Wall clock time and date at job start Mon Mar 30 2020 06:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47165 * 2 1 4 4 C 1.50697 * 109.46902 * 120.00313 * 2 1 3 5 5 C 1.33726 * 122.28711 * 300.01940 * 4 2 1 6 6 N 1.39612 * 125.22742 * 0.25863 * 5 4 2 7 7 S 1.75769 * 109.53903 * 179.97438 * 5 4 2 8 8 C 1.75652 * 91.13446 * 359.97438 * 7 5 4 9 9 C 1.34657 * 110.08276 * 0.04168 * 8 7 5 10 10 C 1.52344 * 121.91930 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.72004 * 103.01602 * 10 9 8 12 12 C 1.50700 * 109.75190 * 223.63283 * 10 9 8 13 13 H 1.07997 * 120.00192 * 358.77481 * 12 10 9 14 14 C 1.37875 * 120.00343 * 178.76563 * 12 10 9 15 15 N 1.31521 * 119.99385 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00507 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46913 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46992 * 119.99961 * 16 14 12 19 19 H 1.48494 * 109.47700 * 240.00385 * 16 14 12 20 20 C 1.53148 * 108.20467 * 343.33159 * 10 9 8 21 21 N 1.46982 * 109.45667 * 50.41048 * 20 10 9 22 22 C 1.47095 * 110.88759 * 288.15078 * 21 20 10 23 23 H 1.08999 * 109.46587 * 299.99959 * 1 2 3 24 24 H 1.08999 * 109.46988 * 59.99527 * 1 2 3 25 25 H 1.09003 * 109.47372 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46587 * 240.00041 * 2 1 3 27 27 H 1.08999 * 109.47334 * 60.00498 * 3 2 1 28 28 H 1.09001 * 109.47105 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47553 * 300.00126 * 3 2 1 30 30 H 0.97007 * 119.99681 * 179.71774 * 6 5 4 31 31 H 0.96994 * 120.00109 * 359.71624 * 6 5 4 32 32 H 0.97004 * 119.99447 * 179.97438 * 15 14 12 33 33 H 1.08997 * 109.47178 * 290.40980 * 20 10 9 34 34 H 1.09002 * 109.47406 * 170.40593 * 20 10 9 35 35 H 1.00894 * 111.00316 * 52.02824 * 21 20 10 36 36 H 1.08996 * 109.62796 * 291.35384 * 22 21 20 37 37 H 1.08999 * 109.78091 * 170.87955 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7372 -0.2938 2.4664 6 7 0.9465 0.8146 2.7752 7 16 2.4909 -1.3610 3.6422 8 6 3.1837 -2.3415 2.3600 9 6 2.8343 -1.8451 1.1581 10 6 3.2915 -2.4907 -0.1439 11 1 2.4714 -3.0619 -0.5790 12 6 3.7380 -1.4251 -1.1114 13 1 3.6808 -0.3835 -0.8318 14 6 4.2199 -1.7798 -2.3535 15 7 4.2894 -3.0483 -2.6942 16 14 4.7741 -0.4590 -3.5526 17 1 4.5963 0.8785 -2.9325 18 1 6.2067 -0.6630 -3.8862 19 1 3.9604 -0.5426 -4.7920 20 6 4.4626 -3.4260 0.1713 21 7 4.0952 -4.3125 1.2847 22 6 4.0479 -3.5693 2.5532 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 0.7775 1.0467 3.7018 31 1 0.5663 1.3527 2.0633 32 1 4.6280 -3.2978 -3.5682 33 1 5.3349 -2.8348 0.4500 34 1 4.6959 -4.0254 -0.7087 35 1 3.2171 -4.7753 1.1038 36 1 5.0555 -3.2666 2.8379 37 1 3.6205 -4.1987 3.3337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260951727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:58 Heat of formation + Delta-G solvation = 10.615269 kcal Electronic energy + Delta-G solvation = -19148.787456 eV Core-core repulsion = 16437.182527 eV Total energy + Delta-G solvation = -2711.604929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.66897 -38.17750 -35.18109 -34.28141 -34.03739 -31.34216 -28.87401 -27.95543 -26.71295 -24.65422 -23.82998 -22.41676 -20.64580 -19.53090 -18.96032 -18.14179 -16.65844 -16.55563 -16.02975 -15.87615 -15.30393 -14.92245 -14.81809 -14.68989 -14.15945 -13.96759 -13.76082 -13.51206 -13.12347 -12.88472 -12.76921 -12.63606 -12.49188 -12.24901 -12.00144 -11.88468 -11.60038 -11.37886 -11.14887 -10.94554 -10.73678 -10.42822 -9.23430 -8.86801 -8.10780 -8.00703 -6.10868 0.49427 0.65981 1.21309 1.40230 1.44276 1.53664 2.11742 2.47301 3.09984 3.21562 3.63340 4.17718 4.28861 4.44496 4.48071 4.49691 4.61484 4.72308 4.79724 4.85261 4.88195 4.97654 4.98784 5.12391 5.21312 5.34976 5.52243 5.58870 5.65361 5.78405 5.80619 5.88945 6.07012 6.26982 6.43777 6.49731 6.59685 6.91459 6.94633 7.50808 9.00188 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017216 B = 0.009859 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.973750 B = 2839.461166 C = 4066.230713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 C -0.133 4.133 4 C -0.202 4.202 5 C 0.115 3.885 6 N -0.838 5.838 7 S 0.092 5.908 8 C -0.303 4.303 9 C -0.037 4.037 10 C 0.077 3.923 11 H 0.004 0.996 12 C -0.503 4.503 13 H 0.070 0.930 14 C 0.017 3.983 15 N -0.916 5.916 16 Si 0.942 3.058 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.282 1.282 20 C 0.081 3.919 21 N -0.682 5.682 22 C 0.145 3.855 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.035 0.965 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.407 0.593 31 H 0.408 0.592 32 H 0.260 0.740 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.337 0.663 36 H 0.072 0.928 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 6.487 10.634 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.191 4.191 4 C -0.217 4.217 5 C -0.106 4.106 6 N -0.388 5.388 7 S 0.349 5.651 8 C -0.421 4.421 9 C -0.049 4.049 10 C 0.055 3.945 11 H 0.022 0.978 12 C -0.542 4.542 13 H 0.088 0.912 14 C -0.182 4.182 15 N -0.556 5.556 16 Si 0.769 3.231 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.208 1.208 20 C -0.049 4.049 21 N -0.309 5.309 22 C 0.013 3.987 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.237 0.763 31 H 0.244 0.756 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.153 0.847 36 H 0.090 0.910 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.940 6.067 12.176 14.844 hybrid contribution -0.506 1.229 -2.582 2.904 sum -6.446 7.296 9.594 13.668 Atomic orbital electron populations 1.21821 0.94794 1.00871 1.01754 1.20051 0.94982 0.95379 0.96727 1.21772 1.00045 0.95746 1.01513 1.18254 1.08547 1.00955 0.93984 1.21564 0.99006 0.94604 0.95392 1.41956 1.56784 1.29104 1.10995 1.83191 1.51005 1.22974 1.07884 1.25312 1.14026 1.07656 0.95127 1.19782 0.95362 0.94411 0.95375 1.18286 0.93533 0.94159 0.88515 0.97773 1.21414 1.40721 0.93571 0.98471 0.91233 1.25620 0.96046 0.96852 0.99663 1.70012 1.47523 1.16688 1.21383 0.85725 0.77704 0.80379 0.79298 1.18982 1.21204 1.20839 1.21891 0.96923 0.93894 0.92170 1.61104 1.36626 1.30096 1.03043 1.20598 0.96722 0.88575 0.92778 0.91675 0.91905 0.94530 0.89396 0.91604 0.94992 0.92163 0.76260 0.75594 0.93115 0.94853 0.90704 0.84721 0.90960 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 8.95 71.98 0.64 -3.42 16 2 C -0.05 -1.88 2.08 -11.54 -0.02 -1.90 16 3 C -0.13 -4.31 8.65 71.98 0.62 -3.68 16 4 C -0.20 -7.77 4.50 -20.67 -0.09 -7.87 16 5 C 0.11 3.64 7.14 82.43 0.59 4.23 16 6 N -0.84 -19.10 8.12 -53.91 -0.44 -19.54 16 7 S 0.09 2.80 23.31 -56.49 -1.32 1.49 16 8 C -0.30 -11.55 6.42 25.08 0.16 -11.39 16 9 C -0.04 -1.63 5.40 -19.94 -0.11 -1.74 16 10 C 0.08 3.85 2.26 -11.71 -0.03 3.83 16 11 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 12 C -0.50 -26.60 6.22 25.60 0.16 -26.44 16 13 H 0.07 3.65 4.86 -2.91 -0.01 3.64 16 14 C 0.02 0.91 5.31 84.65 0.45 1.36 16 15 N -0.92 -51.66 11.46 21.45 0.25 -51.41 16 16 Si 0.94 43.05 29.54 68.60 2.03 45.07 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 C 0.08 3.92 5.45 86.34 0.47 4.39 16 21 N -0.68 -27.59 6.92 -515.84 -3.57 -31.15 16 22 C 0.15 5.14 6.92 85.73 0.59 5.74 16 23 H 0.06 1.61 5.50 -2.39 -0.01 1.60 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 4.01 4.75 -2.39 -0.01 3.99 16 27 H 0.07 1.74 5.53 -2.39 -0.01 1.72 16 28 H 0.03 1.18 7.31 -2.39 -0.02 1.16 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.41 6.95 8.96 -92.70 -0.83 6.12 16 31 H 0.41 8.54 4.41 -92.71 -0.41 8.13 16 32 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.03 1.70 8.03 -2.39 -0.02 1.68 16 34 H 0.07 4.06 6.43 -2.39 -0.02 4.04 16 35 H 0.34 13.19 8.77 -89.70 -0.79 12.41 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -59.45 291.66 -0.51 -59.96 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: -0.90 Total: 32.49 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 3.44 Total: -36.90 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -3.76 Total: -102.10 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.32 Total: 1.49 kcal Total: -59.45 -0.51 -59.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260951727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.571 kcal (2) G-P(sol) polarization free energy of solvation -59.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds