Wall clock time and date at job start Mon Mar 30 2020 07:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48531 * 111.00008 * 2 1 4 4 C 1.54935 * 103.22620 * 200.27908 * 3 2 1 5 5 C 1.54591 * 102.92444 * 37.41328 * 4 3 2 6 6 H 1.08999 * 110.39450 * 97.00015 * 5 4 3 7 7 C 1.53000 * 110.31272 * 219.12870 * 5 4 3 8 8 C 1.50699 * 109.47419 * 182.16968 * 7 5 4 9 9 N 1.29027 * 124.91918 * 89.95253 * 8 7 5 10 10 C 1.31776 * 117.12568 * 180.02562 * 9 8 7 11 11 C 1.33635 * 114.50289 * 0.02562 * 10 9 8 12 12 C 1.50700 * 126.03862 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46948 * 89.96045 * 12 11 10 14 14 H 1.08004 * 120.00025 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99905 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00108 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 120.00022 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46937 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46858 * 120.00005 * 17 15 13 20 20 H 1.48501 * 109.47045 * 240.00081 * 17 15 13 21 21 S 1.70977 * 124.91502 * 270.00176 * 8 7 5 22 22 C 1.47897 * 111.00027 * 242.60028 * 2 1 3 23 23 H 1.08993 * 109.47219 * 177.39861 * 1 2 3 24 24 H 1.08997 * 109.47023 * 297.39697 * 1 2 3 25 25 H 1.09001 * 109.46709 * 57.39556 * 1 2 3 26 26 H 1.08999 * 110.67009 * 318.71343 * 3 2 1 27 27 H 1.08999 * 110.66771 * 81.67475 * 3 2 1 28 28 H 1.09002 * 110.71995 * 279.05427 * 4 3 2 29 29 H 1.09003 * 110.72642 * 155.77679 * 4 3 2 30 30 H 1.09000 * 109.47006 * 62.16551 * 7 5 4 31 31 H 1.09005 * 109.46837 * 302.16804 * 7 5 4 32 32 H 1.08004 * 122.74701 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.47229 * 209.95396 * 12 11 10 34 34 H 1.08995 * 109.47136 * 329.96040 * 12 11 10 35 35 H 0.97001 * 120.00314 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.91680 * 26.49362 * 22 2 1 37 37 H 1.08999 * 110.08639 * 265.28971 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2106 -0.5228 5 6 3.2983 0.1053 -1.5930 6 1 3.2143 0.5470 -2.5860 7 6 4.4896 -0.8532 -1.5382 8 6 4.3503 -1.8904 -2.6226 9 7 4.8147 -1.7733 -3.8206 10 6 4.6035 -2.7773 -4.6476 11 6 3.9226 -3.7979 -4.1179 12 6 3.5397 -5.0713 -4.8270 13 6 4.6324 -6.0937 -4.6485 14 1 5.5160 -5.8459 -4.0789 15 6 4.5046 -7.3450 -5.2131 16 7 3.4289 -7.6466 -5.9070 17 14 5.8594 -8.6121 -4.9925 18 1 6.9542 -8.0291 -4.1759 19 1 5.3113 -9.8078 -4.3032 20 1 6.3894 -9.0068 -6.3224 21 16 3.5527 -3.3921 -2.4437 22 6 1.9991 -0.6354 -1.2258 23 1 -0.3633 -1.0265 -0.0466 24 1 -0.3633 0.4729 0.9124 25 1 -0.3633 0.5538 -0.8657 26 1 1.4238 2.0205 -0.6729 27 1 2.0013 1.7987 1.0091 28 1 4.1115 0.8836 0.2788 29 1 3.8124 2.1352 -0.9715 30 1 4.5156 -1.3452 -0.5659 31 1 5.4132 -0.2937 -1.6871 32 1 4.9522 -2.7755 -5.6698 33 1 2.6103 -5.4558 -4.4067 34 1 3.4018 -4.8685 -5.8890 35 1 3.3388 -8.5271 -6.3040 36 1 1.2759 -0.5403 -2.0358 37 1 2.2117 -1.6882 -1.0399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260967114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:37 Heat of formation + Delta-G solvation = 29.962319 kcal Electronic energy + Delta-G solvation = -17510.348630 eV Core-core repulsion = 14799.582653 eV Total energy + Delta-G solvation = -2710.765977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49869 -38.68674 -34.27086 -33.33271 -31.24962 -29.96502 -27.81660 -26.24587 -25.11993 -23.38127 -22.24208 -21.34068 -20.36531 -18.28559 -17.39709 -16.44926 -16.16389 -15.80043 -14.81771 -14.39309 -14.32389 -13.94663 -13.55734 -13.49343 -13.13760 -12.76404 -12.43215 -12.09663 -11.84456 -11.77662 -11.62770 -11.53947 -11.25825 -10.97091 -10.84587 -10.79548 -10.69869 -10.29210 -9.96931 -9.62570 -8.98080 -8.60905 -8.51698 -8.46112 -7.92441 -6.14748 -4.20013 1.47718 2.04180 2.50665 3.24877 3.32537 3.37582 3.53646 3.89682 4.36050 4.37437 4.51792 4.72354 4.84102 5.12418 5.20665 5.20961 5.24424 5.28195 5.36842 5.52177 5.63920 5.70329 5.71654 5.82362 5.88652 5.95809 6.03950 6.17003 6.24004 6.32975 6.72454 6.84930 6.94096 7.32694 7.41124 7.79687 8.13856 8.39598 8.83882 9.44902 10.94840 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036318 B = 0.004052 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.791060 B = 6908.250087 C = 7222.019841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.033 3.967 4 C -0.118 4.118 5 C -0.091 4.091 6 H 0.080 0.920 7 C -0.023 4.023 8 C 0.002 3.998 9 N -0.464 5.464 10 C -0.014 4.014 11 C -0.134 4.134 12 C 0.082 3.918 13 C -0.516 4.516 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 S 0.092 5.908 22 C 0.035 3.965 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.027 0.973 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.169 0.831 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.045 0.955 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 16.028 10.715 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.095 4.095 4 C -0.156 4.156 5 C -0.112 4.112 6 H 0.099 0.901 7 C -0.064 4.064 8 C -0.276 4.276 9 N -0.179 5.179 10 C -0.162 4.162 11 C -0.255 4.255 12 C 0.042 3.958 13 C -0.555 4.555 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 S 0.345 5.655 22 C -0.093 4.093 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.186 0.814 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.488 15.604 11.742 19.837 hybrid contribution 0.649 -0.449 -1.720 1.892 sum -2.839 15.155 10.022 18.389 Atomic orbital electron populations 1.22522 0.87956 1.02281 1.00631 1.64750 1.08059 1.14685 1.37081 1.23256 0.95210 0.90111 1.00934 1.22555 0.96558 0.98231 0.98240 1.21999 0.94200 0.95333 0.99640 0.90137 1.20151 0.98900 0.93118 0.94236 1.26556 1.04921 0.99413 0.96710 1.66121 1.20272 1.29589 1.01896 1.21516 1.03838 0.89726 1.01076 1.26881 1.01255 1.02419 0.94976 1.17940 0.97480 0.85428 0.94931 1.21069 1.03889 0.96660 1.33883 0.92246 1.24997 0.95958 0.98305 0.94837 1.69951 1.27133 1.21690 1.34271 0.86424 0.81847 0.81122 0.78042 1.19580 1.20777 1.20780 1.83829 1.54339 1.13682 1.13686 1.23097 0.95512 0.99992 0.90684 0.91106 0.91379 0.95485 0.93882 0.90059 0.90266 0.90828 0.89785 0.89377 0.81425 0.94776 0.93755 0.92661 0.93614 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.40 60.07 0.56 0.70 16 2 N -0.52 -5.77 5.55 -238.72 -1.33 -7.09 16 3 C 0.03 0.30 6.56 -1.90 -0.01 0.29 16 4 C -0.12 -1.07 6.61 -24.87 -0.16 -1.23 16 5 C -0.09 -1.05 3.02 -89.26 -0.27 -1.32 16 6 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 7 C -0.02 -0.30 5.00 -27.88 -0.14 -0.44 16 8 C 0.00 0.03 6.23 -13.46 -0.08 -0.06 16 9 N -0.46 -8.97 10.54 -11.86 -0.13 -9.09 16 10 C -0.01 -0.29 11.25 -19.19 -0.22 -0.50 16 11 C -0.13 -2.94 5.79 -35.92 -0.21 -3.15 16 12 C 0.08 2.07 5.51 -29.04 -0.16 1.91 16 13 C -0.52 -14.26 9.09 -34.44 -0.31 -14.58 16 14 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 17 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 S 0.09 1.69 21.55 -107.50 -2.32 -0.63 16 22 C 0.03 0.43 6.01 -2.75 -0.02 0.41 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.03 0.24 8.00 -51.93 -0.42 -0.17 16 26 H 0.04 0.38 7.96 -51.93 -0.41 -0.04 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.69 7.86 -51.93 -0.41 0.28 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.17 3.28 8.06 -52.48 -0.42 2.86 16 33 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.05 0.58 7.73 -51.93 -0.40 0.18 16 37 H 0.09 1.16 5.86 -51.93 -0.30 0.85 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -29.62 316.52 -10.11 -39.73 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.71 Total: -2.55 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.12 Total: -16.36 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: -0.71 Total: -41.23 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.32 Total: -0.63 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.62 -10.11 -39.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.693 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds