Wall clock time and date at job start Mon Mar 30 2020 07:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3 5 5 C 1.47446 * 110.99734 * 59.87440 * 4 2 1 6 6 C 1.54325 * 107.23429 * 123.26132 * 5 4 2 7 7 C 1.55138 * 103.01580 * 22.28188 * 6 5 4 8 8 C 1.47851 * 111.00406 * 180.71637 * 4 2 1 9 9 H 1.08996 * 110.36809 * 332.46904 * 8 4 2 10 10 C 1.50700 * 110.37040 * 94.80730 * 8 4 2 11 11 N 1.29521 * 124.56437 * 45.02958 * 10 8 4 12 12 C 1.30672 * 117.63603 * 179.97438 * 11 10 8 13 13 C 1.38593 * 113.54549 * 359.97438 * 12 11 10 14 14 C 1.40046 * 126.24954 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99236 * 179.97438 * 14 13 12 16 16 C 1.40068 * 120.00144 * 359.97438 * 14 13 12 17 17 N 1.30862 * 120.00123 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00020 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46775 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47439 * 120.00074 * 18 16 14 21 21 H 1.48501 * 109.47280 * 240.00087 * 18 16 14 22 22 S 1.70882 * 124.55917 * 224.72353 * 10 8 4 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 1.09004 * 109.88723 * 242.66283 * 5 4 2 31 31 H 1.08996 * 109.89075 * 3.69470 * 5 4 2 32 32 H 1.08997 * 110.70581 * 140.66706 * 6 5 4 33 33 H 1.08995 * 110.69964 * 263.89818 * 6 5 4 34 34 H 1.08998 * 110.99260 * 82.44390 * 7 6 5 35 35 H 1.09002 * 110.98877 * 206.21579 * 7 6 5 36 36 H 1.07997 * 123.22662 * 180.02562 * 12 11 10 37 37 H 0.97002 * 120.00288 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5445 -2.0878 1.2349 6 6 2.7909 -2.9931 1.3283 7 6 3.8695 -2.0433 1.9125 8 6 3.4976 -0.6973 1.2422 9 1 3.9065 -0.6501 0.2329 10 6 4.0022 0.4575 2.0685 11 7 3.5189 0.8043 3.2191 12 6 4.0614 1.8300 3.8201 13 6 5.1029 2.4023 3.1071 14 6 5.8671 3.5078 3.5011 15 1 6.6593 3.8713 2.8635 16 6 5.6039 4.1418 4.7221 17 7 4.6436 3.7015 5.4944 18 14 6.6228 5.6166 5.2473 19 1 7.6379 5.9135 4.2048 20 1 5.7352 6.7939 5.4242 21 1 7.3059 5.3146 6.5308 22 16 5.2939 1.4811 1.6171 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 0.9088 -2.2409 2.1070 31 1 0.9871 -2.3130 0.3257 32 1 2.6092 -3.8306 2.0017 33 1 3.0841 -3.3481 0.3404 34 1 3.7845 -1.9761 2.9971 35 1 4.8701 -2.3623 1.6204 36 1 3.7304 2.1959 4.7808 37 1 4.4616 4.1403 6.3401 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966273.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:14 Heat of formation + Delta-G solvation = 9.107684 kcal Electronic energy + Delta-G solvation = -18448.069869 eV Core-core repulsion = 15736.399566 eV Total energy + Delta-G solvation = -2711.670302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.55564 -38.97923 -35.96159 -35.27211 -31.94542 -30.36798 -30.06220 -27.80831 -26.57448 -24.82309 -22.82664 -22.04142 -21.14686 -20.36527 -18.64976 -18.30991 -16.95077 -16.75625 -16.32549 -15.58842 -15.30996 -14.67767 -14.60172 -14.30304 -14.06339 -13.82089 -13.50079 -13.26779 -13.14144 -13.08627 -12.95910 -12.79635 -12.23192 -12.18272 -12.00387 -11.92488 -11.86586 -11.70990 -11.53595 -11.52072 -11.39602 -9.85646 -9.71656 -9.06168 -9.04245 -8.73326 -6.48755 0.62608 1.24482 1.41197 1.51099 1.57386 1.70909 2.14676 2.56508 3.08502 3.25896 3.71206 3.90330 4.02289 4.13083 4.17001 4.22905 4.37835 4.45095 4.66081 4.72969 4.78188 4.88419 4.92545 4.95590 4.98120 4.99768 5.07855 5.17273 5.27339 5.36611 5.41113 5.43131 5.57185 5.87588 6.19630 6.28929 6.39418 6.49578 6.67612 7.99531 8.10890 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.005431 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.263600 B = 5154.766684 C = 5380.410010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.077 3.923 3 C -0.139 4.139 4 N -0.531 5.531 5 C 0.044 3.956 6 C -0.128 4.128 7 C -0.116 4.116 8 C 0.182 3.818 9 H 0.056 0.944 10 C -0.078 4.078 11 N -0.424 5.424 12 C -0.182 4.182 13 C -0.014 4.014 14 C -0.406 4.406 15 H 0.093 0.907 16 C 0.023 3.977 17 N -0.797 5.797 18 Si 1.012 2.988 19 H -0.251 1.251 20 H -0.260 1.260 21 H -0.260 1.260 22 S -0.058 6.058 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.025 0.975 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.174 0.826 37 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 -6.056 -8.018 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.031 4.031 3 C -0.197 4.197 4 N -0.257 5.257 5 C -0.083 4.083 6 C -0.166 4.166 7 C -0.156 4.156 8 C 0.071 3.929 9 H 0.074 0.926 10 C -0.351 4.351 11 N -0.135 5.135 12 C -0.333 4.333 13 C -0.136 4.136 14 C -0.442 4.442 15 H 0.111 0.889 16 C -0.196 4.196 17 N -0.421 5.421 18 Si 0.830 3.170 19 H -0.174 1.174 20 H -0.185 1.185 21 H -0.184 1.184 22 S 0.192 5.808 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.191 0.809 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.944 -6.119 -8.053 10.533 hybrid contribution 0.366 0.772 0.773 1.152 sum -2.578 -5.346 -7.280 9.393 Atomic orbital electron populations 1.21829 0.93014 1.02530 1.01868 1.21780 0.96589 0.94244 0.90489 1.21850 1.00923 0.96396 1.00533 1.63310 1.07686 1.15528 1.39224 1.22845 0.97411 0.86231 1.01853 1.22758 0.94046 0.97803 1.02018 1.22675 0.99656 0.93342 0.99917 1.20489 0.87536 0.90559 0.94357 0.92573 1.25507 1.03627 1.07138 0.98859 1.65278 1.27004 1.13907 1.07289 1.22960 1.03894 1.00351 1.06108 1.23621 0.98433 0.98173 0.93325 1.19415 1.13342 1.08082 1.03351 0.88937 1.27189 0.96064 1.01651 0.94724 1.69566 1.24932 1.37256 1.10389 0.84700 0.78029 0.75083 0.79188 1.17406 1.18485 1.18396 1.82714 1.40632 1.31394 1.26078 0.93926 0.91173 0.90679 0.93295 0.95544 0.93662 0.90894 0.91624 0.90564 0.89342 0.89649 0.93076 0.90254 0.80937 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.06 71.98 0.65 -2.78 16 2 C 0.08 2.37 2.26 44.92 0.10 2.47 16 3 C -0.14 -4.98 8.46 71.98 0.61 -4.37 16 4 N -0.53 -18.77 4.68 -839.93 -3.93 -22.69 16 5 C 0.04 1.20 6.15 86.65 0.53 1.73 16 6 C -0.13 -3.12 6.94 31.78 0.22 -2.90 16 7 C -0.12 -3.87 6.48 31.98 0.21 -3.66 16 8 C 0.18 6.97 2.32 44.64 0.10 7.07 16 9 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 10 C -0.08 -3.76 4.59 88.45 0.41 -3.35 16 11 N -0.42 -23.41 10.46 -188.22 -1.97 -25.38 16 12 C -0.18 -10.66 10.55 84.95 0.90 -9.76 16 13 C -0.01 -0.79 6.30 22.79 0.14 -0.65 16 14 C -0.41 -21.36 9.42 23.15 0.22 -21.14 16 15 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 16 C 0.02 1.12 5.50 85.28 0.47 1.58 16 17 N -0.80 -40.77 10.18 21.86 0.22 -40.55 16 18 Si 1.01 35.75 29.56 68.60 2.03 37.77 16 19 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 20 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 21 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 22 S -0.06 -2.82 22.25 -56.49 -1.26 -4.08 16 23 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.07 1.51 6.49 -2.39 -0.02 1.49 16 25 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.05 1.33 8.10 -2.39 -0.02 1.32 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 1.78 5.38 -2.39 -0.01 1.77 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.08 1.67 6.33 -2.39 -0.02 1.66 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 2.00 8.05 -2.39 -0.02 1.98 16 35 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.17 10.67 5.36 -2.91 -0.02 10.66 16 37 H 0.30 13.44 8.30 -92.71 -0.77 12.68 16 Total: -1.00 -63.46 305.05 0.71 -62.75 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 1.06 Total: 27.95 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 4.56 Total: -35.77 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -5.67 Total: -88.62 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.77 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -1.26 Total: -4.08 kcal Total: -63.46 0.71 -62.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966273.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.854 kcal (2) G-P(sol) polarization free energy of solvation -63.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds