Wall clock time and date at job start Mon Mar 30 2020 07:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48531 * 111.00008 * 2 1 4 4 C 1.54935 * 103.22620 * 200.27908 * 3 2 1 5 5 C 1.54591 * 102.92444 * 37.41328 * 4 3 2 6 6 H 1.08999 * 110.39450 * 97.00015 * 5 4 3 7 7 C 1.53000 * 110.31272 * 219.12870 * 5 4 3 8 8 C 1.50699 * 109.47419 * 182.16968 * 7 5 4 9 9 N 1.29027 * 124.91918 * 89.95253 * 8 7 5 10 10 C 1.31776 * 117.12568 * 180.02562 * 9 8 7 11 11 C 1.33635 * 114.50289 * 0.02562 * 10 9 8 12 12 C 1.50700 * 126.03862 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46948 * 89.96045 * 12 11 10 14 14 H 1.08004 * 120.00025 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99905 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00108 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 120.00022 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46937 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46858 * 120.00005 * 17 15 13 20 20 H 1.48501 * 109.47045 * 240.00081 * 17 15 13 21 21 S 1.70977 * 124.91502 * 270.00176 * 8 7 5 22 22 C 1.47897 * 111.00027 * 242.60028 * 2 1 3 23 23 H 1.08993 * 109.47219 * 177.39861 * 1 2 3 24 24 H 1.08997 * 109.47023 * 297.39697 * 1 2 3 25 25 H 1.09001 * 109.46709 * 57.39556 * 1 2 3 26 26 H 1.08999 * 110.67009 * 318.71343 * 3 2 1 27 27 H 1.08999 * 110.66771 * 81.67475 * 3 2 1 28 28 H 1.09002 * 110.71995 * 279.05427 * 4 3 2 29 29 H 1.09003 * 110.72642 * 155.77679 * 4 3 2 30 30 H 1.09000 * 109.47006 * 62.16551 * 7 5 4 31 31 H 1.09005 * 109.46837 * 302.16804 * 7 5 4 32 32 H 1.08004 * 122.74701 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.47229 * 209.95396 * 12 11 10 34 34 H 1.08995 * 109.47136 * 329.96040 * 12 11 10 35 35 H 0.97001 * 120.00314 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.91680 * 26.49362 * 22 2 1 37 37 H 1.08999 * 110.08639 * 265.28971 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2106 -0.5228 5 6 3.2983 0.1053 -1.5930 6 1 3.2143 0.5470 -2.5860 7 6 4.4896 -0.8532 -1.5382 8 6 4.3503 -1.8904 -2.6226 9 7 4.8147 -1.7733 -3.8206 10 6 4.6035 -2.7773 -4.6476 11 6 3.9226 -3.7979 -4.1179 12 6 3.5397 -5.0713 -4.8270 13 6 4.6324 -6.0937 -4.6485 14 1 5.5160 -5.8459 -4.0789 15 6 4.5046 -7.3450 -5.2131 16 7 3.4289 -7.6466 -5.9070 17 14 5.8594 -8.6121 -4.9925 18 1 6.9542 -8.0291 -4.1759 19 1 5.3113 -9.8078 -4.3032 20 1 6.3894 -9.0068 -6.3224 21 16 3.5527 -3.3921 -2.4437 22 6 1.9991 -0.6354 -1.2258 23 1 -0.3633 -1.0265 -0.0466 24 1 -0.3633 0.4729 0.9124 25 1 -0.3633 0.5538 -0.8657 26 1 1.4238 2.0205 -0.6729 27 1 2.0013 1.7987 1.0091 28 1 4.1115 0.8836 0.2788 29 1 3.8124 2.1352 -0.9715 30 1 4.5156 -1.3452 -0.5659 31 1 5.4132 -0.2937 -1.6871 32 1 4.9522 -2.7755 -5.6698 33 1 2.6103 -5.4558 -4.4067 34 1 3.4018 -4.8685 -5.8890 35 1 3.3388 -8.5271 -6.3040 36 1 1.2759 -0.5403 -2.0358 37 1 2.2117 -1.6882 -1.0399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260967114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:37 Heat of formation + Delta-G solvation = 11.527749 kcal Electronic energy + Delta-G solvation = -17511.148013 eV Core-core repulsion = 14799.582653 eV Total energy + Delta-G solvation = -2711.565360 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73502 -39.83968 -35.83660 -34.83221 -32.83065 -31.10562 -29.04445 -27.67927 -26.32735 -24.89210 -23.90769 -22.15036 -21.38248 -19.74199 -18.87522 -18.57416 -17.06710 -16.71566 -16.65597 -15.87169 -15.37422 -15.14924 -14.81399 -14.67161 -14.42488 -14.03912 -13.88963 -13.64158 -13.54810 -12.84087 -12.77975 -12.64099 -12.47501 -12.35362 -12.17323 -12.03390 -11.90086 -11.74973 -11.63016 -11.50419 -10.68778 -10.47211 -10.02122 -9.55511 -9.41655 -8.26583 -6.40626 -0.06818 0.51431 0.95661 1.38363 1.39229 1.52384 1.95280 2.38015 3.05460 3.10469 3.21890 3.68812 3.73100 3.86950 4.20106 4.35385 4.41983 4.45442 4.48361 4.52667 4.57445 4.61307 4.71397 4.87536 4.92316 4.98165 5.00875 5.07996 5.16766 5.19996 5.29257 5.37860 5.41055 5.64752 5.90377 6.04355 6.06688 6.68800 6.85399 7.28681 8.83016 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036318 B = 0.004052 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.791060 B = 6908.250087 C = 7222.019841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.533 5.533 3 C 0.032 3.968 4 C -0.110 4.110 5 C -0.087 4.087 6 H 0.071 0.929 7 C -0.023 4.023 8 C 0.030 3.970 9 N -0.483 5.483 10 C -0.005 4.005 11 C -0.183 4.183 12 C 0.094 3.906 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.274 1.274 21 S 0.116 5.884 22 C 0.034 3.966 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.028 0.972 26 H 0.046 0.954 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.170 0.830 33 H 0.011 0.989 34 H 0.022 0.978 35 H 0.268 0.732 36 H 0.034 0.966 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.331 17.456 12.595 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.257 5.257 3 C -0.095 4.095 4 C -0.148 4.148 5 C -0.108 4.108 6 H 0.089 0.911 7 C -0.064 4.064 8 C -0.249 4.249 9 N -0.198 5.198 10 C -0.153 4.153 11 C -0.304 4.304 12 C 0.055 3.945 13 C -0.572 4.572 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.790 3.210 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.200 1.200 21 S 0.370 5.630 22 C -0.095 4.095 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.187 0.813 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.493 17.032 13.626 21.953 hybrid contribution 0.283 -0.769 -2.219 2.366 sum -2.210 16.263 11.407 19.987 Atomic orbital electron populations 1.22560 0.87254 1.02178 1.01513 1.64755 1.08896 1.15994 1.36082 1.23349 0.95095 0.89068 1.02024 1.22560 0.96806 0.97857 0.97534 1.21950 0.92980 0.95662 1.00230 0.91050 1.20422 1.00364 0.92450 0.93202 1.27430 1.01524 0.99092 0.96806 1.66225 1.21832 1.29115 1.02597 1.21623 1.02594 0.89585 1.01502 1.26490 1.04381 1.02013 0.97540 1.17543 0.96060 0.86923 0.93985 1.21339 1.04234 0.97702 1.33890 0.92848 1.25872 0.98278 1.00342 0.94337 1.70058 1.28953 1.22445 1.35036 0.85377 0.78868 0.78436 0.78277 1.19127 1.19924 1.19975 1.83679 1.54193 1.14222 1.10913 1.23037 0.95892 0.99453 0.91079 0.91729 0.89759 0.95364 0.93525 0.88459 0.89319 0.89082 0.88143 0.87645 0.81250 0.97062 0.96025 0.92287 0.94716 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.40 127.69 1.20 1.43 16 2 N -0.53 -10.66 5.55 -909.17 -5.05 -15.71 16 3 C 0.03 0.48 6.56 86.65 0.57 1.05 16 4 C -0.11 -1.60 6.61 31.80 0.21 -1.39 16 5 C -0.09 -1.80 3.02 -9.91 -0.03 -1.83 16 6 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 7 C -0.02 -0.54 5.00 29.85 0.15 -0.39 16 8 C 0.03 0.97 6.23 88.52 0.55 1.52 16 9 N -0.48 -18.24 10.54 -191.45 -2.02 -20.26 16 10 C 0.00 -0.21 11.25 83.66 0.94 0.73 16 11 C -0.18 -8.25 5.79 24.64 0.14 -8.10 16 12 C 0.09 5.01 5.51 29.10 0.16 5.17 16 13 C -0.53 -30.24 9.09 25.60 0.23 -30.01 16 14 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 15 C 0.01 0.61 5.46 84.66 0.46 1.07 16 16 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 17 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 S 0.12 4.24 21.55 -56.49 -1.22 3.02 16 22 C 0.03 0.78 6.01 86.45 0.52 1.30 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 24 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.03 0.47 8.00 -2.39 -0.02 0.46 16 26 H 0.05 0.68 7.96 -2.39 -0.02 0.66 16 27 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.16 7.86 -2.39 -0.02 1.14 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.17 6.81 8.06 -2.91 -0.02 6.78 16 33 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.03 0.86 7.73 -2.39 -0.02 0.84 16 37 H 0.07 1.82 5.86 -2.39 -0.01 1.81 16 Total: -1.00 -64.06 316.52 0.17 -63.88 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.04 Total: 7.03 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 5.11 Total: -29.44 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -6.78 Total: -90.37 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.22 Total: 3.02 kcal Total: -64.06 0.17 -63.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.411 kcal (2) G-P(sol) polarization free energy of solvation -64.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds