Wall clock time and date at job start Mon Mar 30 2020 07:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47005 * 2 1 4 4 C 1.48539 * 110.99796 * 287.39483 * 3 2 1 5 5 C 1.54932 * 103.22489 * 200.27757 * 4 3 2 6 6 C 1.54598 * 102.92273 * 37.41993 * 5 4 3 7 7 H 1.09002 * 110.31174 * 96.95391 * 6 5 4 8 8 C 1.50702 * 110.39117 * 219.08242 * 6 5 4 9 9 N 1.29026 * 124.91772 * 57.17746 * 8 6 5 10 10 C 1.31780 * 117.12371 * 179.97438 * 9 8 6 11 11 C 1.33645 * 114.50120 * 359.97438 * 10 9 8 12 12 C 1.50693 * 126.03634 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47390 * 90.02308 * 12 11 10 14 14 H 1.07999 * 119.99560 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00212 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99860 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00139 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46877 * 60.00178 * 17 15 13 19 19 H 1.48504 * 109.47195 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47256 * 300.00185 * 17 15 13 21 21 S 1.70975 * 124.91172 * 236.87054 * 8 6 5 22 22 C 1.47897 * 110.99752 * 170.00361 * 3 2 1 23 23 H 1.09002 * 109.46683 * 300.00039 * 1 2 3 24 24 H 1.08990 * 109.47273 * 60.00030 * 1 2 3 25 25 H 1.08999 * 109.46919 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46683 * 239.99961 * 2 1 3 27 27 H 1.08997 * 109.47079 * 120.00340 * 2 1 3 28 28 H 1.08999 * 110.66816 * 318.71519 * 4 3 2 29 29 H 1.09005 * 110.66277 * 81.67794 * 4 3 2 30 30 H 1.08994 * 110.72994 * 279.05876 * 5 4 3 31 31 H 1.09002 * 110.72359 * 155.77140 * 5 4 3 32 32 H 1.07996 * 122.75018 * 180.02562 * 10 9 8 33 33 H 1.09003 * 109.47292 * 210.02392 * 12 11 10 34 34 H 1.09000 * 109.47187 * 330.02009 * 12 11 10 35 35 H 0.96999 * 119.99735 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.92227 * 26.48731 * 22 3 2 37 37 H 1.09000 * 110.07910 * 265.28360 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8062 2.0250 -1.3233 5 6 2.8087 3.2062 -1.3116 6 6 4.0330 2.6134 -0.5769 7 1 4.7725 2.2621 -1.2965 8 6 4.6438 3.6417 0.3399 9 7 4.0162 4.2514 1.2882 10 6 4.7021 5.1241 1.9985 11 6 5.9796 5.2575 1.6293 12 6 6.9933 6.1770 2.2601 13 6 7.7013 5.4538 3.3767 14 1 7.4432 4.4305 3.6063 15 6 8.6791 6.0981 4.1045 16 7 8.9937 7.3441 3.8245 17 14 9.5561 5.2020 5.4890 18 1 10.2446 4.0038 4.9452 19 1 10.5561 6.1077 6.1097 20 1 8.5656 4.7818 6.5124 21 16 6.2707 4.1638 0.2789 22 6 3.4784 1.4314 0.2397 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0405 1.3296 -2.1293 29 1 0.7821 2.3871 -1.4148 30 1 2.4007 4.0531 -0.7599 31 1 3.0730 3.4979 -2.3281 32 1 4.2677 5.6848 2.8129 33 1 7.7203 6.4862 1.5091 34 1 6.4875 7.0560 2.6596 35 1 9.6819 7.7972 4.3362 36 1 3.9392 0.5014 -0.0932 37 1 3.6787 1.5862 1.2999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260911365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:51 Heat of formation + Delta-G solvation = 33.486594 kcal Electronic energy + Delta-G solvation = -17485.575360 eV Core-core repulsion = 14774.962207 eV Total energy + Delta-G solvation = -2710.613153 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.65488 -38.36155 -34.16186 -33.31035 -31.05613 -29.26684 -29.24176 -26.36196 -24.38370 -23.08538 -22.47393 -21.01509 -20.82728 -18.10960 -17.54206 -16.42812 -15.96747 -15.65861 -14.82415 -14.74387 -14.27197 -13.84815 -13.53978 -13.28068 -12.84554 -12.63985 -12.44285 -12.16585 -11.87015 -11.64704 -11.54999 -11.38737 -11.26160 -10.98795 -10.93452 -10.80736 -10.74268 -10.31155 -9.97731 -9.64984 -8.91479 -8.51684 -8.48131 -8.44754 -7.90883 -6.13915 -4.19345 1.48637 2.04240 2.51608 3.27993 3.31968 3.35039 3.55446 3.88333 4.37096 4.40653 4.64513 4.79465 4.97190 4.99874 5.14615 5.19215 5.21295 5.33624 5.38824 5.50241 5.64024 5.76754 5.81583 5.82245 5.92626 6.03564 6.12473 6.22498 6.25267 6.34245 6.82565 6.96311 6.99081 7.33569 7.42214 7.80064 8.14541 8.44087 8.83957 9.45327 10.95596 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034169 B = 0.004002 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.260216 B = 6994.388390 C = 7374.871584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 N -0.510 5.510 4 C 0.037 3.963 5 C -0.110 4.110 6 C -0.011 4.011 7 H 0.088 0.912 8 C 0.009 3.991 9 N -0.450 5.450 10 C -0.012 4.012 11 C -0.131 4.131 12 C 0.082 3.918 13 C -0.518 4.518 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 S 0.081 5.919 22 C 0.053 3.947 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.169 0.831 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.265 0.735 36 H 0.045 0.955 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.041 -11.540 -11.001 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 N -0.235 5.235 4 C -0.091 4.091 5 C -0.149 4.149 6 C -0.034 4.034 7 H 0.106 0.894 8 C -0.268 4.268 9 N -0.164 5.164 10 C -0.160 4.160 11 C -0.252 4.252 12 C 0.043 3.957 13 C -0.556 4.556 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 S 0.336 5.664 22 C -0.076 4.076 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.921 -11.494 -11.049 19.908 hybrid contribution 0.706 -0.391 0.960 1.254 sum -11.216 -11.885 -10.089 19.205 Atomic orbital electron populations 1.21725 0.94792 1.01194 1.02562 1.22257 0.96421 0.89437 1.00640 1.64772 1.13902 1.16147 1.28666 1.23246 1.00214 0.95659 0.89966 1.22561 0.93720 0.98681 0.99946 1.20464 0.96933 0.91917 0.94084 0.89399 1.26281 0.94393 1.04638 1.01533 1.66045 1.37687 1.07537 1.05104 1.21553 0.90965 1.00709 1.02744 1.26845 0.99528 1.01639 0.97190 1.17929 0.90605 0.92251 0.94913 1.20992 1.19812 0.99132 1.15693 0.92368 1.24994 0.96669 0.94933 0.97484 1.69935 1.31605 1.10757 1.40761 0.86533 0.79359 0.79488 0.81984 1.20068 1.21089 1.20015 1.83820 1.12495 1.37341 1.32781 1.22848 0.87403 0.95695 1.01651 0.91759 0.92851 0.92585 0.94901 0.90913 0.93965 0.89986 0.89423 0.90921 0.81371 0.94807 0.93698 0.92549 0.93696 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.00 37.16 0.37 -0.87 16 2 C 0.04 0.40 5.42 -3.82 -0.02 0.38 16 3 N -0.51 -6.19 5.24 -230.45 -1.21 -7.40 16 4 C 0.04 0.39 5.91 -1.90 -0.01 0.38 16 5 C -0.11 -1.29 6.60 -24.87 -0.16 -1.46 16 6 C -0.01 -0.15 3.47 -90.41 -0.31 -0.46 16 7 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 8 C 0.01 0.16 5.70 -13.46 -0.08 0.08 16 9 N -0.45 -8.68 10.24 -11.86 -0.12 -8.81 16 10 C -0.01 -0.24 11.25 -19.18 -0.22 -0.46 16 11 C -0.13 -2.86 5.79 -35.92 -0.21 -3.07 16 12 C 0.08 2.09 5.51 -29.04 -0.16 1.93 16 13 C -0.52 -14.29 9.09 -34.44 -0.31 -14.60 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 17 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 S 0.08 1.50 23.18 -107.50 -2.49 -0.99 16 22 C 0.05 0.69 6.31 -2.75 -0.02 0.67 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.44 7.36 -51.93 -0.38 0.05 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.29 7.83 -51.93 -0.41 -0.11 16 27 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.04 0.39 7.81 -51.93 -0.41 -0.02 16 29 H 0.08 0.80 7.80 -51.93 -0.40 0.40 16 30 H 0.09 1.23 7.65 -51.93 -0.40 0.83 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.17 3.31 8.06 -52.49 -0.42 2.89 16 33 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.04 0.50 7.77 -51.93 -0.40 0.10 16 37 H 0.09 1.34 7.65 -51.93 -0.40 0.95 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -29.38 318.23 -10.25 -39.63 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.72 Total: -2.56 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.23 Total: -15.87 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.59 Total: -41.29 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.49 Total: -0.99 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.38 -10.25 -39.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.117 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds