.22253 0.94408 0.97165 0.88819
0.92500 1.21010 0.98350 0.98506 0.91201 1.27372 1.02973 0.92790
1.00392 1.66089 1.15982 1.11089 1.28541 1.20698 0.97158 0.99417
0.87677 1.17636 0.96059 0.84806 0.96167 1.21193 0.93949 0.93231
1.48289 0.93287 1.25890 1.03148 0.95416 0.94590 1.70063 1.37758
0.99665 1.49238 0.85474 0.78980 0.77471 0.78979 1.19835 1.20087
1.18831 1.26886 1.13361 0.95520 1.05645 1.82959 1.59861 1.09689
1.07231 0.93598 0.91547 0.90073 0.91905 0.89394 0.88530 0.91366
0.92260 0.89971 0.88454 0.87027 0.98028 0.96227 0.92359 0.80373
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.16 8.26 127.69 1.05 1.21 16
2 N -0.54 -11.65 5.44 -886.53 -4.83 -16.47 16
3 C 0.04 0.65 6.72 86.77 0.58 1.23 16
4 C -0.12 -2.09 7.10 32.08 0.23 -1.87 16
5 C -0.14 -3.04 5.80 31.88 0.19 -2.86 16
6 C 0.08 2.13 3.46 45.26 0.16 2.28 16
7 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
8 C -0.05 -1.23 3.92 29.85 0.12 -1.11 16
9 C 0.04 1.46 6.16 88.52 0.54 2.01 16
10 N -0.50 -22.31 10.53 -179.40 -1.89 -24.20 16
11 C 0.08 3.82 5.93 41.52 0.25 4.07 16
12 C 0.09 5.28 5.39 29.10 0.16 5.44 16
13 C -0.53 -31.47 9.09 25.60 0.23 -31.23 16
14 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16
15 C 0.01 0.48 5.46 84.66 0.46 0.94 16
16 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16
17 Si 0.97 45.37 29.54 68.60 2.03 47.40 16
18 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16
19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16
20 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16
21 C -0.28 -10.85 11.14 66.78 0.74 -10.11 16
22 S 0.15 4.32 22.84 -56.49 -1.29 3.03 16
23 H 0.05 0.65 6.52 -2.39 -0.02 0.63 16
24 H 0.07 1.24 6.71 -2.38 -0.02 1.22 16
25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
26 H 0.06 0.81 7.80 -2.39 -0.02 0.79 16
27 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16
29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16
31 H 0.08 1.54 7.63 -2.39 -0.02 1.52 16
32 H 0.10 2.51 6.38 -2.39 -0.02 2.50 16
33 H 0.11 2.07 6.85 -2.38 -0.02 2.05 16
34 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16
35 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16
36 H 0.27 15.36 8.31 -92.70 -0.77 14.58 16
37 H 0.18 6.51 8.06 -2.91 -0.02 6.49 16
Total: -1.00 -69.67 312.53 0.06 -69.61
By element:
Atomic # 1 Polarization: 6.29 SS G_CDS: 1.05 Total: 7.34 kcal
Atomic # 6 Polarization: -34.70 SS G_CDS: 4.71 Total: -29.99 kcal
Atomic # 7 Polarization: -90.96 SS G_CDS: -6.43 Total: -97.39 kcal
Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal
Atomic # 16 Polarization: 4.32 SS G_CDS: -1.29 Total: 3.03 kcal
Total: -69.67 0.06 -69.61 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260890176.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.291 kcal
(2) G-P(sol) polarization free energy of solvation -69.675 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.616 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.610 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.681 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds