Wall clock time and date at job start Mon Mar 30 2020 07:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47229 * 2 1 4 4 C 1.48821 * 111.18293 * 52.66825 * 3 2 1 5 5 C 1.54936 * 103.34533 * 159.50460 * 4 3 2 6 6 C 1.54594 * 102.92518 * 322.68603 * 5 4 3 7 7 C 1.47900 * 111.00076 * 169.99837 * 3 2 1 8 8 H 1.09002 * 109.91606 * 333.71078 * 7 3 2 9 9 C 1.53008 * 109.91359 * 94.80443 * 7 3 2 10 10 C 1.50692 * 109.47108 * 294.60059 * 9 7 3 11 11 N 1.29526 * 124.56134 * 90.03082 * 10 9 7 12 12 C 1.30677 * 117.63047 * 179.97438 * 11 10 9 13 13 C 1.38592 * 113.55310 * 359.97438 * 12 11 10 14 14 C 1.40033 * 126.25510 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00075 * 200.40825 * 14 13 12 16 16 C 1.40080 * 120.00051 * 20.40463 * 14 13 12 17 17 N 1.30863 * 119.99706 * 23.83228 * 16 14 13 18 18 Si 1.86792 * 119.99893 * 203.83156 * 16 14 13 19 19 H 1.48502 * 109.47533 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47194 * 119.99978 * 18 16 14 21 21 H 1.48499 * 109.47314 * 239.99574 * 18 16 14 22 22 S 1.70887 * 124.56278 * 270.31046 * 10 9 7 23 23 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46653 * 299.99832 * 1 2 3 25 25 H 1.09001 * 109.47049 * 59.99700 * 1 2 3 26 26 H 1.09003 * 109.46653 * 240.00168 * 2 1 3 27 27 H 1.08995 * 109.46815 * 120.00954 * 2 1 3 28 28 H 1.09000 * 110.51930 * 41.07001 * 4 3 2 29 29 H 1.09003 * 110.69518 * 278.01947 * 4 3 2 30 30 H 1.09005 * 110.72134 * 204.33266 * 5 4 3 31 31 H 1.08997 * 110.88004 * 81.12408 * 5 4 3 32 32 H 1.08997 * 110.31021 * 263.04782 * 6 5 4 33 33 H 1.08998 * 110.39185 * 140.91748 * 6 5 4 34 34 H 1.09004 * 109.46758 * 174.59838 * 9 7 3 35 35 H 1.09001 * 109.47068 * 54.60228 * 9 7 3 36 36 H 1.07997 * 123.22424 * 180.02562 * 12 11 10 37 37 H 0.97002 * 120.00247 * 5.63617 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4056 2.1724 1.1034 5 6 2.3843 3.3600 1.2829 6 6 3.7665 2.7066 1.0535 7 6 3.4784 1.4314 0.2398 8 1 3.7901 0.5525 0.8042 9 6 4.2245 1.4850 -1.0949 10 6 3.9990 0.1996 -1.8485 11 7 3.0277 -0.0034 -2.6810 12 6 2.9611 -1.1723 -3.2612 13 6 3.9747 -2.0378 -2.8812 14 6 4.1580 -3.3493 -3.3365 15 1 4.7535 -4.0424 -2.7611 16 6 3.5687 -3.7622 -4.5384 17 7 3.2592 -2.8787 -5.4528 18 14 3.2246 -5.5739 -4.8357 19 1 3.6641 -6.3615 -3.6559 20 1 1.7684 -5.7729 -5.0485 21 1 3.9671 -6.0279 -6.0390 22 16 4.9863 -1.1887 -1.7145 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 1.3525 1.5765 2.0145 29 1 0.4161 2.5292 0.8175 30 1 2.3137 3.7691 2.2908 31 1 2.1957 4.1347 0.5397 32 1 4.2270 2.4506 2.0076 33 1 4.4146 3.3771 0.4891 34 1 5.2908 1.6155 -0.9101 35 1 3.8529 2.3224 -1.6855 36 1 2.1906 -1.4383 -3.9697 37 1 3.5113 -1.9495 -5.3344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260939912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:28 Heat of formation + Delta-G solvation = 16.289443 kcal Electronic energy + Delta-G solvation = -18397.223774 eV Core-core repulsion = 15685.864896 eV Total energy + Delta-G solvation = -2711.358878 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.08839 -37.54750 -34.44300 -33.21684 -31.60368 -28.80236 -28.28807 -26.59917 -24.23958 -22.76933 -21.82251 -20.33946 -19.76567 -19.23179 -17.47186 -16.17224 -15.67187 -15.26223 -14.49085 -14.29997 -14.07285 -13.78871 -12.93915 -12.85599 -12.67564 -12.44795 -12.26131 -12.13430 -11.95298 -11.35229 -11.29484 -11.07444 -10.93944 -10.79412 -10.58479 -10.53488 -10.39435 -10.28986 -10.06506 -9.83333 -9.35840 -8.13779 -7.96638 -7.85411 -7.52654 -7.34371 -4.63769 2.39352 3.00520 3.06908 3.16118 3.23997 3.56326 3.82287 4.25977 4.34072 4.80817 4.89353 4.92658 5.14949 5.45031 5.56199 5.61348 5.66154 5.80849 5.84731 5.91025 5.93800 5.95683 6.12312 6.17127 6.22062 6.30132 6.39001 6.53048 6.71851 6.76314 6.93036 7.00221 7.35449 7.42617 7.56768 7.59611 7.74943 8.22073 8.34211 9.66315 9.72553 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031109 B = 0.005477 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.855742 B = 5110.959687 C = 5570.200839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 N -0.492 5.492 4 C 0.031 3.969 5 C -0.121 4.121 6 C -0.127 4.127 7 C 0.074 3.926 8 H 0.047 0.953 9 C 0.007 3.993 10 C -0.114 4.114 11 N -0.394 5.394 12 C -0.181 4.181 13 C 0.014 3.986 14 C -0.436 4.436 15 H 0.086 0.914 16 C 0.037 3.963 17 N -0.765 5.765 18 Si 1.079 2.921 19 H -0.273 1.273 20 H -0.270 1.270 21 H -0.273 1.273 22 S -0.074 6.074 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.018 0.982 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 4.446 9.144 10.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 N -0.217 5.217 4 C -0.097 4.097 5 C -0.160 4.160 6 C -0.166 4.166 7 C -0.036 4.036 8 H 0.065 0.935 9 C -0.035 4.035 10 C -0.384 4.384 11 N -0.105 5.105 12 C -0.333 4.333 13 C -0.108 4.108 14 C -0.474 4.474 15 H 0.104 0.896 16 C -0.191 4.191 17 N -0.387 5.387 18 Si 0.901 3.099 19 H -0.198 1.198 20 H -0.195 1.195 21 H -0.199 1.199 22 S 0.177 5.823 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.164 0.836 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.458 4.034 8.061 9.131 hybrid contribution 0.242 0.382 1.281 1.358 sum -1.216 4.416 9.342 10.405 Atomic orbital electron populations 1.21789 0.95779 1.01200 1.01521 1.22412 0.95044 0.89298 1.01879 1.64747 1.03540 1.12173 1.41227 1.23277 0.98613 0.94648 0.93124 1.22439 0.94765 0.97766 1.00984 1.22474 0.97522 0.97040 0.99540 1.22429 0.89083 0.96261 0.95821 0.93518 1.19661 0.97289 0.93425 0.93096 1.24829 1.02342 0.99501 1.11688 1.65182 1.19348 1.21326 1.04609 1.21610 1.04818 0.91298 1.15622 1.23233 0.94276 0.97632 0.95626 1.20108 1.26518 0.94480 1.06312 0.89608 1.27369 0.92093 1.08298 0.91379 1.70349 1.28254 1.07664 1.32458 0.83426 0.78397 0.70967 0.77111 1.19767 1.19463 1.19860 1.83179 1.35383 1.11470 1.52273 0.92788 0.93602 0.91906 0.88041 0.96353 0.94649 0.90560 0.91747 0.90907 0.91981 0.90942 0.92254 0.90625 0.83638 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.58 37.16 0.36 -1.98 16 2 C 0.04 0.78 5.39 -3.83 -0.02 0.76 16 3 N -0.49 -8.66 4.93 -222.32 -1.10 -9.75 16 4 C 0.03 0.44 5.12 -1.74 -0.01 0.43 16 5 C -0.12 -1.48 7.06 -24.87 -0.18 -1.65 16 6 C -0.13 -1.68 6.57 -25.38 -0.17 -1.85 16 7 C 0.07 1.25 2.60 -66.64 -0.17 1.08 16 8 H 0.05 0.85 7.57 -51.93 -0.39 0.46 16 9 C 0.01 0.13 5.25 -27.88 -0.15 -0.01 16 10 C -0.11 -2.64 5.18 -13.25 -0.07 -2.70 16 11 N -0.39 -10.01 8.91 -10.84 -0.10 -10.11 16 12 C -0.18 -4.79 9.28 -17.91 -0.17 -4.96 16 13 C 0.01 0.36 5.91 -38.78 -0.23 0.13 16 14 C -0.44 -11.02 9.32 -38.22 -0.36 -11.38 16 15 H 0.09 2.08 7.95 -52.49 -0.42 1.66 16 16 C 0.04 0.87 5.24 -17.27 -0.09 0.78 16 17 N -0.76 -19.46 12.56 55.56 0.70 -18.76 16 18 Si 1.08 20.08 30.00 -169.99 -5.10 14.98 16 19 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 20 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 22 S -0.07 -1.74 23.13 -107.50 -2.49 -4.23 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.63 6.81 -51.93 -0.35 0.28 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.10 2.31 4.93 -51.93 -0.26 2.05 16 27 H 0.02 0.34 7.81 -51.93 -0.41 -0.07 16 28 H 0.04 0.48 8.00 -51.93 -0.42 0.07 16 29 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.89 7.69 -51.93 -0.40 0.50 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.15 4.00 6.75 -52.49 -0.35 3.65 16 37 H 0.31 8.27 6.36 -40.82 -0.26 8.01 16 LS Contribution 305.89 15.07 4.61 4.61 Total: -1.00 -27.02 305.89 -10.12 -37.15 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.41 Total: 7.47 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -1.25 Total: -21.35 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.49 Total: -38.62 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.10 Total: 14.98 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.49 Total: -4.23 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.02 -10.12 -37.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260939912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.435 kcal (2) G-P(sol) polarization free energy of solvation -27.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds