Wall clock time and date at job start Mon Mar 30 2020 07:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3 5 5 C 1.47446 * 110.99734 * 59.87440 * 4 2 1 6 6 C 1.54325 * 107.23429 * 123.26132 * 5 4 2 7 7 C 1.55138 * 103.01580 * 22.28188 * 6 5 4 8 8 C 1.47851 * 111.00406 * 180.71637 * 4 2 1 9 9 H 1.08996 * 110.36809 * 332.46904 * 8 4 2 10 10 C 1.50700 * 110.37040 * 94.80730 * 8 4 2 11 11 N 1.29521 * 124.56437 * 45.02958 * 10 8 4 12 12 C 1.30672 * 117.63603 * 179.97438 * 11 10 8 13 13 C 1.38593 * 113.54549 * 359.97438 * 12 11 10 14 14 C 1.40046 * 126.24954 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99236 * 179.97438 * 14 13 12 16 16 C 1.40068 * 120.00144 * 359.97438 * 14 13 12 17 17 N 1.30862 * 120.00123 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00020 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46775 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47439 * 120.00074 * 18 16 14 21 21 H 1.48501 * 109.47280 * 240.00087 * 18 16 14 22 22 S 1.70882 * 124.55917 * 224.72353 * 10 8 4 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 1.09004 * 109.88723 * 242.66283 * 5 4 2 31 31 H 1.08996 * 109.89075 * 3.69470 * 5 4 2 32 32 H 1.08997 * 110.70581 * 140.66706 * 6 5 4 33 33 H 1.08995 * 110.69964 * 263.89818 * 6 5 4 34 34 H 1.08998 * 110.99260 * 82.44390 * 7 6 5 35 35 H 1.09002 * 110.98877 * 206.21579 * 7 6 5 36 36 H 1.07997 * 123.22662 * 180.02562 * 12 11 10 37 37 H 0.97002 * 120.00288 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5445 -2.0878 1.2349 6 6 2.7909 -2.9931 1.3283 7 6 3.8695 -2.0433 1.9125 8 6 3.4976 -0.6973 1.2422 9 1 3.9065 -0.6501 0.2329 10 6 4.0022 0.4575 2.0685 11 7 3.5189 0.8043 3.2191 12 6 4.0614 1.8300 3.8201 13 6 5.1029 2.4023 3.1071 14 6 5.8671 3.5078 3.5011 15 1 6.6593 3.8713 2.8635 16 6 5.6039 4.1418 4.7221 17 7 4.6436 3.7015 5.4944 18 14 6.6228 5.6166 5.2473 19 1 7.6379 5.9135 4.2048 20 1 5.7352 6.7939 5.4242 21 1 7.3059 5.3146 6.5308 22 16 5.2939 1.4811 1.6171 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 0.9088 -2.2409 2.1070 31 1 0.9871 -2.3130 0.3257 32 1 2.6092 -3.8306 2.0017 33 1 3.0841 -3.3481 0.3404 34 1 3.7845 -1.9761 2.9971 35 1 4.8701 -2.3623 1.6204 36 1 3.7304 2.1959 4.7808 37 1 4.4616 4.1403 6.3401 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260966273.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:14 Heat of formation + Delta-G solvation = 26.163169 kcal Electronic energy + Delta-G solvation = -18447.330287 eV Core-core repulsion = 15736.399566 eV Total energy + Delta-G solvation = -2710.930721 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.12046 -37.10201 -34.17885 -33.90781 -30.28242 -28.74905 -28.63574 -26.48198 -24.79836 -23.02639 -21.35943 -20.56937 -19.71092 -18.64197 -16.90413 -16.46707 -15.50991 -15.27725 -14.66682 -14.25175 -13.63300 -13.21131 -13.12951 -12.84906 -12.49061 -12.09417 -12.02403 -11.75599 -11.67225 -11.48617 -11.32918 -11.25592 -10.89153 -10.80934 -10.70100 -10.54757 -10.44039 -10.28529 -10.22858 -9.67291 -9.54025 -7.89148 -7.79360 -7.66524 -7.09652 -6.92425 -4.51796 2.46147 2.91588 2.98358 3.04039 3.23146 3.63782 3.77687 4.35738 4.59774 4.98600 5.08139 5.24784 5.28130 5.36808 5.47708 5.68441 5.71290 5.77251 5.88076 5.98016 6.10431 6.14989 6.17590 6.21764 6.31060 6.33881 6.42613 6.62590 6.73720 6.77413 6.90827 7.21446 7.47827 7.57654 7.70279 7.85086 8.20888 8.41753 8.74464 9.88035 9.98222 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.005431 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.263600 B = 5154.766684 C = 5380.410010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 C -0.144 4.144 4 N -0.503 5.503 5 C 0.045 3.955 6 C -0.143 4.143 7 C -0.116 4.116 8 C 0.187 3.813 9 H 0.047 0.953 10 C -0.101 4.101 11 N -0.395 5.395 12 C -0.142 4.142 13 C 0.018 3.982 14 C -0.378 4.378 15 H 0.085 0.915 16 C 0.064 3.936 17 N -0.766 5.766 18 Si 0.933 3.067 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.269 1.269 22 S -0.079 6.079 23 H 0.064 0.936 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.194 0.806 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 -5.258 -6.383 8.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 C -0.202 4.202 4 N -0.229 5.229 5 C -0.083 4.083 6 C -0.182 4.182 7 C -0.155 4.155 8 C 0.076 3.924 9 H 0.065 0.935 10 C -0.371 4.371 11 N -0.106 5.106 12 C -0.296 4.296 13 C -0.103 4.103 14 C -0.415 4.415 15 H 0.103 0.897 16 C -0.158 4.158 17 N -0.391 5.391 18 Si 0.756 3.244 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.194 1.194 22 S 0.171 5.829 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.210 0.790 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.947 -5.316 -6.433 8.850 hybrid contribution 0.434 0.591 0.326 0.803 sum -2.513 -4.725 -6.107 8.120 Atomic orbital electron populations 1.21885 0.94969 1.01277 1.01869 1.21699 0.95083 0.95787 0.90439 1.21901 1.02441 0.94697 1.01143 1.63471 1.08752 1.13030 1.37610 1.22778 0.96758 0.87983 1.00766 1.22794 0.96405 0.98423 1.00536 1.22721 0.97494 0.93473 1.01805 1.20366 0.86155 0.91259 0.94607 0.93498 1.24605 1.05169 1.07525 0.99804 1.65286 1.25987 1.13464 1.05867 1.23154 1.02128 0.98644 1.05690 1.23304 0.98019 0.97082 0.91914 1.19040 1.12817 1.07657 1.01962 0.89667 1.26090 0.95240 0.98959 0.95531 1.69498 1.23849 1.35958 1.09776 0.85841 0.79799 0.79362 0.79422 1.18140 1.19389 1.19393 1.82982 1.40562 1.31846 1.27517 0.91734 0.93091 0.92850 0.95365 0.91732 0.91497 0.93572 0.90984 0.93295 0.91216 0.92152 0.90050 0.91537 0.79031 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.06 37.16 0.34 -1.65 16 2 C 0.08 1.29 2.26 -67.72 -0.15 1.13 16 3 C -0.14 -2.60 8.46 37.16 0.31 -2.29 16 4 N -0.50 -9.20 4.68 -216.83 -1.01 -10.22 16 5 C 0.05 0.68 6.15 -2.83 -0.02 0.66 16 6 C -0.14 -1.99 6.94 -24.91 -0.17 -2.16 16 7 C -0.12 -2.00 6.48 -24.60 -0.16 -2.16 16 8 C 0.19 3.66 2.32 -67.34 -0.16 3.50 16 9 H 0.05 0.89 7.58 -51.93 -0.39 0.50 16 10 C -0.10 -2.37 4.59 -13.25 -0.06 -2.43 16 11 N -0.40 -10.44 10.46 -10.84 -0.11 -10.55 16 12 C -0.14 -3.94 10.55 -17.91 -0.19 -4.13 16 13 C 0.02 0.49 6.30 -38.77 -0.24 0.24 16 14 C -0.38 -9.65 9.42 -38.22 -0.36 -10.01 16 15 H 0.09 2.06 7.85 -52.49 -0.41 1.65 16 16 C 0.06 1.53 5.50 -17.28 -0.09 1.43 16 17 N -0.77 -18.90 10.18 55.56 0.57 -18.33 16 18 Si 0.93 17.55 29.56 -169.99 -5.03 12.52 16 19 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 20 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 22 S -0.08 -1.87 22.25 -107.50 -2.39 -4.26 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.64 6.49 -51.93 -0.34 0.30 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.03 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.07 1.33 5.38 -51.93 -0.28 1.05 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.65 6.33 -51.93 -0.33 0.32 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.59 8.05 -51.93 -0.42 1.17 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.19 5.53 5.36 -52.49 -0.28 5.25 16 37 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 305.05 15.07 4.60 4.60 Total: -1.00 -27.59 305.05 -9.73 -37.32 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.39 Total: 6.78 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -0.96 Total: -17.86 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: -0.56 Total: -39.10 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -2.39 Total: -4.26 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.59 -9.73 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966273.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.483 kcal (2) G-P(sol) polarization free energy of solvation -27.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds