Wall clock time and date at job start Mon Mar 30 2020 07:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47439 * 111.00045 * 2 1 4 4 C 1.54322 * 107.36952 * 236.65966 * 3 2 1 5 5 C 1.55398 * 102.90031 * 337.89642 * 4 3 2 6 6 H 1.08999 * 110.90155 * 277.38192 * 5 4 3 7 7 C 1.52998 * 111.02545 * 153.63387 * 5 4 3 8 8 C 1.50701 * 109.46740 * 181.15299 * 7 5 4 9 9 N 1.29025 * 124.91781 * 90.03172 * 8 7 5 10 10 C 1.31784 * 117.12455 * 179.97438 * 9 8 7 11 11 C 1.33641 * 114.50087 * 359.97438 * 10 9 8 12 12 C 1.50699 * 126.03649 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47471 * 89.97788 * 12 11 10 14 14 H 1.08004 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00332 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00072 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00233 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47259 * 59.99571 * 17 15 13 19 19 H 1.48496 * 109.47483 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46950 * 300.00311 * 17 15 13 21 21 S 1.70984 * 124.91304 * 269.71768 * 8 7 5 22 22 C 1.47843 * 110.99640 * 239.15292 * 2 1 3 23 23 H 1.09000 * 109.47341 * 60.12554 * 1 2 3 24 24 H 1.08994 * 109.47242 * 180.12898 * 1 2 3 25 25 H 1.09006 * 109.46953 * 300.12919 * 1 2 3 26 26 H 1.09002 * 109.88998 * 356.14887 * 3 2 1 27 27 H 1.09003 * 109.88733 * 117.17548 * 3 2 1 28 28 H 1.09005 * 110.70342 * 96.18020 * 4 3 2 29 29 H 1.08997 * 110.70605 * 219.41644 * 4 3 2 30 30 H 1.09003 * 109.47013 * 301.15068 * 7 5 4 31 31 H 1.08993 * 109.47260 * 61.15419 * 7 5 4 32 32 H 1.07999 * 122.75277 * 179.97438 * 10 9 8 33 33 H 1.09009 * 109.46977 * 209.97113 * 12 11 10 34 34 H 1.08994 * 109.47254 * 329.97061 * 12 11 10 35 35 H 0.97000 * 120.00433 * 180.02562 * 16 15 13 36 36 H 1.08996 * 110.37823 * 265.19398 * 22 2 1 37 37 H 1.09002 * 110.37399 * 27.53914 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9182 1.5165 -1.2304 5 6 3.3048 0.0443 -1.5438 6 1 4.1303 -0.2839 -0.9123 7 6 3.6483 -0.1298 -3.0245 8 6 3.9896 -1.5725 -3.2947 9 7 3.1402 -2.4803 -3.6400 10 6 3.6077 -3.6963 -3.8386 11 6 4.9250 -3.8211 -3.6509 12 6 5.7266 -5.0876 -3.8068 13 6 6.2178 -5.1998 -5.2271 14 1 5.9735 -4.4310 -5.9452 15 6 6.9790 -6.2837 -5.6098 16 7 7.2769 -7.2197 -4.7352 17 14 7.5872 -6.4231 -7.3705 18 1 8.4421 -5.2525 -7.6930 19 1 8.3782 -7.6704 -7.5237 20 1 6.4250 -6.4566 -8.2944 21 16 5.5599 -2.2418 -3.1954 22 6 1.9988 -0.7077 -1.1850 23 1 -0.3634 0.5119 -0.8911 24 1 -0.3633 -1.0276 0.0023 25 1 -0.3633 0.5159 0.8889 26 1 1.1756 2.0892 -0.0688 27 1 2.5674 1.5549 0.9119 28 1 2.3783 1.9592 -2.0675 29 1 3.8019 2.1057 -0.9855 30 1 2.7918 0.1611 -3.6328 31 1 4.5025 0.4988 -3.2757 32 1 2.9780 -4.5241 -4.1293 33 1 6.5795 -5.0636 -3.1283 34 1 5.0985 -5.9465 -3.5706 35 1 7.8127 -7.9821 -5.0043 36 1 2.2147 -1.7478 -0.9408 37 1 1.2889 -0.6502 -2.0102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260967116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:39 Heat of formation + Delta-G solvation = 11.466641 kcal Electronic energy + Delta-G solvation = -17443.270803 eV Core-core repulsion = 14731.702793 eV Total energy + Delta-G solvation = -2711.568010 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.73569 -39.79178 -35.82724 -34.79818 -32.79421 -31.04166 -29.07549 -27.80148 -26.31083 -24.92057 -23.84445 -21.79117 -21.40030 -20.16412 -18.73512 -18.53181 -17.13770 -16.66801 -16.50390 -15.85680 -15.30139 -15.24168 -14.76318 -14.49335 -14.27113 -14.18457 -14.09153 -13.69414 -13.31057 -13.13202 -12.76124 -12.70196 -12.50752 -12.20124 -12.11162 -12.05796 -11.87855 -11.76733 -11.66461 -11.50405 -10.67209 -10.44953 -10.01797 -9.54531 -9.27314 -8.25669 -6.40012 -0.04711 0.53286 0.97445 1.39287 1.41451 1.49920 1.97486 2.38410 3.05010 3.06204 3.25376 3.63163 3.74705 3.98278 4.26520 4.32612 4.42086 4.44981 4.49355 4.55235 4.57337 4.63859 4.77628 4.79264 4.85306 4.96437 4.98778 5.06131 5.20475 5.21326 5.36879 5.38804 5.41590 5.65000 5.99723 6.04917 6.14323 6.69127 6.87806 7.29101 8.83514 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.045455 B = 0.003766 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.845095 B = 7432.708033 C = 7627.664639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.557 5.557 3 C 0.038 3.962 4 C -0.126 4.126 5 C -0.088 4.088 6 H 0.079 0.921 7 C -0.023 4.023 8 C 0.030 3.970 9 N -0.479 5.479 10 C -0.004 4.004 11 C -0.181 4.181 12 C 0.094 3.906 13 C -0.535 4.535 14 H 0.054 0.946 15 C 0.010 3.990 16 N -0.926 5.926 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.269 1.269 21 S 0.115 5.885 22 C 0.057 3.943 23 H 0.032 0.968 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.168 0.832 33 H 0.011 0.989 34 H 0.021 0.979 35 H 0.268 0.732 36 H 0.049 0.951 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.074 19.027 6.903 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.281 5.281 3 C -0.089 4.089 4 C -0.164 4.164 5 C -0.109 4.109 6 H 0.098 0.902 7 C -0.064 4.064 8 C -0.248 4.248 9 N -0.194 5.194 10 C -0.152 4.152 11 C -0.302 4.302 12 C 0.055 3.945 13 C -0.573 4.573 14 H 0.072 0.928 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.790 3.210 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.194 1.194 21 S 0.369 5.631 22 C -0.071 4.071 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.185 0.815 33 H 0.029 0.971 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.444 19.149 7.573 22.256 hybrid contribution -0.480 -1.368 -1.726 2.255 sum -8.924 17.780 5.846 20.735 Atomic orbital electron populations 1.22544 0.86956 1.01979 1.01234 1.63520 1.08888 1.15428 1.40281 1.22911 0.98457 0.88548 0.98979 1.22864 1.00761 0.94648 0.98157 1.22304 0.97444 0.96758 0.94366 0.90230 1.20306 1.04121 0.85255 0.96720 1.27381 0.91861 1.01541 1.04009 1.66221 1.37312 1.00366 1.15462 1.21604 0.92793 0.95004 1.05833 1.26425 0.97974 1.00511 1.05287 1.17533 0.92982 0.87324 0.96661 1.21285 1.33301 1.07284 0.95425 0.92767 1.25883 0.95853 0.94975 1.02184 1.70048 1.38722 1.11285 1.36452 0.85482 0.78596 0.77843 0.79072 1.19157 1.20357 1.19375 1.83614 1.12888 1.01840 1.64771 1.22901 0.95738 0.97535 0.90914 0.94979 0.92228 0.90126 0.91377 0.90203 0.90041 0.88469 0.88384 0.87157 0.81460 0.97066 0.96135 0.92289 0.93293 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.12 127.69 1.16 1.54 16 2 N -0.56 -11.90 5.44 -911.68 -4.96 -16.87 16 3 C 0.04 0.60 6.89 86.65 0.60 1.20 16 4 C -0.13 -1.76 6.44 31.87 0.21 -1.55 16 5 C -0.09 -1.78 3.05 -9.31 -0.03 -1.81 16 6 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 7 C -0.02 -0.49 5.32 29.85 0.16 -0.34 16 8 C 0.03 0.96 6.21 88.52 0.55 1.51 16 9 N -0.48 -17.72 10.54 -191.44 -2.02 -19.74 16 10 C 0.00 -0.17 11.25 83.66 0.94 0.77 16 11 C -0.18 -8.07 5.79 24.64 0.14 -7.93 16 12 C 0.09 5.00 5.51 29.10 0.16 5.16 16 13 C -0.53 -30.18 9.09 25.60 0.23 -29.95 16 14 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 15 C 0.01 0.57 5.46 84.65 0.46 1.04 16 16 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 17 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 S 0.11 4.11 23.18 -56.49 -1.31 2.80 16 22 C 0.06 1.38 5.76 86.78 0.50 1.88 16 23 H 0.03 0.53 8.10 -2.39 -0.02 0.51 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.07 0.88 7.58 -2.39 -0.02 0.86 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 0.98 8.04 -2.38 -0.02 0.96 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 31 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.17 6.73 8.06 -2.91 -0.02 6.71 16 33 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.17 7.64 -2.39 -0.02 1.16 16 Total: -1.00 -64.19 320.04 0.14 -64.05 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 1.04 Total: 7.03 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 5.08 Total: -28.48 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -6.70 Total: -91.10 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.31 Total: 2.80 kcal Total: -64.19 0.14 -64.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.519 kcal (2) G-P(sol) polarization free energy of solvation -64.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds