Wall clock time and date at job start Mon Mar 30 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47165 * 2 1 4 4 C 1.50697 * 109.46902 * 120.00313 * 2 1 3 5 5 C 1.33726 * 122.28711 * 300.01940 * 4 2 1 6 6 N 1.39612 * 125.22742 * 0.25863 * 5 4 2 7 7 S 1.75769 * 109.53903 * 179.97438 * 5 4 2 8 8 C 1.75652 * 91.13446 * 359.97438 * 7 5 4 9 9 C 1.34657 * 110.08276 * 0.04168 * 8 7 5 10 10 C 1.52344 * 121.91930 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.72004 * 103.01602 * 10 9 8 12 12 C 1.50700 * 109.75190 * 223.63283 * 10 9 8 13 13 H 1.07997 * 120.00192 * 358.77481 * 12 10 9 14 14 C 1.37875 * 120.00343 * 178.76563 * 12 10 9 15 15 N 1.31521 * 119.99385 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00507 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46913 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46992 * 119.99961 * 16 14 12 19 19 H 1.48494 * 109.47700 * 240.00385 * 16 14 12 20 20 C 1.53148 * 108.20467 * 343.33159 * 10 9 8 21 21 N 1.46982 * 109.45667 * 50.41048 * 20 10 9 22 22 C 1.47095 * 110.88759 * 288.15078 * 21 20 10 23 23 H 1.08999 * 109.46587 * 299.99959 * 1 2 3 24 24 H 1.08999 * 109.46988 * 59.99527 * 1 2 3 25 25 H 1.09003 * 109.47372 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46587 * 240.00041 * 2 1 3 27 27 H 1.08999 * 109.47334 * 60.00498 * 3 2 1 28 28 H 1.09001 * 109.47105 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47553 * 300.00126 * 3 2 1 30 30 H 0.97007 * 119.99681 * 179.71774 * 6 5 4 31 31 H 0.96994 * 120.00109 * 359.71624 * 6 5 4 32 32 H 0.97004 * 119.99447 * 179.97438 * 15 14 12 33 33 H 1.08997 * 109.47178 * 290.40980 * 20 10 9 34 34 H 1.09002 * 109.47406 * 170.40593 * 20 10 9 35 35 H 1.00894 * 111.00316 * 52.02824 * 21 20 10 36 36 H 1.08996 * 109.62796 * 291.35384 * 22 21 20 37 37 H 1.08999 * 109.78091 * 170.87955 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7372 -0.2938 2.4664 6 7 0.9465 0.8146 2.7752 7 16 2.4909 -1.3610 3.6422 8 6 3.1837 -2.3415 2.3600 9 6 2.8343 -1.8451 1.1581 10 6 3.2915 -2.4907 -0.1439 11 1 2.4714 -3.0619 -0.5790 12 6 3.7380 -1.4251 -1.1114 13 1 3.6808 -0.3835 -0.8318 14 6 4.2199 -1.7798 -2.3535 15 7 4.2894 -3.0483 -2.6942 16 14 4.7741 -0.4590 -3.5526 17 1 4.5963 0.8785 -2.9325 18 1 6.2067 -0.6630 -3.8862 19 1 3.9604 -0.5426 -4.7920 20 6 4.4626 -3.4260 0.1713 21 7 4.0952 -4.3125 1.2847 22 6 4.0479 -3.5693 2.5532 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 0.7775 1.0467 3.7018 31 1 0.5663 1.3527 2.0633 32 1 4.6280 -3.2978 -3.5682 33 1 5.3349 -2.8348 0.4500 34 1 4.6959 -4.0254 -0.7087 35 1 3.2171 -4.7753 1.1038 36 1 5.0555 -3.2666 2.8379 37 1 3.6205 -4.1987 3.3337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260951727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:59 Heat of formation + Delta-G solvation = 27.949159 kcal Electronic energy + Delta-G solvation = -19148.035802 eV Core-core repulsion = 16437.182527 eV Total energy + Delta-G solvation = -2710.853275 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.14910 -36.65278 -33.46269 -32.81546 -32.51564 -29.52303 -27.35154 -26.64079 -24.90397 -23.10566 -22.19070 -20.78005 -19.22712 -18.02292 -17.43422 -16.31310 -15.24525 -14.78758 -14.56609 -14.30883 -13.74164 -13.43623 -13.19654 -13.14421 -12.62924 -12.40053 -12.22113 -12.03452 -11.57581 -11.34835 -11.09169 -10.97390 -10.79329 -10.56426 -10.47139 -10.25044 -10.00765 -9.77237 -9.53733 -9.31578 -9.06984 -8.47053 -7.54923 -7.42996 -6.70085 -6.07000 -4.07820 1.96206 2.03368 2.69834 3.26240 3.35526 3.38538 3.66312 4.27532 4.39805 5.19492 5.28931 5.58575 5.63214 5.84483 5.89969 5.95493 6.04799 6.13304 6.21041 6.25671 6.29927 6.47574 6.63559 6.72435 6.78059 6.83818 6.90285 7.22864 7.35859 7.48333 7.48852 7.71518 7.74019 7.91586 7.98268 8.00435 8.25460 8.41143 8.92720 9.52808 10.99891 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017216 B = 0.009859 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.973750 B = 2839.461166 C = 4066.230713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.139 4.139 4 C -0.167 4.167 5 C 0.106 3.894 6 N -0.857 5.857 7 S 0.025 5.975 8 C -0.282 4.282 9 C -0.008 4.008 10 C 0.073 3.927 11 H 0.041 0.959 12 C -0.505 4.505 13 H 0.072 0.928 14 C 0.064 3.936 15 N -0.887 5.887 16 Si 0.888 3.112 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.063 3.937 21 N -0.685 5.685 22 C 0.146 3.854 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.131 0.869 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.390 0.610 31 H 0.401 0.599 32 H 0.261 0.739 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.333 0.667 36 H 0.070 0.930 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.628 4.688 8.440 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.184 4.184 5 C -0.112 4.112 6 N -0.406 5.406 7 S 0.282 5.718 8 C -0.401 4.401 9 C -0.020 4.020 10 C 0.051 3.949 11 H 0.059 0.941 12 C -0.544 4.544 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.716 3.284 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.066 4.066 21 N -0.313 5.313 22 C 0.013 3.987 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.237 0.763 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.835 4.237 9.957 11.852 hybrid contribution -0.785 1.773 -2.029 2.806 sum -5.619 6.010 7.928 11.426 Atomic orbital electron populations 1.21899 0.96859 1.01290 0.99927 1.20217 0.93240 0.95005 0.98691 1.21835 1.01796 0.96425 0.99634 1.18255 1.07016 1.00486 0.92609 1.21455 0.99838 0.94140 0.95772 1.41979 1.58354 1.30656 1.09591 1.83514 1.52619 1.24897 1.10743 1.25130 1.13950 1.06878 0.94126 1.19910 0.93276 0.92789 0.96009 1.18543 0.94688 0.94586 0.87100 0.94144 1.21191 1.41848 0.93280 0.98083 0.90979 1.24965 0.95516 0.95271 0.98091 1.69886 1.46262 1.15263 1.21167 0.86583 0.78443 0.82259 0.81136 1.19609 1.21031 1.21052 1.22319 0.97816 0.94344 0.92090 1.61206 1.36295 1.30544 1.03205 1.20480 0.96411 0.88457 0.93333 0.94031 0.93265 0.92974 0.85196 0.94147 0.92386 0.93406 0.78244 0.76344 0.92870 0.92974 0.87818 0.85158 0.91140 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.95 37.16 0.33 -1.92 16 2 C -0.05 -0.96 2.08 -91.78 -0.19 -1.15 16 3 C -0.14 -2.36 8.65 37.15 0.32 -2.04 16 4 C -0.17 -3.30 4.50 -105.87 -0.48 -3.77 16 5 C 0.11 1.83 7.14 -15.58 -0.11 1.72 16 6 N -0.86 -11.52 8.12 31.61 0.26 -11.26 16 7 S 0.03 0.42 23.31 -107.50 -2.51 -2.08 16 8 C -0.28 -5.56 6.42 -35.24 -0.23 -5.78 16 9 C -0.01 -0.18 5.40 -104.74 -0.57 -0.75 16 10 C 0.07 1.74 2.26 -92.03 -0.21 1.53 16 11 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 12 C -0.51 -12.82 6.22 -34.44 -0.21 -13.04 16 13 H 0.07 1.83 4.86 -52.49 -0.26 1.57 16 14 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 15 N -0.89 -23.90 11.46 55.43 0.64 -23.26 16 16 Si 0.89 20.44 29.54 -169.99 -5.02 15.41 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 C 0.06 1.46 5.45 -3.70 -0.02 1.44 16 21 N -0.69 -13.68 6.92 -114.39 -0.79 -14.47 16 22 C 0.15 2.67 6.92 -4.54 -0.03 2.64 16 23 H 0.04 0.58 5.50 -51.93 -0.29 0.29 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.13 2.86 4.75 -51.93 -0.25 2.62 16 27 H 0.04 0.59 5.53 -51.93 -0.29 0.31 16 28 H 0.06 1.10 7.31 -51.93 -0.38 0.72 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.39 4.28 8.96 -40.82 -0.37 3.91 16 31 H 0.40 5.06 4.41 -40.82 -0.18 4.88 16 32 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.05 1.28 8.03 -51.93 -0.42 0.86 16 34 H 0.10 2.65 6.43 -51.93 -0.33 2.32 16 35 H 0.33 6.40 8.77 -39.29 -0.34 6.05 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 291.66 15.07 4.40 4.40 Total: -1.00 -26.55 291.66 -9.28 -35.83 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -4.77 Total: 15.02 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -1.49 Total: -19.58 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.10 Total: -49.00 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.51 Total: -2.08 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.55 -9.28 -35.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260951727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.781 kcal (2) G-P(sol) polarization free energy of solvation -26.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds