Wall clock time and date at job start Mon Mar 30 2020 07:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47229 * 2 1 4 4 C 1.48821 * 111.18293 * 52.66825 * 3 2 1 5 5 C 1.54936 * 103.34533 * 159.50460 * 4 3 2 6 6 C 1.54594 * 102.92518 * 322.68603 * 5 4 3 7 7 C 1.47900 * 111.00076 * 169.99837 * 3 2 1 8 8 H 1.09002 * 109.91606 * 333.71078 * 7 3 2 9 9 C 1.53008 * 109.91359 * 94.80443 * 7 3 2 10 10 C 1.50692 * 109.47108 * 294.60059 * 9 7 3 11 11 N 1.29526 * 124.56134 * 90.03082 * 10 9 7 12 12 C 1.30677 * 117.63047 * 179.97438 * 11 10 9 13 13 C 1.38592 * 113.55310 * 359.97438 * 12 11 10 14 14 C 1.40033 * 126.25510 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00075 * 200.40825 * 14 13 12 16 16 C 1.40080 * 120.00051 * 20.40463 * 14 13 12 17 17 N 1.30863 * 119.99706 * 23.83228 * 16 14 13 18 18 Si 1.86792 * 119.99893 * 203.83156 * 16 14 13 19 19 H 1.48502 * 109.47533 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47194 * 119.99978 * 18 16 14 21 21 H 1.48499 * 109.47314 * 239.99574 * 18 16 14 22 22 S 1.70887 * 124.56278 * 270.31046 * 10 9 7 23 23 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46653 * 299.99832 * 1 2 3 25 25 H 1.09001 * 109.47049 * 59.99700 * 1 2 3 26 26 H 1.09003 * 109.46653 * 240.00168 * 2 1 3 27 27 H 1.08995 * 109.46815 * 120.00954 * 2 1 3 28 28 H 1.09000 * 110.51930 * 41.07001 * 4 3 2 29 29 H 1.09003 * 110.69518 * 278.01947 * 4 3 2 30 30 H 1.09005 * 110.72134 * 204.33266 * 5 4 3 31 31 H 1.08997 * 110.88004 * 81.12408 * 5 4 3 32 32 H 1.08997 * 110.31021 * 263.04782 * 6 5 4 33 33 H 1.08998 * 110.39185 * 140.91748 * 6 5 4 34 34 H 1.09004 * 109.46758 * 174.59838 * 9 7 3 35 35 H 1.09001 * 109.47068 * 54.60228 * 9 7 3 36 36 H 1.07997 * 123.22424 * 180.02562 * 12 11 10 37 37 H 0.97002 * 120.00247 * 5.63617 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4056 2.1724 1.1034 5 6 2.3843 3.3600 1.2829 6 6 3.7665 2.7066 1.0535 7 6 3.4784 1.4314 0.2398 8 1 3.7901 0.5525 0.8042 9 6 4.2245 1.4850 -1.0949 10 6 3.9990 0.1996 -1.8485 11 7 3.0277 -0.0034 -2.6810 12 6 2.9611 -1.1723 -3.2612 13 6 3.9747 -2.0378 -2.8812 14 6 4.1580 -3.3493 -3.3365 15 1 4.7535 -4.0424 -2.7611 16 6 3.5687 -3.7622 -4.5384 17 7 3.2592 -2.8787 -5.4528 18 14 3.2246 -5.5739 -4.8357 19 1 3.6641 -6.3615 -3.6559 20 1 1.7684 -5.7729 -5.0485 21 1 3.9671 -6.0279 -6.0390 22 16 4.9863 -1.1887 -1.7145 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 1.3525 1.5765 2.0145 29 1 0.4161 2.5292 0.8175 30 1 2.3137 3.7691 2.2908 31 1 2.1957 4.1347 0.5397 32 1 4.2270 2.4506 2.0076 33 1 4.4146 3.3771 0.4891 34 1 5.2908 1.6155 -0.9101 35 1 3.8529 2.3224 -1.6855 36 1 2.1906 -1.4383 -3.9697 37 1 3.5113 -1.9495 -5.3344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260939912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:27 Heat of formation + Delta-G solvation = 0.423563 kcal Electronic energy + Delta-G solvation = -18397.911770 eV Core-core repulsion = 15685.864896 eV Total energy + Delta-G solvation = -2712.046874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48498 -39.36711 -36.31130 -34.53393 -33.06292 -30.62315 -29.55875 -28.12449 -26.00692 -24.34731 -23.40580 -21.50995 -21.15971 -21.06833 -19.34335 -18.07263 -16.94792 -16.58636 -16.09506 -15.93357 -15.57152 -15.10503 -14.81126 -14.35923 -14.21745 -14.13998 -13.70439 -13.58480 -13.34108 -12.91548 -12.73561 -12.41364 -12.22628 -12.08059 -12.03493 -11.92320 -11.87136 -11.73196 -11.57707 -11.40736 -11.13594 -10.05195 -9.91506 -9.48031 -9.32962 -9.19330 -6.61686 0.49093 1.15769 1.49177 1.57903 1.63773 1.79862 2.24102 2.39355 2.90124 3.06417 3.65665 3.82385 4.01626 4.06777 4.18375 4.32149 4.37948 4.49564 4.56006 4.57438 4.70339 4.79993 4.88437 4.92500 4.95819 5.01991 5.07945 5.14912 5.16590 5.20916 5.31807 5.37044 5.38662 5.62046 5.76963 6.13237 6.20844 6.24070 6.44452 7.69268 7.76307 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031109 B = 0.005477 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.855742 B = 5110.959687 C = 5570.200839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.044 3.956 3 N -0.513 5.513 4 C 0.030 3.970 5 C -0.113 4.113 6 C -0.121 4.121 7 C 0.074 3.926 8 H 0.031 0.969 9 C 0.004 3.996 10 C -0.092 4.092 11 N -0.416 5.416 12 C -0.201 4.201 13 C -0.014 4.014 14 C -0.461 4.461 15 H 0.092 0.908 16 C 0.006 3.994 17 N -0.785 5.785 18 Si 1.131 2.869 19 H -0.256 1.256 20 H -0.265 1.265 21 H -0.259 1.259 22 S -0.053 6.053 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.016 0.984 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 5.112 11.082 12.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.084 4.084 3 N -0.238 5.238 4 C -0.098 4.098 5 C -0.151 4.151 6 C -0.159 4.159 7 C -0.036 4.036 8 H 0.049 0.951 9 C -0.038 4.038 10 C -0.365 4.365 11 N -0.126 5.126 12 C -0.352 4.352 13 C -0.135 4.135 14 C -0.498 4.498 15 H 0.110 0.890 16 C -0.216 4.216 17 N -0.406 5.406 18 Si 0.945 3.055 19 H -0.179 1.179 20 H -0.190 1.190 21 H -0.184 1.184 22 S 0.198 5.802 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.249 4.706 9.992 11.115 hybrid contribution 0.213 0.323 0.771 0.863 sum -1.036 5.029 10.763 11.925 Atomic orbital electron populations 1.21711 0.93947 1.01629 1.02108 1.22238 0.96629 0.90008 0.99543 1.64681 1.04122 1.11457 1.43500 1.23375 0.99301 0.94931 0.92148 1.22446 0.93109 0.96774 1.02804 1.22456 0.98580 0.95044 0.99791 1.22392 0.88643 0.97959 0.94580 0.95056 1.19897 0.99091 0.90867 0.93914 1.25710 1.00516 1.00499 1.09750 1.65194 1.20441 1.21202 1.05803 1.21361 1.05071 0.92345 1.16400 1.23492 0.94926 0.98351 0.96775 1.20387 1.27693 0.94503 1.07205 0.89038 1.28932 0.90472 1.11772 0.90446 1.70462 1.29769 1.06983 1.33402 0.82851 0.78609 0.65901 0.78145 1.17939 1.19016 1.18363 1.82961 1.34774 1.11248 1.51217 0.92528 0.90924 0.93219 0.92449 0.96613 0.93883 0.89930 0.88791 0.90824 0.90085 0.89818 0.90163 0.90877 0.85741 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 9.58 71.98 0.69 -3.62 16 2 C 0.04 1.67 5.39 86.31 0.47 2.13 16 3 N -0.51 -17.42 4.93 -857.30 -4.22 -21.65 16 4 C 0.03 0.75 5.12 86.59 0.44 1.20 16 5 C -0.11 -2.31 7.06 31.80 0.22 -2.09 16 6 C -0.12 -2.74 6.57 31.47 0.21 -2.54 16 7 C 0.07 2.39 2.60 45.06 0.12 2.50 16 8 H 0.03 1.11 7.57 -2.39 -0.02 1.09 16 9 C 0.00 0.15 5.25 29.85 0.16 0.30 16 10 C -0.09 -4.30 5.18 88.45 0.46 -3.84 16 11 N -0.42 -21.81 8.91 -188.22 -1.68 -23.49 16 12 C -0.20 -11.21 9.28 84.95 0.79 -10.42 16 13 C -0.01 -0.76 5.91 22.79 0.13 -0.63 16 14 C -0.46 -23.86 9.32 23.15 0.22 -23.65 16 15 H 0.09 4.50 7.95 -2.91 -0.02 4.47 16 16 C 0.01 0.29 5.24 85.28 0.45 0.74 16 17 N -0.78 -41.40 12.56 21.86 0.27 -41.13 16 18 Si 1.13 40.08 30.00 68.60 2.06 42.14 16 19 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 20 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 21 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 22 S -0.05 -2.53 23.13 -56.49 -1.31 -3.83 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.07 1.88 6.81 -2.39 -0.02 1.86 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 2.69 4.93 -2.39 -0.01 2.68 16 27 H 0.02 0.58 7.81 -2.39 -0.02 0.56 16 28 H 0.04 1.04 8.00 -2.39 -0.02 1.02 16 29 H 0.08 1.98 7.69 -2.39 -0.02 1.96 16 30 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.74 7.69 -2.39 -0.02 1.73 16 34 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.13 7.33 6.75 -2.91 -0.02 7.31 16 37 H 0.29 16.45 6.36 -92.71 -0.59 15.86 16 Total: -1.00 -60.84 305.89 0.70 -60.14 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 1.23 Total: 27.73 kcal Atomic # 6 Polarization: -44.26 SS G_CDS: 4.35 Total: -39.91 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -5.63 Total: -86.27 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.06 Total: 42.14 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -1.31 Total: -3.83 kcal Total: -60.84 0.70 -60.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260939912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.563 kcal (2) G-P(sol) polarization free energy of solvation -60.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds