Wall clock time and date at job start Mon Mar 30 2020 07:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47204 * 2 1 4 4 N 1.46911 * 109.46897 * 119.99877 * 2 1 3 5 5 C 1.47848 * 110.99612 * 47.21529 * 4 2 1 6 6 C 1.54905 * 104.79237 * 146.36402 * 5 4 2 7 7 C 1.55148 * 101.65521 * 322.92785 * 6 5 4 8 8 C 1.47442 * 110.99878 * 168.05411 * 4 2 1 9 9 H 1.08998 * 109.88296 * 117.17161 * 8 4 2 10 10 C 1.50706 * 109.89072 * 356.15414 * 8 4 2 11 11 N 1.29518 * 124.55766 * 295.45321 * 10 8 4 12 12 C 1.30675 * 117.63251 * 180.02562 * 11 10 8 13 13 C 1.38580 * 113.54968 * 359.97438 * 12 11 10 14 14 C 1.40043 * 126.25876 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00328 * 180.02562 * 14 13 12 16 16 C 1.40075 * 119.99308 * 0.03337 * 14 13 12 17 17 N 1.30856 * 120.00252 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99677 * 179.72149 * 16 14 13 19 19 H 1.48503 * 109.47264 * 59.99408 * 18 16 14 20 20 H 1.48503 * 109.47382 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47021 * 299.99830 * 18 16 14 22 22 S 1.70884 * 124.56453 * 115.78462 * 10 8 4 23 23 H 1.09001 * 109.46877 * 300.00255 * 1 2 3 24 24 H 1.09001 * 109.46696 * 60.00356 * 1 2 3 25 25 H 1.08996 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47719 * 239.99518 * 2 1 3 27 27 H 1.09002 * 109.46884 * 53.02865 * 3 2 1 28 28 H 1.08997 * 109.46672 * 173.02247 * 3 2 1 29 29 H 1.08994 * 109.47066 * 293.02815 * 3 2 1 30 30 H 1.08997 * 110.37072 * 265.19131 * 5 4 2 31 31 H 1.08994 * 110.37805 * 27.42305 * 5 4 2 32 32 H 1.08999 * 110.99588 * 81.01595 * 6 5 4 33 33 H 1.09000 * 110.99384 * 204.80025 * 6 5 4 34 34 H 1.09003 * 110.70319 * 277.27251 * 7 6 5 35 35 H 1.09001 * 110.70383 * 154.03589 * 7 6 5 36 36 H 1.08001 * 123.22631 * 179.97438 * 12 11 10 37 37 H 0.97001 * 119.99749 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1996 5 6 1.3123 -1.9758 1.3962 6 6 2.3712 -2.9199 2.0183 7 6 3.6577 -2.4858 1.2675 8 6 3.4655 -0.9639 1.0998 9 1 3.9979 -0.4314 1.8878 10 6 3.9771 -0.5281 -0.2491 11 7 3.6160 -1.0533 -1.3766 12 6 4.1470 -0.5695 -2.4682 13 6 5.0416 0.4636 -2.2381 14 6 5.7594 1.1698 -3.2112 15 1 6.4336 1.9606 -2.9172 16 6 5.6027 0.8506 -4.5661 17 7 4.7861 -0.1078 -4.9224 18 14 6.5543 1.7978 -5.8649 19 1 8.0113 1.6393 -5.6250 20 1 6.2145 1.2702 -7.2107 21 1 6.1943 3.2367 -5.7913 22 16 5.1177 0.7201 -0.4963 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8935 -0.5139 -0.8899 27 1 1.5785 1.9911 0.8211 28 1 3.1229 1.4449 0.1248 29 1 1.7822 1.9190 -0.9457 30 1 0.4725 -1.8454 2.0787 31 1 0.9660 -2.3687 0.4403 32 1 2.4675 -2.7465 3.0901 33 1 2.1324 -3.9635 1.8135 34 1 3.7207 -2.9757 0.2958 35 1 4.5435 -2.6988 1.8659 36 1 3.9113 -0.9393 -3.4552 37 1 4.6779 -0.3290 -5.8606 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:16 Heat of formation + Delta-G solvation = 24.893839 kcal Electronic energy + Delta-G solvation = -18858.091110 eV Core-core repulsion = 16147.105346 eV Total energy + Delta-G solvation = -2710.985763 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04048 -38.76600 -35.96609 -35.22061 -31.99637 -30.40380 -29.95352 -27.76054 -26.59643 -24.87936 -23.05772 -21.94238 -20.96473 -20.52721 -18.46683 -18.34787 -17.05463 -16.71493 -16.49261 -15.77410 -15.36729 -14.86248 -14.50698 -14.29627 -14.07261 -13.67505 -13.33868 -13.27550 -13.07530 -13.05704 -12.93745 -12.81910 -12.28354 -12.08936 -11.96979 -11.89041 -11.74175 -11.73882 -11.56188 -11.50056 -11.34389 -9.99225 -9.77065 -9.16614 -8.85643 -8.77203 -6.53020 0.55562 1.22219 1.39770 1.51160 1.53191 1.69293 2.12416 2.47716 3.06315 3.21003 3.74433 3.85969 4.08926 4.23781 4.28606 4.32621 4.48278 4.65543 4.66734 4.78919 4.82382 4.90554 4.96606 4.97548 5.01099 5.10602 5.15905 5.17625 5.25509 5.39280 5.46659 5.49753 5.60700 5.83057 6.18457 6.22304 6.30458 6.44363 6.62022 7.81609 8.05370 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030422 B = 0.006022 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.161698 B = 4648.636875 C = 4830.082057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.052 3.948 3 C -0.146 4.146 4 N -0.510 5.510 5 C 0.041 3.959 6 C -0.115 4.115 7 C -0.125 4.125 8 C 0.172 3.828 9 H 0.084 0.916 10 C -0.118 4.118 11 N -0.427 5.427 12 C -0.179 4.179 13 C -0.011 4.011 14 C -0.401 4.401 15 H 0.094 0.906 16 C 0.026 3.974 17 N -0.792 5.792 18 Si 1.010 2.990 19 H -0.254 1.254 20 H -0.262 1.262 21 H -0.255 1.255 22 S -0.040 6.040 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.030 0.970 30 H 0.094 0.906 31 H 0.031 0.969 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.176 0.824 37 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 -0.764 6.115 6.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.057 4.057 3 C -0.205 4.205 4 N -0.235 5.235 5 C -0.087 4.087 6 C -0.153 4.153 7 C -0.165 4.165 8 C 0.060 3.940 9 H 0.102 0.898 10 C -0.388 4.388 11 N -0.139 5.139 12 C -0.331 4.331 13 C -0.133 4.133 14 C -0.438 4.438 15 H 0.112 0.888 16 C -0.195 4.195 17 N -0.416 5.416 18 Si 0.828 3.172 19 H -0.178 1.178 20 H -0.186 1.186 21 H -0.179 1.179 22 S 0.211 5.789 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.192 0.808 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.174 -0.408 7.118 7.804 hybrid contribution 0.338 -0.407 -2.424 2.481 sum -2.836 -0.816 4.694 5.544 Atomic orbital electron populations 1.21872 0.93918 1.01852 1.01786 1.22119 0.95228 0.95160 0.93157 1.22093 1.03166 0.95618 0.99590 1.64127 1.02169 1.20614 1.36547 1.23101 0.97757 0.88625 0.99192 1.22675 0.92975 0.99311 1.00368 1.22755 0.99673 0.93846 1.00231 1.20681 0.88899 0.95642 0.88757 0.89844 1.25801 1.09833 1.05551 0.97656 1.65288 1.23061 1.27199 0.98377 1.22896 1.08136 1.05074 0.96956 1.23586 0.98593 0.98106 0.92997 1.19415 1.19115 1.14182 0.91081 0.88816 1.27167 0.95425 0.95438 1.01435 1.69525 1.27629 1.23590 1.20884 0.84812 0.78667 0.78604 0.75127 1.17782 1.18563 1.17864 1.82801 1.48463 1.42279 1.05309 0.91428 0.93013 0.92242 0.92423 0.92206 0.91597 0.95124 0.88751 0.95075 0.89039 0.89663 0.93341 0.90010 0.80763 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 8.81 71.98 0.63 -3.71 16 2 C 0.05 2.03 2.12 44.92 0.10 2.12 16 3 C -0.15 -5.86 8.94 71.98 0.64 -5.22 16 4 N -0.51 -18.10 5.03 -839.83 -4.22 -22.32 16 5 C 0.04 1.21 5.31 86.77 0.46 1.67 16 6 C -0.12 -2.99 7.08 31.98 0.23 -2.76 16 7 C -0.13 -4.17 6.45 31.78 0.21 -3.96 16 8 C 0.17 6.55 3.62 44.51 0.16 6.71 16 9 H 0.08 3.09 8.13 -2.39 -0.02 3.07 16 10 C -0.12 -5.44 3.34 88.45 0.30 -5.14 16 11 N -0.43 -22.03 7.56 -188.22 -1.42 -23.45 16 12 C -0.18 -9.95 10.55 84.95 0.90 -9.06 16 13 C -0.01 -0.61 6.30 22.79 0.14 -0.47 16 14 C -0.40 -20.42 9.42 23.15 0.22 -20.20 16 15 H 0.09 4.45 7.85 -2.91 -0.02 4.42 16 16 C 0.03 1.20 5.50 85.28 0.47 1.66 16 17 N -0.79 -38.94 10.18 21.86 0.22 -38.72 16 18 Si 1.01 34.56 29.56 68.60 2.03 36.59 16 19 H -0.25 -8.38 7.11 99.48 0.71 -7.68 16 20 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 21 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 22 S -0.04 -1.87 20.88 -56.49 -1.18 -3.05 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.75 6.38 -2.39 -0.02 1.74 16 26 H 0.06 2.74 4.78 -2.39 -0.01 2.73 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.07 2.86 3.77 -11.63 -0.04 2.81 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.03 1.02 6.89 -2.39 -0.02 1.00 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.90 7.49 -2.39 -0.02 1.88 16 35 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.18 10.26 5.36 -2.91 -0.02 10.24 16 37 H 0.30 13.05 8.30 -92.71 -0.77 12.28 16 Total: -1.00 -57.72 296.04 0.91 -56.81 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 1.03 Total: 32.49 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 4.45 Total: -38.34 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -5.42 Total: -84.49 kcal Atomic # 14 Polarization: 34.56 SS G_CDS: 2.03 Total: 36.59 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -1.18 Total: -3.05 kcal Total: -57.72 0.91 -56.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.700 kcal (2) G-P(sol) polarization free energy of solvation -57.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds