Wall clock time and date at job start Mon Mar 30 2020 07:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47204 * 2 1 4 4 N 1.46911 * 109.46897 * 119.99877 * 2 1 3 5 5 C 1.47848 * 110.99612 * 47.21529 * 4 2 1 6 6 C 1.54905 * 104.79237 * 146.36402 * 5 4 2 7 7 C 1.55148 * 101.65521 * 322.92785 * 6 5 4 8 8 C 1.47442 * 110.99878 * 168.05411 * 4 2 1 9 9 H 1.08998 * 109.88296 * 117.17161 * 8 4 2 10 10 C 1.50706 * 109.89072 * 356.15414 * 8 4 2 11 11 N 1.29518 * 124.55766 * 295.45321 * 10 8 4 12 12 C 1.30675 * 117.63251 * 180.02562 * 11 10 8 13 13 C 1.38580 * 113.54968 * 359.97438 * 12 11 10 14 14 C 1.40043 * 126.25876 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00328 * 180.02562 * 14 13 12 16 16 C 1.40075 * 119.99308 * 0.03337 * 14 13 12 17 17 N 1.30856 * 120.00252 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99677 * 179.72149 * 16 14 13 19 19 H 1.48503 * 109.47264 * 59.99408 * 18 16 14 20 20 H 1.48503 * 109.47382 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47021 * 299.99830 * 18 16 14 22 22 S 1.70884 * 124.56453 * 115.78462 * 10 8 4 23 23 H 1.09001 * 109.46877 * 300.00255 * 1 2 3 24 24 H 1.09001 * 109.46696 * 60.00356 * 1 2 3 25 25 H 1.08996 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47719 * 239.99518 * 2 1 3 27 27 H 1.09002 * 109.46884 * 53.02865 * 3 2 1 28 28 H 1.08997 * 109.46672 * 173.02247 * 3 2 1 29 29 H 1.08994 * 109.47066 * 293.02815 * 3 2 1 30 30 H 1.08997 * 110.37072 * 265.19131 * 5 4 2 31 31 H 1.08994 * 110.37805 * 27.42305 * 5 4 2 32 32 H 1.08999 * 110.99588 * 81.01595 * 6 5 4 33 33 H 1.09000 * 110.99384 * 204.80025 * 6 5 4 34 34 H 1.09003 * 110.70319 * 277.27251 * 7 6 5 35 35 H 1.09001 * 110.70383 * 154.03589 * 7 6 5 36 36 H 1.08001 * 123.22631 * 179.97438 * 12 11 10 37 37 H 0.97001 * 119.99749 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1996 5 6 1.3123 -1.9758 1.3962 6 6 2.3712 -2.9199 2.0183 7 6 3.6577 -2.4858 1.2675 8 6 3.4655 -0.9639 1.0998 9 1 3.9979 -0.4314 1.8878 10 6 3.9771 -0.5281 -0.2491 11 7 3.6160 -1.0533 -1.3766 12 6 4.1470 -0.5695 -2.4682 13 6 5.0416 0.4636 -2.2381 14 6 5.7594 1.1698 -3.2112 15 1 6.4336 1.9606 -2.9172 16 6 5.6027 0.8506 -4.5661 17 7 4.7861 -0.1078 -4.9224 18 14 6.5543 1.7978 -5.8649 19 1 8.0113 1.6393 -5.6250 20 1 6.2145 1.2702 -7.2107 21 1 6.1943 3.2367 -5.7913 22 16 5.1177 0.7201 -0.4963 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8935 -0.5139 -0.8899 27 1 1.5785 1.9911 0.8211 28 1 3.1229 1.4449 0.1248 29 1 1.7822 1.9190 -0.9457 30 1 0.4725 -1.8454 2.0787 31 1 0.9660 -2.3687 0.4403 32 1 2.4675 -2.7465 3.0901 33 1 2.1324 -3.9635 1.8135 34 1 3.7207 -2.9757 0.2958 35 1 4.5435 -2.6988 1.8659 36 1 3.9113 -0.9393 -3.4552 37 1 4.6779 -0.3290 -5.8606 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260966274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:16 Heat of formation + Delta-G solvation = 39.803381 kcal Electronic energy + Delta-G solvation = -18857.444583 eV Core-core repulsion = 16147.105346 eV Total energy + Delta-G solvation = -2710.339237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.45078 -37.00858 -34.18034 -33.76140 -30.32562 -28.72582 -28.49241 -26.26983 -24.82890 -23.13377 -21.45392 -20.56288 -19.29814 -18.81360 -16.70621 -16.57423 -15.53174 -15.18150 -14.83314 -14.23388 -13.69042 -13.38574 -12.98335 -12.84327 -12.31780 -12.02616 -11.83065 -11.61869 -11.58669 -11.40142 -11.38586 -11.24309 -10.86220 -10.68261 -10.54355 -10.35312 -10.29790 -10.22934 -10.09772 -9.68487 -9.61577 -8.18464 -7.91374 -7.49449 -7.05434 -7.01375 -4.63100 2.34529 2.85377 2.89264 2.98343 3.15938 3.56951 3.69396 4.27765 4.65691 4.99625 5.13563 5.23357 5.46375 5.71357 5.74697 5.81622 5.91225 5.96783 6.06984 6.20307 6.21927 6.36753 6.37842 6.42488 6.46474 6.56133 6.62651 6.67097 6.81626 7.07111 7.10043 7.13791 7.40047 7.69605 7.72982 7.82084 8.08201 8.30002 8.60203 9.72421 9.76902 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030422 B = 0.006022 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.161698 B = 4648.636875 C = 4830.082057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 C -0.149 4.149 4 N -0.513 5.513 5 C 0.045 3.955 6 C -0.129 4.129 7 C -0.126 4.126 8 C 0.180 3.820 9 H 0.077 0.923 10 C -0.139 4.139 11 N -0.413 5.413 12 C -0.142 4.142 13 C 0.017 3.983 14 C -0.373 4.373 15 H 0.086 0.914 16 C 0.065 3.935 17 N -0.764 5.764 18 Si 0.934 3.066 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.260 1.260 22 S -0.052 6.052 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.195 0.805 37 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 -0.867 4.899 5.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.054 4.054 3 C -0.208 4.208 4 N -0.239 5.239 5 C -0.083 4.083 6 C -0.167 4.167 7 C -0.166 4.166 8 C 0.069 3.931 9 H 0.095 0.905 10 C -0.407 4.407 11 N -0.126 5.126 12 C -0.296 4.296 13 C -0.104 4.104 14 C -0.410 4.410 15 H 0.105 0.895 16 C -0.158 4.158 17 N -0.388 5.388 18 Si 0.757 3.243 19 H -0.185 1.185 20 H -0.197 1.197 21 H -0.184 1.184 22 S 0.199 5.801 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.210 0.790 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.856 -0.495 5.911 6.584 hybrid contribution 0.301 -0.345 -2.142 2.190 sum -2.554 -0.839 3.770 4.630 Atomic orbital electron populations 1.21962 0.96439 1.00888 1.00993 1.22209 0.93083 0.95924 0.94160 1.22154 1.04163 0.94847 0.99605 1.64079 1.02801 1.19230 1.37759 1.22952 0.96707 0.89562 0.99117 1.22681 0.95751 0.98660 0.99654 1.22802 0.97029 0.95882 1.00863 1.20438 0.88010 0.93965 0.90715 0.90467 1.25124 1.11483 1.07180 0.96870 1.65273 1.22721 1.26501 0.98116 1.23085 1.06192 1.03423 0.96918 1.23287 0.98098 0.97730 0.91298 1.19029 1.18466 1.13575 0.89949 0.89543 1.26123 0.94925 0.94897 0.99892 1.69459 1.26887 1.22652 1.19806 0.85908 0.80196 0.80154 0.78026 1.18481 1.19722 1.18448 1.83011 1.48267 1.41935 1.06910 0.93070 0.92997 0.93267 0.88772 0.94132 0.89901 0.93766 0.91354 0.93630 0.91392 0.91604 0.90433 0.91787 0.78953 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.81 37.16 0.33 -2.10 16 2 C 0.05 1.07 2.12 -67.70 -0.14 0.93 16 3 C -0.15 -3.00 8.94 37.16 0.33 -2.67 16 4 N -0.51 -9.58 5.03 -216.80 -1.09 -10.67 16 5 C 0.04 0.72 5.31 -2.30 -0.01 0.71 16 6 C -0.13 -1.89 7.08 -24.59 -0.17 -2.06 16 7 C -0.13 -2.20 6.45 -24.91 -0.16 -2.36 16 8 C 0.18 3.53 3.62 -67.88 -0.25 3.28 16 9 H 0.08 1.50 8.13 -51.93 -0.42 1.07 16 10 C -0.14 -3.15 3.34 -13.25 -0.04 -3.20 16 11 N -0.41 -10.29 7.56 -10.84 -0.08 -10.37 16 12 C -0.14 -3.76 10.55 -17.92 -0.19 -3.95 16 13 C 0.02 0.45 6.30 -38.78 -0.24 0.21 16 14 C -0.37 -9.22 9.42 -38.22 -0.36 -9.58 16 15 H 0.09 2.01 7.85 -52.49 -0.41 1.60 16 16 C 0.06 1.49 5.50 -17.28 -0.09 1.40 16 17 N -0.76 -18.18 10.18 55.56 0.57 -17.61 16 18 Si 0.93 17.03 29.56 -169.99 -5.03 12.00 16 19 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 20 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 21 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 22 S -0.05 -1.21 20.88 -107.50 -2.24 -3.45 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.77 6.38 -51.93 -0.33 0.44 16 26 H 0.10 2.18 4.78 -51.93 -0.25 1.94 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.79 3.77 -37.39 -0.14 1.65 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.78 6.89 -51.93 -0.36 0.43 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.53 7.49 -51.93 -0.39 1.14 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.19 5.31 5.36 -52.49 -0.28 5.03 16 37 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -25.72 296.04 -9.52 -35.25 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.10 Total: 9.79 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -1.01 Total: -19.40 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.61 Total: -38.65 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.24 Total: -3.45 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -25.72 -9.52 -35.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.050 kcal (2) G-P(sol) polarization free energy of solvation -25.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds